TCONS_00071317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071317
Unique NameTCONS_00071317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071317 ID=TCONS_00071317|Name=TCONS_00071317|organism=Clytia hemisphaerica|type=transcript|length=200bp
caaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCGCTTGG
GGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAAGTGC
TTACGAGTCTTACGAAGCTTGGTATATAGGAATCAATTCACTTTTGACAA
ACGAGAGACAAGTCAATATCATCAGTGTTGGaacaaaatatgttttcatg
Run BLAST on NCBI

transcript from alignment at scaffold_60:1680286..1690888+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071317 ID=TCONS_00071317|Name=TCONS_00071317|organism=Clytia hemisphaerica|type=transcript|length=10603bp|location=Sequence derived from alignment at scaffold_60:1680286..1690888+ (Clytia hemisphaerica)
caaaagaaaaacatcctCATCTTTTCACGAAAGAAGAAAAGTTCGCTTGG
GGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGAGGAAAGTGC
TTACGAGTCTTACGAAGCTTGGTATATAGGAATCAGTTCAGTTTTGACAA
ACCGAAGACAAGTTACTATCATCAGTGATGGaacaaaatatgttttcatg
aAGAAACATGAAAACAAAACTGGTCAAAGACTATTTATTGGATTTAGGGA
AAAAGTACGTTATAATTATACAGCGCAAGACTATGAAATAATCTTTGAAG
GTCTGAACGAAGAAACGATGAAAAATGGACGATTCCTCCTTCTCCATCCC
AAAGTACCTGAAAAGCGTTTGAATTTTGTGCCATATCATGGTAATAAGGA
TTTGAATTGGTGGGATCTCGAAAAGGTTACTGAAGATTATTACTCTGGTA
ATGAAAAATCTGTAATCATTTTAGTATTTTATAATTAATTTGATCATCAT
ACATATTTTTAGGATACATTTGACTCTCAAACTTGAacggggaattttgt
tcgaattaaagagagattcaaattatagaaaatatttcaagaggATTTCT
CATTGACGGGGgctggaaacaagttcgaattatagaaagattttaataac
agaagttcgaataagcgaaagTTGTGctgtaactgttttcataaattcaa
aaagtatcaaaatgcTAAATTCAATTTCGGTTTCCTCTTCCTTTTCCTTC
CACTTAAAATAATATGAAAGACGAAATATATATTAAGTAAAATTGAGGaa
gtccaaaattttcgaagcctgcgaaaaaaattttttaggcaaatttggcc
aaaaaaacgggtttttcggactttgtgcaaaattggatcattaatttttt
ttgattttttccatgaaagaaggctaccatcataggtaaaagatggctga
agcagaattttgcaaaaaaaatttgttggctcaaaaaacgcatgtttatc
tataagaattactattaataagcatacatcaatgttcttagtcaaattac
tcaatttttttatgagatagatgttttttttgctcatgaggatttcattt
tgaagaatatgtgtgtttagacaggaaatttgggttgcttggcgtgtttt
tataaaaaaactgaccaaattcgatatttttttataagcacattatcaat
tacttaggtattagcttttctcgaggtggatctttcattctttatgattt
attgcacaaacatgcataactataaaccctcgaatgtgacggagcttgat
ttttggataaaaaaattttggggtaaatttcagctaaaaaacagctaaaa
aacgggttttttggactttgtgaaatattggatcattgtttttttctgat
attttgcatgaaagtaggtaaaagatggctcaagcagattttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcactattaataagcataca
tcaatgttcttagccaaattactcaattttttgatgagatagatgtttgt
ttttgctcacaaagtcttgaatatgaaagaatatatcaagagcatgaaat
tttggtttctaaacgttttgtttataagaaacaaacgactaattttaata
gatcgtcactatttgtgttctgaatgattgtttaatggtcacgtcacgta
gatatcaattataaatgtgttaaatgcataaccaggtaggtccataaaag
tatcacttgttaagcCTTAAAAGTAAtttaggattttattttcactattt
tgtcaGTATTCTTGTGtaatttcctaaaaaattttaaaaaccaaaaagca
acctaaaaatgttcgtaatataaagtaaaattgataaaattgattCATAA
ATAGACACTATTATAtgcttcttaatttttttgtttatcaaaggaatatg
ttcttgtatagtttgttcttataaaaaaggtgtattgcatAAACGAGTGA
AACTCTGTTCccttcttaaccctattcaacctaggcttttagaggcggtt
taaaaaaaagggggggaaaaaaaacgccccccccccccccctttttaacc
cctttcaacctaggcttttaggggcggttcagaactgggggggggggggg
gcttttcctgtaccactcCTTaatttttgatctagtgggtctttttggat
gaaatttggcacacaagatccttgtcacataaggtaacttttgacaaaaa
atttttttgatgacgtcactaatCATGCcgaaagtgagcaaaaactcaaa
atttcctttgttcttaaaAATAGCTATGGTATTCtaaaaaaagctttaga
aaaaagttgcctgagtttaaaatgtttattttatcctagatattcaataa
attacggtttaaatgatatatttgacattaaaaataaattcatattggaa
aagtgtcactttttctgacagactttatgtcagaaatgtcatcatgctca
aagtgtgaaaatttttaggtgtcaatttttttttattttaaagctaaata
aaagttaggactttacagaaaatttcatggcaaaagctctattatttcag
gagctattaccaataatttgacctacgaacagaaacagccccccccctag
gccgaatagggttaaagtttTCATTATATTGTTAGCAGAAAGGTCTATTT
GGGAATATATTTCACAAAAACTTCTTTCCATGAATAATTGTAACCATGTC
AATAAGTTTTCATCAAAAATCTTACTTGAAGTGCAGTTTTACGAAAACTA
AACACTTGCCTTGTAACTGTAAAACAGAAGTATCAAATTGAATGTAGATT
TTGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTGAAACT
TCTTTACACatagtggggatgaaaatttttaattactgtaaGTAGAGGTA
ATTTTAAGAACTGCTTGAAATCGGGCAATACAAAAATgcatttcttttct
ttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATTTAAT
AGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaagatttg
aataacagaagttcgaataagcgagagtttgctgtaactgttttcataaa
ttcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCCTTTT
CCTTCCACTTAAAATAATATGAAAGACGAAATATATATTAAGTTAAATTT
GAGGAAGTCCAAAATCTTCGAAACCTGCAgatcttcttaactttttgagt
ttttagaaGCTTTACAATGtagtttaaaatttcattttcaccattttgta
gtTTCCTGAAAATTTTGGGTTTTTTCGAGACCAAAAAGtaatcttaaaat
gttccttatataaagtacatgtttttttatcagcattgcacttataagca
tatctaggctcagatatggggaaaaattaagcatatggcaagcatttgct
tgagcctacaaaaaatatttttttcctgataTTGGCTTTTCTTGGCTGGA
ATTTCACTGATTTTCAGTATtaccctaaatttatgctttagatttaagca
tcccctcaagcatttttcagcctttttaAGCGTTCGACCTatgcatctct
gagcctgttttcggatttttgtatgcttataaaaaaaaacatgtaatgtg
CTAGCAAGTCGCTGCAGAAAATTGAAATCTGAAAATATTCATATTTCATA
TTTGCCTATGAATAGGATTAGGATTAGattaggggtagaaaccaatcaag
tagTCAGACTGCTGAAAAATAAGGTgaaatgatgaaatggatttacacca
ttcttataaaaacaagtaatactttaatggacctacctatttataaaacg
aataattagaatttaatggaagtaatgtataattttaaatttcgatttat
atatctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAAAGCGTGTAGACAAAAGTTCTTAAT
TAAAAACCCATCTAATGATGTTGAACTGCtttgcaaataaaaaatgtaat
aCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGTATTTTATAAAGA
GAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGTG
CGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATATG
GATTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGTGGGAG
AAATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAAAGAAG
AACATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTGAATTG
ATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTT
AGGTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAA
CGAAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaatg
gaaaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACCA
GATGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTAA
TGAAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCAA
ATCAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTAA
AATGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaagaagaaa
agtttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGG
GAGGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTTC
ACTTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaat
atgttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTACTTATC
GGATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCATCAAAT
AATCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATTCCTCC
TTCTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCATATCAG
TATGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTATTACTC
TGGTAATGAACAATCTGTAATCATTTTagtattttgaaattaatttgatC
ATCATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGGGAAAT
tctatttgttcgaattacagagaatattcaaattatagaaaatattttaa
gagggtttctcattgacggggactggaaacaagttcgaattatagaaaga
tttcaaataacagaagttcgaataagcgagagtttactgtaactgttttc
ataaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCCTCTTT
CTTTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTAAGTTA
AATTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttaccttttt
gagtttttaagctTTACAATATAgtttaaaactttattttcaccattttg
tgagtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAGACCAA
AAAgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAAGTCGC
TGCAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTatatac
tttttaattttttgcctGATCAAAGCAatatgttcttgtatagtttgttc
ttataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATTGTTAG
CAGACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCATGAAT
AATTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaaGTGCA
GTTTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTGAATGT
AGATTTGGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTG
AAACTTCTTTACACATAGTgtggatgaaaatttttaattactgtaaaTAG
AGGTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatttcttt
tctttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATTT
AATAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaagat
ttgaataacagaagttcgaataagcgagagtttgctgtaactgttttcat
aaattcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCCT
TTTCCTTCCACTTTAAATAATATGAAAGACGAAATATATattactagccg
gtacccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgcactca
AAGTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaataaaa
agatgtcttcaaagtttgactctaaccctcccccggagatctttttctcg
cttcgctcgcattaaatacgccgtccagttttcgacaatttgagaaaatg
tcatggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNtgttggatttttaacaactctattgtgagataat
aactttgttgatcaaaataagaaaaaggttgccgtaacaagcacaaaatc
ctatatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttcaaaaa
gaattctatattacgaataggtaaccttttaattaatgatccatcagaat
ttgaaacccccctcccttttagacgtaaagatttataatgaagaaatttt
caaggaaaatgtgctgaaactctcaaaattagcactgtgttcgcccaaaa
atacatcgatatgaaatcatagaactTTTGTAACTTgactttgagaaaat
tattttcgtaTCGTgtttgaacaagaactttttgcataataagtttattt
caatcaggataacattctcacttctgttcttataaatttacatttcggat
ttttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCaac
aaagaaaagccgctttgaatagatttataaaagatttcaacgatcattta
ggtcattaccgagacgttttctctccatctatatctttattacctctatg
atcagatttaaaaagataaataagtcaattctaaattgctttttttaaac
ccttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTTTTTAA
TAGTATCCAccacttgaaaatttttatatgaagaaaaagatggactaatt
tcttctcttgctttttatcgccctttgcTGAAataaaggctgaataaagt
ctaaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcgagaac
aaaacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaacaaat
ttgtggagcaatagactaaaagtcataattttaaaacacaaacaaagcga
aaacgaaagtggtgacacacagacacacaaagcaccgctattaatatata
gaagtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttcttaac
tttttgagtttttagaaGCTTTACAATGtagtttaaaatttcattttcac
cattttgttagTATACTTGTgtaatttcctgaaaattttggGTTTTTTCG
AGACCAAAAAgtaaccttaaaatgttccttatataaagtacatgtttttt
tttataagcattgcacttataagcatatctaggctcagatatggggaaaa
attaagcatatggcaagcatttgcttgagcctacaaaaaatatttttttc
ctgattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTATtaccc
taaatttatgctttagatttaagcatcccctcaagcatttttcagccttt
ttaAGCGTTCGACCTatgcatctctgagcctgttttcggatttttgtatg
cttataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAAAATTG
aaatctgaaaatattatatttcatATTTGCCTATGAATAGGATTAGGATT
GGattaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAATAAGGT
gaaatgatgaaatggatttacaccattcttataaaaaaaaagcgtgtaga
caAAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgcaa
ataaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTAT
GTATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAA
AGCTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAG
ATATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACAGT
GCAAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATCATCAA
ACTCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGAGTCAA
AGATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGAC
AATCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCACA
TGAAGCTGAAACGAAACAAGTTGCCGCAGACAAAGATCTTCAAATTAAAC
TgactgaaatggaaaaacaactTGCTATAAAGGACAAGGAGATAGCAGCC
AAGAAAATGGAGCTAATGACAAAAGACCAGGAAATGCtggaaaaaaaatg
atttcaaactTCAAATCAAAGATATGGAAAACTCCAACAAACTGAAATTT
GTGGAAATGGTGAAAGAAAAAGATGCGACAATCCAAAGACTTCGAAATGA
AAtcgaaaagttcaaaaagaacaacaaccAACCAGAATCTAAAATGGCgg
tcacaaaaaaaaaacatcctcATCTTTTCacgaaagaagaaaagtttgCT
TGGGGAGCTGATGTTTTCTTCGGATTCAGAGATATGAGATGGAAGGAAAG
TGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAATTCACTTTTGA
CAAACGAGAGACAAGTCAATATCATCAGTGTTGGaacaaaatatgttttc
atg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044321XLOC_044321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071317-exon-scaffold_60-1491911889:1680286..1680410TCONS_00071317-exon-scaffold_60-1491911889:1680286..1680410Clytia hemisphaericaexon
TCONS_00071317-exon-scaffold_60-1510915933:1680286..1680410TCONS_00071317-exon-scaffold_60-1510915933:1680286..1680410Clytia hemisphaericaexon
TCONS_00071317-exon-scaffold_60-1575043694:1680286..1680410TCONS_00071317-exon-scaffold_60-1575043694:1680286..1680410Clytia hemisphaericaexon
TCONS_00071317-exon-scaffold_60-1491911889:1690814..1690888TCONS_00071317-exon-scaffold_60-1491911889:1690814..1690888Clytia hemisphaericaexon
TCONS_00071317-exon-scaffold_60-1510915933:1690814..1690888TCONS_00071317-exon-scaffold_60-1510915933:1690814..1690888Clytia hemisphaericaexon
TCONS_00071317-exon-scaffold_60-1575043694:1690814..1690888TCONS_00071317-exon-scaffold_60-1575043694:1690814..1690888Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1680286..1690888 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.3239	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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