TCONS_00071320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071320
Unique NameTCONS_00071320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071320 ID=TCONS_00071320|Name=TCONS_00071320|organism=Clytia hemisphaerica|type=transcript|length=1575bp
TGGACAGCAAAACTCCAAGAAGCAAATGATAAACAAAACAACAAGATTTT
tatcaatgatgaaaaataaagtAACAACTCCTGACCCTTCACAGAAgtca
atttcatcattttttcaaaagtcaaccAAAAGGAGTAGTAGTAACATGTC
ATCACCACCAGCAAAGATTGCCAAGAGAAATGATGGAAAGGAGAATGCTA
CAACAACTAGTCCTTTATCACCagaacagaaaagaaaaatggaagAAAAC
CGGGTAAAAGCACAGGAGAAACTTCTTGAGAAGACTACTCAGGAATTTGA
TATTGGTCAAAGTTGGAAGAAGGCATTAGAGCCAGAATTCTCTAAAGAAT
ATTTCGGCAAactCAAGAACTTTGTTGCAgctgaaagaaaacaaaagaca
aTTTATCCACCtgAAAAAGATGTTTTCAGTTGGACCAATTATTTTGACAT
TAATGATACAAAAGTTGTTATCATTGGACAAGATCCCTATCATGGTCCAA
AACAAGCACATGGTCTATGTTTTAGCGTGCAACTTGGTATAACTCCTCCA
CCAAGtttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAAGGATT
TGAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGgCGTTC
TGCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAATGCTAATTCACAT
CAAGGAAAGGGTTGGGAAAAGCTGACCGACGCAACGATCAAATGGATCGA
TAGAAATCTTGATGGTGTTGTCTTTATATTGTGGGGAAAATATGCTGAGA
AAAAGGGTAGTTTTATCAATAAGAGTCGACATTTGGTATTGACGGGAAAA
CATCCTTCGCCACTGTCGGCACACCGTGGATTTTTCGGTTGtaagcattt
ttcaaaaaccaacgagtatcttcaaaaacaaaagaaaaaacctaTCGATT
GGAATTATTTACCAGAGAAACTTGATTAGATTTCAAAGTTGACTTGCTTT
GAAACACTGATTTTCATGATAGATTTTCTACTAGAggattttatgaagaa
aatgcTGGGTAATAGAAGTTTTGGCTTCACTAGAAGTTTTCTATTGTAAA
GGGGAGATCTCAAGAAGTCTAACTTAACTGGACTCGTCTGATAGAGAGAA
ACTGATATAAAGAATGATTTTGATTATGGTGATGCTATATAACACCCCTT
CTCGCAGACAAGGTATGACCCCCTCaaactggaaaaattgaccaaaatat
cgccCCCATTGGAAAATAATCATATAAACAAATCCtatactgcaaaatat
tgtgctttcTTTCATCCCACTGAATTtgctgacttgaaaacaattttgaa
aggaagattttgcgcggcacataccgtcgtttcgaaatcgagtcCCTCCC
TACTTCATAAAAACATGGCCTGgtctgttatttttatcccatttcacttt
cttttttttttttattattttacacctaagttttttttaatgttgttttg
taaatatttttaaaagcttAAAAGTATCAGAAatgtaaatataaaatttt
tagaaaccaaagaGATAAAAACAAC
Run BLAST on NCBI

protein sequence of TCONS_00071320-protein

>TCONS_00071320-protein ID=TCONS_00071320-protein|Name=TCONS_00071320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
GQQNSKKQMINKTTRFLSMMKNKVTTPDPSQKSISSFFQKSTKRSSSNMS
SPPAKIAKRNDGKENATTTSPLSPEQKRKMEENRVKAQEKLLEKTTQEFD
IGQSWKKALEPEFSKEYFGKLKNFVAAERKQKTIYPPEKDVFSWTNYFDI
NDTKVVIIGQDPYHGPKQAHGLCFSVQLGITPPPSLKNMYKELASDIEGF
EIPSHGYLAGWASQGVLLLNACLTVVAHNANSHQGKGWEKLTDATIKWID
RNLDGVVFILWGKYAEKKGSFINKSRHLVLTGKHPSPLSAHRGFFGCKHF
SKTNEYLQKQKKKPIDWNYLPEKLD
Run BLAST on NCBI

transcript from alignment at scaffold_60:1713250..1720300+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071320 ID=TCONS_00071320|Name=TCONS_00071320|organism=Clytia hemisphaerica|type=transcript|length=7051bp|location=Sequence derived from alignment at scaffold_60:1713250..1720300+ (Clytia hemisphaerica)
TGGACAGCAAAACTCCAAGAAGGTAGGTAATCTAACAGTTTGGTTTGTGT
TTCTTGTGAGCTCTGCTCTACACACAGACCAAAGCTCTTTTAACCCAAGG
TTTTTGCAGTGGCAATGATATGGAAGTCGAGAAGGTTCAGCATGCAACTT
CTTTCGAAAACTGTagagatttctttcaagctgTCGAGATTTTCTTTCAT
AAGCTGTCACTGCACTGGCCACTGGCTGTCCAAAATACCAGTCGGGTGTT
TATGTTAAAAACtgcaatacaccgtttaacagtgtcgactgcgcacgcgt
atgaacaatttgccattgttttgattttggcaaccacaggaaacttcact
ctcccccaaagtgagcatttttacctaccgcctctacggtggagatggcg
