|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071318 ID=TCONS_00071318|Name=TCONS_00071318|organism=Clytia hemisphaerica|type=transcript|length=364bp
GACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGTGCG
TTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATATGGA
TTCTGCACATGGAGACGAGAGAAATTTAGCTCACAGTGCAAGTGGGAGAA
ATGTGCACAAAGTTGCTGACGATCAGCAAATCATCAAACTCAGGGAAGAA
CATGGAAGAGAAATCCAAAAATTGAACTATGAGTCAAAGATTGAATTGAT
GGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAG
GTCATCGATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACG
AAACAAGTTGCCGC Run BLAST on NCBI protein sequence of TCONS_00071318-protein >TCONS_00071318-protein ID=TCONS_00071318-protein|Name=TCONS_00071318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
LSDISLLLKGKACESAFGELQLKVLNIDNNNMDSAHGDERNLAHSASGRN
VHKVADDQQIIKLREEHGREIQKLNYESKIELMEAQMKNVSLEKDNQTLG
HRLEMLKLKNSHEAETKQVA Run BLAST on NCBI transcript from alignment at scaffold_60:1685388..1690412+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071318 ID=TCONS_00071318|Name=TCONS_00071318|organism=Clytia hemisphaerica|type=transcript|length=5025bp|location=Sequence derived from alignment at scaffold_60:1685388..1690412+ (Clytia hemisphaerica)
GACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGTGCG
TTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATATGGA
TTCTGCACATGGAGACGAGAGAAATTTAGCTAACAGTGCAAGTGGGAGAA
ATGTGCACAAAAGTGCTGACGATGAAGAAATCATCCAACTCAAAGAAGAA
CATCaaagagaaattcaaaaattgaattatgaGTCAAAGATTGAATTGAT
GGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAG
GTCATCAATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACG
AAACAAGTTGCCGCTGACAAAGATCTTCAAAATAAACTgactgaaatgga
aaaacaactTGCTATAAAGGACAAGGAGATATTAGACACGAAAAACCAGA
TGGCACTCAAAGAAAACCAATGGGAAAACGAATGTAAAATGAAACTAATG
AAAAACGACAAGGAAATgctggaaaaagaaaatgatttcaaaCTTCAAAT
CAAAGATTTAGAAAGCTCCAAAAAGAACAACAACCAACCGGAATCTAAAA
TGGCAgtcataaaagaaaaatatcctCATGTTTTCacgaaagaagaaaag
tttgCTTGGGGAGCTGATGTTTTCTTCGGATTCAGAGAGATGAGATGGGA
GGAAAGTGCTTACGAGTCTTACGAAGCTTGGTACATAGGAATCAGTTCAC
TTTTGACAAACAAGAGACAAGTTACTATCATCAGTGATGGaataaaatat
gttttcatgAAGAAACATGCAAACAAAACTTGTCAACAACTACTTATCGG
ATTTAGGGAAAAAGTAAGTTATAATTATACAGAGCCAGACCATCAAATAA
TCTTTGAAGGTCTGAGCGAAGAAACTATGAAAAATGGACGATTCCTCCTT
CTCCATCCCAAAGTACCTGAAAAGCGTTTGAAGTTTGTGCCATATCAGTA
TGATAAGGATTGGTGGAATCTTGAGAATGTTACTGAAGATTATTACTCTG
GTAATGAACAATCTGTAATCATTTTagtattttgaaattaatttgatCAT
CATACATATTTTTAGGATACAGTTGACTCTCAAACTCGAACGGGAAATtc
tatttgttcgaattacagagaatattcaaattatagaaaatattttaaga
gggtttctcattgacggggactggaaacaagttcgaattatagaaagatt
tcaaataacagaagttcgaataagcgagagtttactgtaactgttttcat
aaattcaaaaagtatcaaaatccTAAATTCAATTTCGGTTTCCTCTTTCT
TTTCCTTCCACTTAAAATAATATGAAAGACGAAATATAAATTAAGTTAAA
TTGAGAACATCCACAATCTTCGATGTCTGTGAATGTTCttacctttttga
gtttttaagctTTACAATATAgtttaaaactttattttcaccattttgtg
