TCONS_00071352 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071352
Unique Name	TCONS_00071352
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2736

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:489297..492359-

transcript sequence

>TCONS_00071352 ID=TCONS_00071352|Name=TCONS_00071352|organism=Clytia hemisphaerica|type=transcript|length=2736bp
TTCTGATTTACATTTTCTTTCTTAGCTCTAAAATTACTAATAAATCGACT
TCATGAAAATAGAAATCGTCATGCAATCACTATAATATCTGGTCCACTGA
AGTATCTGAAATGAATCGCGATACATTTCACTGATGGTAATATCGTCCAA
CGATTGTAAGTATTTTCTAACCAATCTAACATCTAAGTACGGTTGCTGCA
ACAcCTTTATTGATTTCGTTTATGGTAACGGAAAGAATATAATTCTATCT
TTTCTGTCTTCTAAACGCATGCTTAACTTTAGCCCATagtgacattttct
ttttctctccaTCGTAATCATAATGATCCTTATAATCGTAGTCGGGTAAC
GAACCTTCGTATCTTTCTGATGGCTCTGACGTTTCCACGTTATCAATTTC
GAATTCATTTTGTTCAATTCTTCCTTTTTCTGAATATTCACTTTTCTTTG
AACCTGAATCGCCACCATTTGCTTGCTTGTTAAGAATATTTGGTTTGGCA
TTATTAACTTTTTCCATCATATTAAGTGCTTTCAAACGTTCGAAAACGAA
GGCCCAATTCTCCGCACCACTTTTAACCTCTTTTACCGGATGGATAGGCG
ATTCTGAAATAACCTCGGACGCTTTTCGGCTGTTCCTTTTGCTACTAACA
TTTGAAATTCTGTCCAATGAGCTATTTCTTGCAGATATGTATTCCGATTT
CAAATCATCTTTGTCCTCAGTTATCCCTAAACCATCTTTAAGTGATCCTT
CTTGCCAGGTTTGTCGTGGAATATTGCTCGATCTACTCGTCTGATTCAAA
TGGTTGAATTTGTCTGATTTAGCAGAAAATGGTTGTCTCTCAGAATTGCT
TTGATCATATGTATCACCACTTTGCATTTCATTTCCAGCGTTAGAATAAC
CATTGTTTGTGGTTGTTATATCAGAATTTGAGCTTCCTTGTCCATGAAAC
CAACTGGTTTTGTCATTATCGCTGTCGTCAGATTCAACAATTATGTTTTC
ACTTTCTCCCTTGTATTTTCGTACAATTGCCAAACTGGTTGAAGATTTAT
GTTTCGATGGTTTGTCATTAGAAGACGTTCCATGATGTTCtatcaaattt
tcattattGATGGGAGACCGAAGATTGGTCGTTCCGAAATGCTCATTTGA
ACCTAGATCACCAGACAGGCTAAACGAGACTTTACGTCCACTCTTTCCAT
CACTACTTCTGGTTTCAGCAGTTTCCATATGTTTGACAGAGCCTGGAACA
AAATTCTCAGTGACAGACATCACATTCATTTTGCCATCAGAATCGTTGTT
GTTTAAATCAACACCGTCTTTGTTTGATTCTGCTATTTTCCTTATTATTC
GTTTCCAGTTCTCTTTACCTCTGGATGGACCTTCCAATACCTTACTTTGA
ACCATTTCAACATTCTCATTATCAGGACCTTCGAATACGGACTTTTTCCT
TTCCCGAAAAGTTCTGGATAATATGACATTTCCCTCATTGTAATTTCTAA
CTGATCCTTTTTTTTCGTTTTGGTAtccatcttcatttttcttgaaGTCT
TCATTCGTCCTGTCATTTTCATATCCAATACCATACTTATCTGCTGATTT
AGAAGGGTTCGGCAATAACATTTTCTCTTCCATACCATAGCCGACAGCAT
TGATATCACTGTTCTTTTCAATTTGTACACTCACTCTCCTATGTTTAATA
TCCAGGGTCTGGCTGTTATCATTATACCCAAAATCACCAGGTCCTTGCAC
TTGATCAAATGAATTTTCTTGGTGATAGCTGTTATCAACGAATCTTTGTT
TGAACTCACTTGGTGTCATTGTCATCACAACTTTATCAATATTCACGTCT
TCATATTGAGCTTGTTGACGACTTGGTAATTTCAAAGAATCTCCTTTTCT
AATGACAGTCTTAGTAGAACCTTCTTTCCTATGGTCTTTGGAGCTGTCTG
GCAATCCGAAATGTCTTTTATTTGGAATGTTTATATGATTGAATTGGTGT
TTCGACCTCCCATCAGCATTTAGATTAAAGATCTCGTTCAACGTAAAGTC
TTGATGCGGGATTCTTGGTTTAACAACACgaacttttcttctatctttaC
CTGCGTTTAAGTTAAACCCTTCCATTTCTTCCAAAGGGACGTGTATATAA
gaatgtatttttttctttgttttagagTTCCTTGGTTGAGTTTCTCTGAG
TTCAAAACGACACTGAAGATCTGGCTTGTCGCCGTTTCCTGCTCAAATCG
GCGTCGTAACCTTCACGAAGTTCATCGTAATCGTAACAAGAATCAGTCGT
AAAGTCGTAATTGTAATCAGCAGCGTCGTAAGTGTGATCCACGGTATAGT
TTCGTGTAGAATTGATCATCGCTCTAGTTGTCTGCATCAACTGCAGTAga
agttttaagttttttaatcaTTTAAGACTGCTTTTGCTTGGCaagaatta
aatttttttggttcCCTTTGATAACCATACATACAAAACCAACTCCAGTA
ATCACAAAAGTTTCAAAGTACCTCTCCAAAAACACAAGACACAGGACAAA
ATATCTTCTTGTTTTGCAAAACAACTTGAAATGCCACCTGGTGATAAATC
AGATAACCAACTAGTTCATGtgtcaaaaagtgaatttttgatttccaaac
aTGATCACTGTTAAATTGAATTTATTCTACTTTTATGATGTTCTTGGATG
TTCGCATCtatatttaaaacttttgggACCTCCTAC