aaactgttaaacggtgtattattgctcttttcggaaattattgccaaaaa
tggcaattttttcaacgatgaaatgctgaatcagcagaattaaataaaaa
agtaaataaatgaaaattgccgttttcagcaattattgccgtttttggaa
ataaaagttgattttattatagaCTGGCACTAGTctaattttattattga
acacatggcatttgacaccctcgcgataagtaggcccactgtgcctcgtt
taattttgttttcaactggtttttgttggaaatgcagataacaaaatcga
gtcataatgtaaacaaatttacactcttaaaaatccgaaaaacctttttc
tcaatgcaattttactatttgcaaacacctctgacatctttgcccttaaa
atgacaacacattttgctgattcagcatttcattgttgaaaaattgccgt
tttcagcaataatttctgaaaagagcaataattgcagtttttttcttaaa
cacccgactgaaCACTGTtgctgtttttgatgaaaacGCACGTTCAacaa
aaatctttggaatagCATGTCTTGCAAGGTACCGtgcataagttggtcta
atatcgacacccCTTGTCTAGTTCCAACACCCTTCTTttagacaggaata
atatgaaagtttgaaTCACTGAATGAAAAAGGATTATCCCTCTCTGACCA
ctcagaaaagaaaaatagttttgaccTTTCTATCTATGAGCCCCCGCAGC
GGTTTGCATGATGACGTGAttaggacttttttcttgcatgATGACGTGAT
TAGTGATTTTTTTTGCCGTGAtaaagattttggcgtgatgcactgatagg
gcaaaaatttgaggcgtgatgcgtgatttaggctatttttcgctattttc
tgtgcgatgacaaattttagcgcgtgattaggggtgcagctgggggggcc
tcatctatttcagctgataaaaaaggGGGTGTTGGTATTAGGGAAGaggt
gttgacattagaccaaattAAGGTTGAAGGTAATAAACATTAAACTTCTC
TTGCAggatagacctaactcttcatacaaaaattacgggaaacacatatt
tggactttgtaccctatgctgcacgccaGCACTGAAGCTGAAGTCCcgca
aaagcgggacaaaaatcagttttttgcagtttgcaaaaaaacgccacata
gaagatctttcaaatcagtatgtgaatagagcagtaaaaaatacaatttt
tcaattttccttttttttgcaagagTTCTAAGACGGGCATTTGCATGTCC
CGAGAGCGGAAATTAgatgagagtaaaagacggcGTTTTTGTATACAttg
caaaattaatttttgagttaaaatttttcagccaattttcatgattttga
tgacgtcacagaaataagaatttgaataaCTTCTAGTAGGAGAAAgcttt
tgacttaaaatttccACCAAATGTGTAAATCAATAAAAGGAAGCGatcca
caaaaaaaaaaaattctttactgGCATcagcaaattttgcaaaaaaatga
atcATTTTTGACTTGAACTTGAAGGTTCCCCTCTTGGGTGATTCACAACA
TGTAAAATAAGGGAAGACGCATGGGTAATTGAAAAAGTAAATTCAACATC
TAAAAATATCCACTCAGGGAAAAGCTGTGTACTTTTTTGgcttaattcaa
tatttttttaagataGACTGCCTGATGTccgcttgacccccccccctttt
aagcCCATTGTGCATCCAGGTACGTTAGATATTCTTTTCGTGTTTTTATT
GACTGTAGCAAATGATAAACAAAACAACAAGATTTTtatcaatgatgaaa
aataaagtAACAACTCCTGACCCTTCACAGAAgtcaatttcatcattttt
tcaaaagtcaaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAA
AGATTGCCAAGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGTCCT
TTATCACCagaacagaaaagaaaaatggaagAAAACCGGGTAAAAGCACA
GGAGAAACTTCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTT
GGAAGAAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAagta
ataaaatctttaaatagtATTTGTTTATCGATTTAATTTAACTAAAGTTA
ACTCTGTTTATTTTAGTGGCATTCTTTTTATCTCATTTAAGTGCATTGCT
TTGTTTGTACAAAATACCCATTATATTTATTAGATGCAATATAATCTTTG
GTTATAAATACATGAAACTAAGGTTTTATGAAGAATTCACtgcaatcttt
tttttaagctCAAGAACTTTGTTGCAgctgaaagaaaacaaaagacaaTT
TATCCACCtggtaaatatgatattttttataCCATTATACCTTAAAAAAC
TTAGACCAGCAGGTAGTTTTAATTCCCACCAGTCAAATTGAAATCCAATC
TTAAAAATCCCAGCTTGAGAGAGAATGATCAGAATGATCTATCAGAGGAA
CTGGCCTAAAATATACAAATAATGAATTCTAGGAAATCACAAAATGATTC
TGGACctttaaatgaaaaaactttataGTCATATTATTGTaacagaaaat
attttcctACAATACTATCCAATCACAGGGTTTGATCATTTtgataaact
tttaaaatttaaacgATTTGACCAATATGTAACAGGGTCAACAATAAGTA
ACCTTTTTTCATTCACTTTTAGAAAAAGATGTTTTCAGTTGGACCAATTA
TTTTGACATTAATGATACAAAAGTTGTTATCATTGGACAAGATCCCTATC
ATGGTCCAAAACAAGCACATGGTTCGAATTTATTAATCAAGTTACATTCt
actaaaaatatttgtttatatttttcattcgGGTTAAAGAAGATGTCTCA
ATAAATTGAAGGCCATTATTCGTTGTGGCAAAACGTcatactcttgggta
cctaatagcctaatataataataacctaatataatataataataacctaa
tttttggaaaaagtttttgaaagttccctcttttgtcctaattctgctgt