agtattcgtGTGTAATTTCCTTAAGAATTTTGATCTTTTAGAGACCAAAA
AgcaaccttaaaatgttcttaatataaAGTAATGTGCTATAAAGTCGCTG
CAGAAAATTGAAATCTGAAAATATTCATAAATAGACACTATTatatactt
tttaattttttgcctGATCAAAGCAatatgttcttgtatagtttgttctt
ataaaaaaagtgtattgcgTAAACGAGTGAAATTCATTATATTGTTAGCA
GACAGGTCTATTTGGGAATATATTTCACAAAAACCTCTTTCCATGAATAA
TTGTTACTATGCCAATAAGTTTTCatcaaaaatctaatttgaaGTGCAGT
TTTACGAAAACTTGTAACTGCAGAAAACAGAAGTATCAGATTGAATGTAG
ATTTGGAgtttagttttattttttactccTGTCTTATAGCCCCTGGTGAA
ACTTCTTTACACATAGTgtggatgaaaatttttaattactgtaaaTAGAG
GTAATTAAGAACTGTTTGAAATCGGGCAATACAAAAATgcatttcttttc
tttcaatttcttttaacCTTTCGGTACCATTGATTTCATTGACTATTTAA
TAGTCTATTATTAACCAGAGTGATTAACAGTTTGAAtaatagaaagattt
gaataacagaagttcgaataagcgagagtttgctgtaactgttttcataa
attcaaaaagtatcaaaatccTAAATTCAATTTCAGTTTCCTCTTCCTTT
TCCTTCCACTTTAAATAATATGAAAGACGAAATATATattactagccggt
acccgcgCCGGCGTCGCAcaccggttaagctgtagctgaacgcactcaAA
GTCCTTttgatgttgaagctggcttaaaaaatgatcaaactaataaaaag
atgtcttcaaagtttgactctaaccctcccccggagatctttttctcgct
tcgctcgcattaaatacgccgtccagttttcgacaatttgagaaaatgtc
atggtaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNtgttggatttttaacaactctattgtgagataataa
ctttgttgatcaaaataagaaaaaggttgccgtaacaagcacaaaatcct
atatttcTAAGGGTCCCTTCTCATAAAATaatcgataaatttcaaaaaga
attctatattacgaataggtaaccttttaattaatgatccatcagaattt
gaaacccccctcccttttagacgtaaagatttataatgaagaaattttca
aggaaaatgtgctgaaactctcaaaattagcactgtgttcgcccaaaaat
acatcgatatgaaatcatagaactTTTGTAACTTgactttgagaaaatta
ttttcgtaTCGTgtttgaacaagaactttttgcataataagtttatttca
atcaggataacattctcacttctgttcttataaatttacatttcggattt
ttttgcttccaatgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCaacaa
agaaaagccgctttgaatagatttataaaagatttcaacgatcatttagg
tcattaccgagacgttttctctccatctatatctttattacctctatgat
cagatttaaaaagataaataagtcaattctaaattgctttttttaaaccc
ttgtcataacttttcgaaattaaacatgtaaaatgacgaAGTTTTTAATA
GTATCCAccacttgaaaatttttatatgaagaaaaagatggactaatttc
ttctcttgctttttatcgccctttgcTGAAataaaggctgaataaagtct
aaaccatgCTCTATTCGATCTgtgaatcaaaacaaacttatcgagaacaa
aacattgcttgcgaaatcgaaagtatgcgcgaatccaatagaacaaattt
gtggagcaatagactaaaagtcataattttaaaacacaaacaaagcgaaa
acgaaagtggtgacacacagacacacaaagcaccgctattaatatataga
agtTAAATTTGAGGTCCAAAATCTTCGAAACCTGCAgatcttcttaactt
tttgagtttttagaaGCTTTACAATGtagtttaaaatttcattttcacca
ttttgttagTATACTTGTgtaatttcctgaaaattttggGTTTTTTCGAG
ACCAAAAAgtaaccttaaaatgttccttatataaagtacatgtttttttt
tataagcattgcacttataagcatatctaggctcagatatggggaaaaat
taagcatatggcaagcatttgcttgagcctacaaaaaatatttttttcct
gattttggcttttcttGGCTGGAATTTCACTGATTTTCAGTATtacccta
aatttatgctttagatttaagcatcccctcaagcatttttcagccttttt
aAGCGTTCGACCTatgcatctctgagcctgttttcggatttttgtatgct
tataaaaaaaaaacatgtaatgtgCTAGCAAGTCGCTGCAGAAAATTGaa
atctgaaaatattatatttcatATTTGCCTATGAATAGGATTAGGATTGG
attaggggtagaaaccaatcaagtagTCAGACTGCTGAAAAATAAGGTga
aatgatgaaatggatttacaccattcttataaaaaaaaagcgtgtagaca