Run BLAST on NCBI

transcript from alignment at scaffold_60:489297..492359-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071352 ID=TCONS_00071352|Name=TCONS_00071352|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at scaffold_60:489297..492359- (Clytia hemisphaerica)
TTCTGATTTACATTTTCTTTCTTAGCTCTAAAATTACTAATAAATCGACT
TCATGAAAATAGAAATCGTCATGCAATCACTATAATATCTGGTCCACTGA
AGTATCTGAAATGAATCGCGATACATTTCACTGATGGTAATATCGTCCAA
CGATTGTAAGTATTTTCTAACCAATCTAACATCTAAGTACGGTTGCTGCA
ACACATTTACTCTTAGGTGCCAAATAAACGCCCCCCGGACCTTATTAGGA
CCCCCCGTTTATTAATTTTTAAAAAAATTCCCAGCTACAAAAAGGAAAAT
TCCTTGTTTTACTCTAAAAAGCCTAAATTTAGTATATTTTTACCCTTTTA
AGGGNTTGCTGCAACACCTTTATTGATTTCGTTTATGGTAACGGAAAGAA
TATAATTCTATCTTTTCTGTCTTCTAAACGCATGCTTAACTTTAGCCCAT
AGTGACATTTTCTTTTTCTCTCCATCGTAATCATAATGATCCTTATAATC
GTAGTCGGGTAACGAACCTTCGTATCTTTCTGATGGCTCTGACGTTTCCA
CGTTATCAATTTCGAATTCATTTTGTTCAATTCTTCCTTTTTCTGAATAT
TCACTTTTCTTTGAACCTGAATCGCCACCATTTGCTTGCTTGTTAAGAAT
ATTTGGTTTGGCATTATTAACTTTTTCCATCATATTAAGTGCTTTCAAAC
GTTCGAAAACGAAGGCCCAATTCTCCGCACCACTTTTAACCTCTTTTACC
GGATGGATAGGCGATTCTGAAATAACCTCGGACGCTTTTCGGCTGTTCCT
TTTGCTACTAACATTTGAAATTCTGTCCAATGAGCTATTTCTTGCAGATA
TGTATTCCGATTTCAAATCATCTTTGTCCTCAGTTATCCCTAAACCATCT
TTAAGTGATCCTTCTTGCCAGGTTTGTCGTGGAATATTGCTCGATCTACT
CGTCTGATTCAAATGGTTGAATTTGTCTGATTTAGCAGAAAATGGTTGTC
TCTCAGAATTGCTTTGATCATATGTATCACCACTTTGCATTTCATTTCCA
GCGTTAGAATAACCATTGTTTGTGGTTGTTATATCAGAATTTGAGCTTCC
TTGTCCATGAAACCAACTGGTTTTGTCATTATCGCTGTCGTCAGATTCAA
CAATTATGTTTTCACTTTCTCCCTTGTATTTTCGTACAATTGCCAAACTG
GTTGAAGATTTATGTTTCGATGGTTTGTCATTAGAAGACGTTCCATGATG
TTCTATCAAATTTTCATTATTGATGGGAGACCGAAGATTGGTCGTTCCGA
AATGCTCATTTGAACCTAGATCACCAGACAGGCTAAACGAGACTTTACGT
CCACTCTTTCCATCACTACTTCTGGTTTCAGCAGTTTCCATATGTTTGAC
AGAGCCTGGAACAAAATTCTCAGTGACAGACATCACATTCATTTTGCCAT
CAGAATCGTTGTTGTTTAAATCAACACCGTCTTTGTTTGATTCTGCTATT
TTCCTTATTATTCGTTTCCAGTTCTCTTTACCTCTGGATGGACCTTCCAA
TACCTTACTTTGAACCATTTCAACATTCTCATTATCAGGACCTTCGAATA
CGGACTTTTTCCTTTCCCGAAAAGTTCTGGATAATATGACATTTCCCTCA
TTGTAATTTCTAACTGATCCTTTTTTTTCGTTTTGGTATCCATCTTCATT
TTTCTTGAAGTCTTCATTCGTCCTGTCATTTTCATATCCAATACCATACT
TATCTGCTGATTTAGAAGGGTTCGGCAATAACATTTTCTCTTCCATACCA
TAGCCGACAGCATTGATATCACTGTTCTTTTCAATTTGTACACTCACTCT
CCTATGTTTAATATCCAGGGTCTGGCTGTTATCATTATACCCAAAATCAC
CAGGTCCTTGCACTTGATCAAATGAATTTTCTTGGTGATAGCTGTTATCA
ACGAATCTTTGTTTGAACTCACTTGGTGTCATTGTCATCACAACTTTATC
AATATTCACGTCTTCATATTGAGCTTGTTGACGACTTGGTAATTTCAAAG
AATCTCCTTTTCTAATGACAGTCTTAGTAGAACCTTCTTTCCTATGGTCT
TTGGAGCTGTCTGGCAATCCGAAATGTCTTTTATTTGGAATGTTTATATG
ATTGAATTGGTGTTTCGACCTCCCATCAGCATTTAGATTAAAGATCTCGT
TCAACGTAAAGTCTTGATGCGGGATTCTTGGTTTAACAACACGAACTTTT
CTTCTATCTTTACCTGCGTTTAAGTTAAACCCTTCCATTTCTTCCAAAGG