attagcctccttttcaaaaatattccaccAATGACATTTTTGTTCTAATC
CCCCTTGCTTATTAAGTTTCGAGATTTTTTCTAACCCTCCCCCGGCTTAT
TCCAACCATCCCCCctccggctattaggtacccgagagtatctgAAGACA
CTAAAAACTGTTATACTTTAGATATAGAAGTTCAAGTTGGGTACTTTTCA
GGGCTTTTTCCGGGATAGTGTCTTCTTATTTTTGCTTGAGGTAAATTTAG
GCAAGCATTTAGTGACTAGAAGAATATACCCCCTGCTATAATATCGAAAA
CAAAACTAACTTATGAAATCTAATCATATTATATTTGTTATTGACAGGTC
TATGTTTTAGCGTGCAACTTGGTATAACTCCTCCACCAAGGTTTGAAAAA
CGAGTTTatatttcgaaatttcaaaatctcaagttttttaaaaataattc
ctATAAATTATAAAGATAAAGATTAAATATATTAATTAAGTATTTGCAAA
AGATATAATGTTTAAGTTAAGTTATAAGTTATCTTAACCCTTCgagcaat
aaagaaaaaaaattctcgaaattgactgaaattgaaaattgaaattttgc
aagtgtGTATCTTTGGTAAGACTTTTGAAGGTCAACATCAAGATCATAAT
ATAGTCAACCTTGAGATTGTAAGTCCCCCAGGATGCTTCCCCTAGTGAAA
ATATAGGAAAATGCTTGAAGGGTTAAAATCATTCAGGGCAttgtttaaaa
agattttagttTTAACCTCTGGAGGGATTGCATCAATCATATTACAATTT
GGTCTCATTATATTCATATTGCATGTGTATTATTTTCAAAGGTGGCATAA
TATTCTGAAGGTCAGTTTTCGGTCGTACCTTCATATCTTATAAAATATCT
TGGAAAATGAAAGATCTAACAATATTACTCTTTTGCAGACCTATTCAAGT
TTAGGTGTATTACAATCTTTCCTATAAGACAGCAAATAAATTTAgaatct
aaattttcagtttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAA
GGATTTGAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGG
TGAATGAAAGTATTTAATCAATTCCTACTAATGAAGAGCAATTAAAATCA
TATTTGATCAGATGTTAAGATATCTCGCTTAAGATATTTCACTCTCAGGC
TTAAACGAAACTAAAAGTAGCCGTACTAATGATCAGTGGCCGTATCATGA
ATGccgagcatccagctacggtgcgcaagattgtgggttcgatcccccag
ccgggtcataccaaagattcccaaaatggtacttaatgcctctctgcttg
atgctcagtcaTTAAAGGGACGGATCaggggtaagtggagaaatcaaGGG
AAAGGAGTAGCGCCTCCCCTACCTCAGGGTAAACAGCTAGAGAAANAGAC
GGACCaggggtaagtggagaaatcaaGGGAAAGGAGTAGCGCCTCCCCTA
CCTCAgggtagacagctagagaaaagagagcctttgggtcgccctcgact
gcggtcgcaaacttacttactttactaatgatgtttatatttttgtttta
attttaggCGTTCTGCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAA
TGCTAATTCACATCAAGGAAAGGTATGAATCATATTcctctaaattttaa
attcagCTAATTTTCTCTGAATACACTTGAACTTTGAAGCCGTTCCATAA
CTTTAAGATTGAATTTCTgacataaaaaagtgcttataaaaatcttTGTT
GAACTTCCATCGTTTATTATGAAAGTAACCTTGGGAAGTTCCATTTACAT
CTAATCGGGTATACTATTGTAATTCCCTTTGATTCTAATATTTGTTAGCT
ACAATCAGTGCAAAAATGTGTTGACAGTAAGTCTCGAAGAATACCACTAA
AACTTTTATTTCACTGCTCAGATCCCCAATTTCAATGGTTAGAGAACCGA
GGATTTCCTGACCGGGCAAACACTGTTTACTGCCAAATAtctggcactga
ttgtagttaTTTGGTGTTTACTAGTGAAAATGTCACCTTTATGCTTTTTC
CCGCTCATTTGTGAAGTACTCTACTGTCAAATTTATTTGTCAATTCGTTA
TTTTTAACAGtagtaaaaagttttaaaaacattattgTCCGTCCCTTTTC
GCCTGAATAATCGTTAACGACTACTTTTAAAGTtcaaagtatttattttc
actatcaaaaaaagtgaatataaagTGCTGGAAAAATACAGAAGACTAGT
CCTAGaccaaacaaaaataatttctttcattctttCAAGGGTTGGGAAAA
GCTGACCGACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTGTTG
TCTTTATATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGTTTTATCAAT
AAGGTACGACCATTATGTTCTTTTCAACAGTTTGTGTACTTTATCGCTAG
AAAATGAGTCGGNAAATAAAGTACGACCATTATGTTCTTTTCAACAGTTT
GTGTACTTTATCGCTAGAAAATGAGTCggtaaaattgatgaaaaattgcT
TACTGTCGTAATAttttaccgacgaatttttatagtcgacattttttttt
tccggcGATTATTTTGATCAACGTTTGATTTTTAgctcaacaaatatttt
ttttaccaaagtTATTATTggtttaaaattaaaaactatCTGATGACAAT
GCATTGAATCTCTGAAATTATAATATTCTACGAACGTATTTTTGTTTAGA
GTCGACATTTGGTATTGACGGGAAAACATCCTTCGCCACTGTCGGCACAC
CGTGGATTTTTCGGTTGtaagcatttttcaaaaaccaacgagtatcttca
aaaacaaaagaaaaaacctaTCGATTGGAATTATTTACCAGAGAAACTTG
ATTAGATTTCAAAGTTGACTTGCTTTGAAACACTGATTTTCATGATAGAT
TTTCTACTAGAggattttatgaagaaaatgcTGGGTAATAGAAGTTTTGG