AAAGTTCTTAATTAAAAACCCATCTAATGATGTTGAACTGCtttgcaaat
aaaaaatgtaataCGAGATTGTCTGTGTTATCTTTATGTTATTTGTATGT
ATTTTATAAAGAGAGACTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAG
CTTGTGAAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGAT
ATTAATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACAGTGC
AAGTGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATCATCAAAC
TCAGGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGAGTCAAAG
ATTGAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAA
TCAAACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCACATG
AAGCTGAAACGAAACAAGTTGCCGC Coding sequence (CDS) from alignment at scaffold_60:1685388..1690412+ >TCONS_00071318 ID=TCONS_00071318|Name=TCONS_00071318|organism=Clytia hemisphaerica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_60:1685388..1690412+ (Clytia hemisphaerica)
CTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTGAAAGTGCGTT
TGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAATAATATGGATT
CTGCACATGGAGACGAGAGAAATTTAGCTCACAGTGCAAGTGGGAGAAAT
GTGCACAAAGTTGCTGACGATCAGCAAATCATCAAACTCAGGGAAGAACA
TGGAAGAGAAATCCAAAAATTGAACTATGAGTCAAAGATTGAATTGATGG
AAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCAAACGTTAGGT
CATCGATTGGAGATGTTGAAGTTGAAGAATTCACATGAAGCTGAAACGAA
ACAAGTTGCCCTTTCTGATATTTCGTTGTTGTTGAAGGGAAAAGCTTGTG
AAAGTGCGTTTGGTGAATTGCAACTGAAAGTTCTCAACATAGATAACAAT
AATATGGATTCTGCACATGGAGACGAGAGAAATTTAGCTCACAGTGCAAG
TGGGAGAAATGTGCACAAAGTTGCTGACGATCAGCAAATCATCAAACTCA
GGGAAGAACATGGAAGAGAAATCCAAAAATTGAACTATGAGTCAAAGATT
GAATTGATGGAAGCTCAAATGAAAAATGTCAGTTTGGAAAAAGACAATCA
AACGTTAGGTCATCGATTGGAGATGTTGAAGTTGAAGAATTCACATGAAG
CTGAAACGAAACAAGTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071318-exon-scaffold_60-1491911889:1685388..1685495 | TCONS_00071318-exon-scaffold_60-1491911889:1685388..1685495 | Clytia hemisphaerica | exon |
| TCONS_00071318-exon-scaffold_60-1510915933:1685388..1685495 | TCONS_00071318-exon-scaffold_60-1510915933:1685388..1685495 | Clytia hemisphaerica | exon |
| TCONS_00071318-exon-scaffold_60-1575043694:1685388..1685495 | TCONS_00071318-exon-scaffold_60-1575043694:1685388..1685495 | Clytia hemisphaerica | exon |
| TCONS_00071318-exon-scaffold_60-1491911889:1690157..1690412 | TCONS_00071318-exon-scaffold_60-1491911889:1690157..1690412 | Clytia hemisphaerica | exon |
| TCONS_00071318-exon-scaffold_60-1510915933:1690157..1690412 | TCONS_00071318-exon-scaffold_60-1510915933:1690157..1690412 | Clytia hemisphaerica | exon |
| TCONS_00071318-exon-scaffold_60-1575043694:1690157..1690412 | TCONS_00071318-exon-scaffold_60-1575043694:1690157..1690412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_60 | supercontig | scaffold_60:1685388..1690412 + |
Blast
The following BLAST results are available for this feature:
|