GACGTGTATATAAGAATGTATTTTTTTCTTTGTTTTAGAGTTCCTTGGTT
GAGTTTCTCTGAGTTCAAAACGACACTGAAGATCTGGCTTGTCGCCGTGT
GAGTATTTTGAGTCAGGTTCTCCATGTAAATGTCTTGGAGAAATGTGTCT
TTTTGTCTCGATATTGTTTTTCCGTCTTCTTATTTTTCTAACACTGTGCT
CAACATCATTTGCTTTGTTATCTTTACGCCTCATTATTATTATTTCTTTT
CCTTTTATATAGTTCCTGCTCAAATCGGCGTCGTAACCTTCACGAAGTTC
ATCGTAATCGTAACAAGAATCAGTCGTAAAGTCGTAATTGTAATCAGCAG
CGTCGTAAGTGTGATCCACGGTATAGTTTCGTGTAGAATTGATCATCGCT
CTAGTTGTCTGCATCAACTGCAGTAGAAGTTTTAAGTTTTTTAATCATTT
AAGACTGCTTTTGCTTGGCAAGAATTAAATTTTTTTGGTTCCCTTTGATA
ACCATACATACAAAACCAACTCCAGTAATCACAAAAGTTTCAAAGTACCT
CTCCAAAAACACAAGACACAGGACAAAATATCTTCTTGTTTTGCAAAACA
ACTTGAAATGCCACCTGGTGATAAATCAGATAACCAACTAGTTCATGTGT
CAAAAAGTGAATTTTTGATTTCCAAACATGATCACTGTTAAATTGAATTT
ATTCTACTTTTATGATGTTCTTGGATGTTCGCATCTATATTTAAAACTTT
TGGGACCTCCTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044339	XLOC_044339	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071352-exon-scaffold_60-1575043694:492156..492359	TCONS_00071352-exon-scaffold_60-1575043694:492156..492359	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1575043694:489962..491992	TCONS_00071352-exon-scaffold_60-1575043694:489962..491992	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1575043694:489297..489797	TCONS_00071352-exon-scaffold_60-1575043694:489297..489797	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1510915933:492156..492359	TCONS_00071352-exon-scaffold_60-1510915933:492156..492359	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1510915933:489962..491992	TCONS_00071352-exon-scaffold_60-1510915933:489962..491992	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1510915933:489297..489797	TCONS_00071352-exon-scaffold_60-1510915933:489297..489797	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1491911889:492156..492359	TCONS_00071352-exon-scaffold_60-1491911889:492156..492359	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1491911889:489962..491992	TCONS_00071352-exon-scaffold_60-1491911889:489962..491992	Clytia hemisphaerica	exon
TCONS_00071352-exon-scaffold_60-1491911889:489297..489797	TCONS_00071352-exon-scaffold_60-1491911889:489297..489797	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:489297..492359 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524099	0	0.143066	0.163798	0	0	0.0248066	0	0.092568	0.162965	0.0710032	0.241247	0.241183	0.274473	0.133733	0.371424	0.181563	0.188555	0.420193	0.544746	0.030783	0	0.338971	0.501182	1.15455	1.80586	0.0422939	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00071352 vs. Swiss-Prot (Human)

BLAST of TCONS_00071352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00071352 (transcript) - C. hemisphaerica