CTTCACTAGAAGTTTTCTATTGTAAAGGGGAGATCTCAAGAAGTCTAACT
TAACTGGACTCGTCTGATAGAGAGAAACTGATATAAAGAATGATTTTGAT
TATGGTGATGCTATATAACACCCCTTCTCGCAGACAAGGTATGACCCCCT
CaaactggaaaaattgaccaaaatatcgccCCCATTGGAAAATAATCATA
TAAACAAATCCtatactgcaaaatattgtgctttcTTTCATCCCACTGAA
TTtgctgacttgaaaacaattttgaaaggaagattttgcgcggcacatac
cgtcgtttcgaaatcgagtcCCTCCCTACTTCATAAAAACATGGCCTGgt
ctgttatttttatcccatttcactttcttttttttttttattattttaca
cctaagttttttttaatgttgttttgtaaatatttttaaaagcttAAAAG
TATCAGAAatgtaaatataaaatttttagaaaccaaagaGATAAAAACAA
C

Coding sequence (CDS) from alignment at scaffold_60:1713250..1720300+

>TCONS_00071320 ID=TCONS_00071320|Name=TCONS_00071320|organism=Clytia hemisphaerica|type=CDS|length=8802bp|location=Sequence derived from alignment at scaffold_60:1713250..1720300+ (Clytia hemisphaerica)
GGACAGCAAAACTCCAAGAAGCAAATGATAAACAAAACAACAAGATTTTt
atcaatgatgaaaaataaagtAACAACTCCTGACCCTTCACAGAAgtcaa
tttcatcattttttcaaaagtcaaccAAAAGGAGTAGTAGTAACATGTCA
TCACCACCAGCAAAGATTGCCAAGAGAAATGATGGAAAGGAGAATGCTAC
AACAACTAGTCCTTTATCACCagaacagaaaagaaaaatggaagAAAACC
GGGTAAAAGCACAGGAGAAACTTCTTGAGAAGACTACTCAGGAATTTGAT
ATTGGTCAAAGTTGGAAGAAGGCATTAGAGCCAGAATTCTCTAAAGAATA
TTTCGGCAAactCAAGAACTTTGTTGCAgctgaaagaaaacaaaagacaa
TTTATCCACCtgAAAAAGATGTTTTCAGTTGGACCAATTATTTTGACATT
AATGATACAAAAGTTGTTATCATTGGACAAGATCCCTATCATGGTCCAAA
ACAAGCACATGGTCTATGTTTTAGCGTGCAACTTGGTATAACTCCTCCAC
CAAGtttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAAGGATTT
GAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGgCGTTCT
GCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAATGCTAATTCACATC
AAGGAAAGGGTTGGGAAAAGCTGACCGACGCAACGATCAAATGGATCGAT
AGAAATCTTGATGGTGTTGTCTTTATATTGTGGGGAAAATATGCTGAGAA
AAAGGGTAGTTTTATCAATAAGAGTCGACATTTGGTATTGACGGGAAAAC
ATCCTTCGCCACTGTCGGCACACCGTGGATTTTTCGGTTGtaagcatttt
tcaaaaaccaacgagtatcttcaaaaacaaaagaaaaaacctaTCGATTG
GAATTATTTACCAGAGAAACTTGATTAGGGACAGCAAAACTCCAAGAAGC
AAATGATAAACAAAACAACAAGATTTTtatcaatgatgaaaaataaagtA
ACAACTCCTGACCCTTCACAGAAgtcaatttcatcattttttcaaaagtc
aaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAAAGATTGCCA
AGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGTCCTTTATCACCa
gaacagaaaagaaaaatggaagAAAACCGGGTAAAAGCACAGGAGAAACT
TCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTTGGAAGAAGG
CATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAactCAAGAACTTT
GTTGCAgctgaaagaaaacaaaagacaaTTTATCCACCtgAAAAAGATGT
TTTCAGTTGGACCAATTATTTTGACATTAATGATACAAAAGTTGTTATCA
TTGGACAAGATCCCTATCATGGTCCAAAACAAGCACATGGTCTATGTTTT
AGCGTGCAACTTGGTATAACTCCTCCACCAAGtttgaagaaTATGTACAA
AGAGTTGGCGAGTGATATCGAAGGATTTGAAATCCCAAGTCATGGTTATC
TTGCCGGATGGGCAAGCCAAGgCGTTCTGCTATTAAACGCTTGTTTAACA
GTTGTTGCTCATAATGCTAATTCACATCAAGGAAAGGGTTGGGAAAAGCT
GACCGACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTGTTGTCT
TTATATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGTTTTATCAATAAG
AGTCGACATTTGGTATTGACGGGAAAACATCCTTCGCCACTGTCGGCACA
CCGTGGATTTTTCGGTTGtaagcatttttcaaaaaccaacgagtatcttc
aaaaacaaaagaaaaaacctaTCGATTGGAATTATTTACCAGAGAAACTT
GATTAGGGACAGCAAAACTCCAAGAAGCAAATGATAAACAAAACAACAAG
ATTTTtatcaatgatgaaaaataaagtAACAACTCCTGACCCTTCACAGA
AgtcaatttcatcattttttcaaaagtcaaccAAAAGGAGTAGTAGTAAC
ATGTCATCACCACCAGCAAAGATTGCCAAGAGAAATGATGGAAAGGAGAA
TGCTACAACAACTAGTCCTTTATCACCagaacagaaaagaaaaatggaag
AAAACCGGGTAAAAGCACAGGAGAAACTTCTTGAGAAGACTACTCAGGAA
TTTGATATTGGTCAAAGTTGGAAGAAGGCATTAGAGCCAGAATTCTCTAA
AGAATATTTCGGCAAactCAAGAACTTTGTTGCAgctgaaagaaaacaaa
agacaaTTTATCCACCtgAAAAAGATGTTTTCAGTTGGACCAATTATTTT
GACATTAATGATACAAAAGTTGTTATCATTGGACAAGATCCCTATCATGG
TCCAAAACAAGCACATGGTCTATGTTTTAGCGTGCAACTTGGTATAACTC
CTCCACCAAGtttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAA
GGATTTGAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGg
CGTTCTGCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAATGCTAATT
CACATCAAGGAAAGGGTTGGGAAAAGCTGACCGACGCAACGATCAAATGG
ATCGATAGAAATCTTGATGGTGTTGTCTTTATATTGTGGGGAAAATATGC
TGAGAAAAAGGGTAGTTTTATCAATAAGAGTCGACATTTGGTATTGACGG
GAAAACATCCTTCGCCACTGTCGGCACACCGTGGATTTTTCGGTTGtaag
catttttcaaaaaccaacgagtatcttcaaaaacaaaagaaaaaacctaT
CGATTGGAATTATTTACCAGAGAAACTTGATTAGGGACAGCAAAACTCCA
AGAAGCAAATGATAAACAAAACAACAAGATTTTtatcaatgatgaaaaat
aaagtAACAACTCCTGACCCTTCACAGAAgtcaatttcatcattttttca
aaagtcaaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAAAGA
TTGCCAAGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGTCCTTTA
TCACCagaacagaaaagaaaaatggaagAAAACCGGGTAAAAGCACAGGA
GAAACTTCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTTGGA
AGAAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAactCAAG
AACTTTGTTGCAgctgaaagaaaacaaaagacaaTTTATCCACCtgAAAA
AGATGTTTTCAGTTGGACCAATTATTTTGACATTAATGATACAAAAGTTG
TTATCATTGGACAAGATCCCTATCATGGTCCAAAACAAGCACATGGTCTA
TGTTTTAGCGTGCAACTTGGTATAACTCCTCCACCAAGtttgaagaaTAT
GTACAAAGAGTTGGCGAGTGATATCGAAGGATTTGAAATCCCAAGTCATG
GTTATCTTGCCGGATGGGCAAGCCAAGgCGTTCTGCTATTAAACGCTTGT
TTAACAGTTGTTGCTCATAATGCTAATTCACATCAAGGAAAGGGTTGGGA
AAAGCTGACCGACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTG
TTGTCTTTATATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGTTTTATC
AATAAGAGTCGACATTTGGTATTGACGGGAAAACATCCTTCGCCACTGTC
GGCACACCGTGGATTTTTCGGTTGtaagcatttttcaaaaaccaacgagt
atcttcaaaaacaaaagaaaaaacctaTCGATTGGAATTATTTACCAGAG
AAACTTGATTAGGGACAGCAAAACTCCAAGAAGCAAATGATAAACAAAAC
AACAAGATTTTtatcaatgatgaaaaataaagtAACAACTCCTGACCCTT
CACAGAAgtcaatttcatcattttttcaaaagtcaaccAAAAGGAGTAGT
AGTAACATGTCATCACCACCAGCAAAGATTGCCAAGAGAAATGATGGAAA
GGAGAATGCTACAACAACTAGTCCTTTATCACCagaacagaaaagaaaaa
tggaagAAAACCGGGTAAAAGCACAGGAGAAACTTCTTGAGAAGACTACT
CAGGAATTTGATATTGGTCAAAGTTGGAAGAAGGCATTAGAGCCAGAATT
CTCTAAAGAATATTTCGGCAAactCAAGAACTTTGTTGCAgctgaaagaa
aacaaaagacaaTTTATCCACCtgAAAAAGATGTTTTCAGTTGGACCAAT
TATTTTGACATTAATGATACAAAAGTTGTTATCATTGGACAAGATCCCTA
TCATGGTCCAAAACAAGCACATGGTCTATGTTTTAGCGTGCAACTTGGTA
TAACTCCTCCACCAAGtttgaagaaTATGTACAAAGAGTTGGCGAGTGAT
ATCGAAGGATTTGAAATCCCAAGTCATGGTTATCTTGCCGGATGGGCAAG
CCAAGgCGTTCTGCTATTAAACGCTTGTTTAACAGTTGTTGCTCATAATG
CTAATTCACATCAAGGAAAGGGTTGGGAAAAGCTGACCGACGCAACGATC
AAATGGATCGATAGAAATCTTGATGGTGTTGTCTTTATATTGTGGGGAAA
ATATGCTGAGAAAAAGGGTAGTTTTATCAATAAGAGTCGACATTTGGTAT
TGACGGGAAAACATCCTTCGCCACTGTCGGCACACCGTGGATTTTTCGGT
TGtaagcatttttcaaaaaccaacgagtatcttcaaaaacaaaagaaaaa
acctaTCGATTGGAATTATTTACCAGAGAAACTTGATTAGGGACAGCAAA
ACTCCAAGAAGCAAATGATAAACAAAACAACAAGATTTTtatcaatgatg
aaaaataaagtAACAACTCCTGACCCTTCACAGAAgtcaatttcatcatt
ttttcaaaagtcaaccAAAAGGAGTAGTAGTAACATGTCATCACCACCAG
CAAAGATTGCCAAGAGAAATGATGGAAAGGAGAATGCTACAACAACTAGT
CCTTTATCACCagaacagaaaagaaaaatggaagAAAACCGGGTAAAAGC
ACAGGAGAAACTTCTTGAGAAGACTACTCAGGAATTTGATATTGGTCAAA
GTTGGAAGAAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTCGGCAAa
ctCAAGAACTTTGTTGCAgctgaaagaaaacaaaagacaaTTTATCCACC
tgAAAAAGATGTTTTCAGTTGGACCAATTATTTTGACATTAATGATACAA
AAGTTGTTATCATTGGACAAGATCCCTATCATGGTCCAAAACAAGCACAT
GGTCTATGTTTTAGCGTGCAACTTGGTATAACTCCTCCACCAAGtttgaa
gaaTATGTACAAAGAGTTGGCGAGTGATATCGAAGGATTTGAAATCCCAA
GTCATGGTTATCTTGCCGGATGGGCAAGCCAAGgCGTTCTGCTATTAAAC
GCTTGTTTAACAGTTGTTGCTCATAATGCTAATTCACATCAAGGAAAGGG
TTGGGAAAAGCTGACCGACGCAACGATCAAATGGATCGATAGAAATCTTG
ATGGTGTTGTCTTTATATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGT
TTTATCAATAAGAGTCGACATTTGGTATTGACGGGAAAACATCCTTCGCC
ACTGTCGGCACACCGTGGATTTTTCGGTTGtaagcatttttcaaaaacca
acgagtatcttcaaaaacaaaagaaaaaacctaTCGATTGGAATTATTTA
CCAGAGAAACTTGATTAGGGACAGCAAAACTCCAAGAAGCAAATGATAAA
CAAAACAACAAGATTTTtatcaatgatgaaaaataaagtAACAACTCCTG
ACCCTTCACAGAAgtcaatttcatcattttttcaaaagtcaaccAAAAGG
AGTAGTAGTAACATGTCATCACCACCAGCAAAGATTGCCAAGAGAAATGA
TGGAAAGGAGAATGCTACAACAACTAGTCCTTTATCACCagaacagaaaa
gaaaaatggaagAAAACCGGGTAAAAGCACAGGAGAAACTTCTTGAGAAG
ACTACTCAGGAATTTGATATTGGTCAAAGTTGGAAGAAGGCATTAGAGCC
AGAATTCTCTAAAGAATATTTCGGCAAactCAAGAACTTTGTTGCAgctg
aaagaaaacaaaagacaaTTTATCCACCtgAAAAAGATGTTTTCAGTTGG
ACCAATTATTTTGACATTAATGATACAAAAGTTGTTATCATTGGACAAGA
TCCCTATCATGGTCCAAAACAAGCACATGGTCTATGTTTTAGCGTGCAAC
TTGGTATAACTCCTCCACCAAGtttgaagaaTATGTACAAAGAGTTGGCG
AGTGATATCGAAGGATTTGAAATCCCAAGTCATGGTTATCTTGCCGGATG
GGCAAGCCAAGgCGTTCTGCTATTAAACGCTTGTTTAACAGTTGTTGCTC
ATAATGCTAATTCACATCAAGGAAAGGGTTGGGAAAAGCTGACCGACGCA
ACGATCAAATGGATCGATAGAAATCTTGATGGTGTTGTCTTTATATTGTG
GGGAAAATATGCTGAGAAAAAGGGTAGTTTTATCAATAAGAGTCGACATT
TGGTATTGACGGGAAAACATCCTTCGCCACTGTCGGCACACCGTGGATTT
TTCGGTTGtaagcatttttcaaaaaccaacgagtatcttcaaaaacaaaa
gaaaaaacctaTCGATTGGAATTATTTACCAGAGAAACTTGATTAGGGAC
AGCAAAACTCCAAGAAGCAAATGATAAACAAAACAACAAGATTTTtatca
atgatgaaaaataaagtAACAACTCCTGACCCTTCACAGAAgtcaatttc
atcattttttcaaaagtcaaccAAAAGGAGTAGTAGTAACATGTCATCAC
CACCAGCAAAGATTGCCAAGAGAAATGATGGAAAGGAGAATGCTACAACA
ACTAGTCCTTTATCACCagaacagaaaagaaaaatggaagAAAACCGGGT
AAAAGCACAGGAGAAACTTCTTGAGAAGACTACTCAGGAATTTGATATTG
GTCAAAGTTGGAAGAAGGCATTAGAGCCAGAATTCTCTAAAGAATATTTC
GGCAAactCAAGAACTTTGTTGCAgctgaaagaaaacaaaagacaaTTTA
TCCACCtgAAAAAGATGTTTTCAGTTGGACCAATTATTTTGACATTAATG
ATACAAAAGTTGTTATCATTGGACAAGATCCCTATCATGGTCCAAAACAA
GCACATGGTCTATGTTTTAGCGTGCAACTTGGTATAACTCCTCCACCAAG
tttgaagaaTATGTACAAAGAGTTGGCGAGTGATATCGAAGGATTTGAAA
TCCCAAGTCATGGTTATCTTGCCGGATGGGCAAGCCAAGgCGTTCTGCTA
TTAAACGCTTGTTTAACAGTTGTTGCTCATAATGCTAATTCACATCAAGG
AAAGGGTTGGGAAAAGCTGACCGACGCAACGATCAAATGGATCGATAGAA
ATCTTGATGGTGTTGTCTTTATATTGTGGGGAAAATATGCTGAGAAAAAG
GGTAGTTTTATCAATAAGAGTCGACATTTGGTATTGACGGGAAAACATCC
TTCGCCACTGTCGGCACACCGTGGATTTTTCGGTTGtaagcatttttcaa
aaaccaacgagtatcttcaaaaacaaaagaaaaaacctaTCGATTGGAAT
TATTTACCAGAGAAACTTGATTAGGGACAGCAAAACTCCAAGAAGCAAAT
GATAAACAAAACAACAAGATTTTtatcaatgatgaaaaataaagtAACAA
CTCCTGACCCTTCACAGAAgtcaatttcatcattttttcaaaagtcaacc
AAAAGGAGTAGTAGTAACATGTCATCACCACCAGCAAAGATTGCCAAGAG
AAATGATGGAAAGGAGAATGCTACAACAACTAGTCCTTTATCACCagaac
agaaaagaaaaatggaagAAAACCGGGTAAAAGCACAGGAGAAACTTCTT
GAGAAGACTACTCAGGAATTTGATATTGGTCAAAGTTGGAAGAAGGCATT
AGAGCCAGAATTCTCTAAAGAATATTTCGGCAAactCAAGAACTTTGTTG
CAgctgaaagaaaacaaaagacaaTTTATCCACCtgAAAAAGATGTTTTC
AGTTGGACCAATTATTTTGACATTAATGATACAAAAGTTGTTATCATTGG
ACAAGATCCCTATCATGGTCCAAAACAAGCACATGGTCTATGTTTTAGCG
TGCAACTTGGTATAACTCCTCCACCAAGtttgaagaaTATGTACAAAGAG
TTGGCGAGTGATATCGAAGGATTTGAAATCCCAAGTCATGGTTATCTTGC
CGGATGGGCAAGCCAAGgCGTTCTGCTATTAAACGCTTGTTTAACAGTTG
TTGCTCATAATGCTAATTCACATCAAGGAAAGGGTTGGGAAAAGCTGACC
GACGCAACGATCAAATGGATCGATAGAAATCTTGATGGTGTTGTCTTTAT
ATTGTGGGGAAAATATGCTGAGAAAAAGGGTAGTTTTATCAATAAGAGTC
GACATTTGGTATTGACGGGAAAACATCCTTCGCCACTGTCGGCACACCGT
GGATTTTTCGGTTGtaagcatttttcaaaaaccaacgagtatcttcaaaa
acaaaagaaaaaacctaTCGATTGGAATTATTTACCAGAGAAACTTGATT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044323XLOC_044323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071320-exon-scaffold_60-1491911889:1713250..1713271TCONS_00071320-exon-scaffold_60-1491911889:1713250..1713271Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1713250..1713271TCONS_00071320-exon-scaffold_60-1510915933:1713250..1713271Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1713250..1713271TCONS_00071320-exon-scaffold_60-1575043694:1713250..1713271Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1715458..1715796TCONS_00071320-exon-scaffold_60-1491911889:1715458..1715796Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1715458..1715796TCONS_00071320-exon-scaffold_60-1510915933:1715458..1715796Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1715458..1715796TCONS_00071320-exon-scaffold_60-1575043694:1715458..1715796Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1716008..1716059TCONS_00071320-exon-scaffold_60-1491911889:1716008..1716059Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1716008..1716059TCONS_00071320-exon-scaffold_60-1510915933:1716008..1716059Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1716008..1716059TCONS_00071320-exon-scaffold_60-1575043694:1716008..1716059Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1716422..1716520TCONS_00071320-exon-scaffold_60-1491911889:1716422..1716520Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1716422..1716520TCONS_00071320-exon-scaffold_60-1510915933:1716422..1716520Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1716422..1716520TCONS_00071320-exon-scaffold_60-1575043694:1716422..1716520Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1717097..1717139TCONS_00071320-exon-scaffold_60-1491911889:1717097..1717139Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1717097..1717139TCONS_00071320-exon-scaffold_60-1510915933:1717097..1717139Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1717097..1717139TCONS_00071320-exon-scaffold_60-1575043694:1717097..1717139Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1717760..1717848TCONS_00071320-exon-scaffold_60-1491911889:1717760..1717848Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1717760..1717848TCONS_00071320-exon-scaffold_60-1510915933:1717760..1717848Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1717760..1717848TCONS_00071320-exon-scaffold_60-1575043694:1717760..1717848Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1718357..1718421TCONS_00071320-exon-scaffold_60-1491911889:1718357..1718421Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1718357..1718421TCONS_00071320-exon-scaffold_60-1510915933:1718357..1718421Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1718357..1718421TCONS_00071320-exon-scaffold_60-1575043694:1718357..1718421Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1719089..1719202TCONS_00071320-exon-scaffold_60-1491911889:1719089..1719202Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1719089..1719202TCONS_00071320-exon-scaffold_60-1510915933:1719089..1719202Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1719089..1719202TCONS_00071320-exon-scaffold_60-1575043694:1719089..1719202Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1491911889:1719549..1720300TCONS_00071320-exon-scaffold_60-1491911889:1719549..1720300Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1510915933:1719549..1720300TCONS_00071320-exon-scaffold_60-1510915933:1719549..1720300Clytia hemisphaericaexon
TCONS_00071320-exon-scaffold_60-1575043694:1719549..1720300TCONS_00071320-exon-scaffold_60-1575043694:1719549..1720300Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071320-proteinTCONS_00071320-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1713250..1720300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.0229	24.0858	158.032	164.822	3.88774	3.92411	11.2092	11.9349	12.4128	11.289	9.10434	8.84878	7.13998	4.01208	6.92701	6.55893	12.7706	10.6914	0.883482	2.08012	6.91287	6.32015	15.8058	16.425	8.61437	13.7229	3.33269	1.61196	6.88963	8.64632
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005122Uracil-DNA_glycosylase-like
IPR002043UDG_fam1
IPR018085Ura-DNA_Glyclase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004844uracil DNA N-glycosylase activity
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0006284base-excision repair
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006281 DNA repair
molecular_function GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
molecular_function GO:0004844 uracil DNA N-glycosylase activity
Blast
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BLAST of TCONS_00071320 vs. Swiss-Prot (Human)
Match: UNG (Uracil-DNA glycosylase OS=Homo sapiens GN=UNG PE=1 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 3.013e-104
Identity = 156/261 (59.77%), Postives = 189/261 (72.41%), Query Frame = 2 
Query:  185 GKENATT--TSPLSPEQKRKMEENRVKAQEKLLEKTTQEFDIGQSWKKALEPEFSKEYFGKLKNFVAAERKQKTIYPPEKDVFSWTNYFDINDTKVVIIGQDPYHGPKQAHGLCFSVQLGITPPPSLKNMYKELASDIEGFEIPSHGYLAGWASQGVLLLNACLTVVAHNANSHQGKGWEKLTDATIKWIDRNLDGVVFILWGKYAEKKGSFINKSRHLVLTGKHPSPLSAHRGFFGCKHFSKTNEYLQKQKKKPIDWNYL 961
            G+E   T  +SPLS EQ  +++ N+  A  +L  +       G+SWKK L  EF K YF KL  FVA ERK  T+YPP   VF+WT   DI D KVVI+GQDPYHGP QAHGLCFSVQ  + PPPSL+N+YKEL++DIE F  P HG L+GWA QGVLLLNA LTV AH ANSH+ +GWE+ TDA + W+++N +G+VF+LWG YA+KKGS I++ RH VL   HPSPLS +RGFFGC+HFSKTNE LQK  KKPIDW  L
Sbjct:   54 GQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAARNV-PVGFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL 313
The following BLAST results are available for this feature:
BLAST of TCONS_00071320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UNG3.013e-10459.77Uracil-DNA glycosylase OS=Homo sapiens GN=UNG PE=1... [more]
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