TCONS_00071368 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071368
Unique Name	TCONS_00071368
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1466

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_60:767236..771320-

transcript sequence

>TCONS_00071368 ID=TCONS_00071368|Name=TCONS_00071368|organism=Clytia hemisphaerica|type=transcript|length=1466bp
ATAGAGTTgataaaattgcaaaaaatatgaATGAAGTAGCAATATGTCCA
AAAGAAGAGGCTTCAGTTGTCCAGTGTGTGATTCCCTTTATGAAGAAAAT
GAACTAGAAGAACATGTTCAAAGTCACTTCAATGATAACCACAGATGGAA
TGAAAATATGAAGAAGTACAATGTCAGTTTGATGGGTGTGGTTTGTTGGt
tgATGTGAAATGTCTTGAAGATCACTTACTTGCACATGAGTTTGGAGAGA
AAGCTGACTCAAGCCCCATTAATGATGATTCTTTGCTGGCAGCTGCATTG
CAGGAAGAAGAAACTAATGACTTGACAAGAAAAAATGATAGATGCGCAGA
AAATGACATTCAGCTTGCAAAAGACTTACAAAAACAAGCAGAGAAAGAGC
TcgaggaaaaagaattcaaaaaattacAGGAAAAATATGGAATGACTAGT
AATGGTGGTTACACTGAGCAATTCAATGAAAAGATGGGTAAACAAGTTGG
AAGGAATGTTTCAATTGGAGATTACTTTCAGAAGAAAGCAAACATGATGT
GTTCAATGATGACTGGAGAAGATACTAATGAAACAAGAACTACTGGAACA
ATTACAGTATTAACAAATTACTATCAATCAGGAAGTATAAAGGGTATTTC
ACAAGTCCATTTAAGCTCTGACACAAATCATTATGCAGCTGATGTATCAG
ATAATGGTTGGGGCTGTGGTTATCGAAACACTCAGATGCTTCTTTCCTCT
CTCCTGTTAAATCCTTTATATAAAGATCACATAGAACAAAAACTGGGCAT
GTTGACAGTACCTTCGGTCCCAAAAATTCAATCGTGTATAGAGGAAGCTT
GGAAAGAAGGATTTGATCAAAGTGGCAAAGAACAGTTGGGTGGTAAGTTa
tccaaaacaaagaaatggaTCGGCACAACTGAAGTTGCTTCATTGCTTCG
GTGGATGAATATAAGAGCGCGGATTGTGGACTTTCACAAGTCTCAAAACA
ACTTACATCCTCTGATGTTTCAATGGGTTAAAGATTACTTTACACAAAAC
TCTGATGAACAAATACCACCATTGTACATCCAACATGAAGGCCACAGTAG
AACAATTATCGGTCTAGAGGAATACTCTGGATCAGCAGAAAACCAACTCT
TAATATTCGATCCGTCTAACCATAAAATGCAATCAATAAAAAGCATTAAA
CCACCTTACACCAAAATACAAACAAAAGCTTTGAGGAAATCCTTACACCA
AATGAAGTATAAACAATTTCAACTTGTCTTCATTGATGGTGTTTATAAAT
CAGAATGTGATCGAAATGCAGGCAAGATTCTGTCTTCAATCAGGATCCCG
CCGGATTAAAAAGATCATTGAGAATTTGTTTGTTATTATTTAGCaccttt
tgtatatttttttcaaaaaaatattttatggcagtattttatttatattt
ttaccaaaaacagaaa

Run BLAST on NCBI

transcript from alignment at scaffold_60:767236..771320-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071368 ID=TCONS_00071368|Name=TCONS_00071368|organism=Clytia hemisphaerica|type=transcript|length=4085bp|location=Sequence derived from alignment at scaffold_60:767236..771320- (Clytia hemisphaerica)
ATAGAGTTGATAAAATTGCAAAAAATATGAATGAAGTAGCAATATGTCCA
AAAGAAGAGGCTTCAGTTGTCCAGTGTGTGATTCCCTTTATGAAGAAAAT
GAACTAGAAGAACATGTTCAAAGTCACTTCAATGATAACCACAGATGGAA
TGAAGTTGGTAATTGTCCTATACATTTTGTTTTGTTATTTACAAAATTTA
CAAGTTTTACATTTCTAGGACGAAAGATTTGAATGATGAATAATCCTCTT
TAATGTAACTTTTATCTTTGCCCATTAATACCCATTAATTACCCATCATT
ACCCATTAATTTTGGTTACTATTTATAAAATTTTGATTTGCACAACCTTT
ATTAATTCTTGCATACACAGAGATTAAATTAGACAAAAATAAGTTAAAAA
TTGCGCTTTAGGTCCACCTCCATGTGTATTACAGCCAAATTGTACATTTT
AGAGGTTTTCTTTTAAAACAGTAAAATAATTCACTTGTGTTTTTAATCAT
AGAATATGAAGAAGTACAATGTCAGTTTGATGGGTGTGGTTTGTTGGGTA
CAGTATTCATGTTTTTATTAAAGATCTTACTGTATTTGAGATTGATTAGA
TGATTTTGTTTAGGAATATAAATTGAAATGCTAACCTTTCTTTGCTGATC
TTATAGCCAATTTTACTTTGTGATAAATTATTGATGAACTGCTGGATAAA
GTTACTATATAAGATATAACCTGCAATGTTTTTCAATGGTTTCAATTTTA
CTTGTTTTATTTTTAGTTGATGTGAAATGTCTTGAAGATCACTTACTTGC
ACATGAGTTTGGAGAGAAAGCTGACTCAAGCCCCATTAATGATGGTAAAT
TTTCATTACTATAAGACTTGAAGACATTTTAAAGTTAAATACATACTGTT
TGAAAGATATTCCAAGGTAGATTATTTGAAAGATTGAAAATTTTTATAAG
AATGAAAGTTGAAGGAGGTTGATGAAAAAAAATTAGGATTTACTATCTCA
ATAAGCTCTTTTCAACCATTTAATTCTTTTAGATTCTTTGCTGGCAGCTG
CATTGCAGGAAGAAGAAACTAATGACTTGACAAGAAAAAATGATAGATGC
GCAGAAAATGACATTCAGCTTGCAAAAGACTTACAAAAACAAGCAGAGAA
AGAGCTCGAGGAAAAAGAATTCAAAAAATTACAGGTTTAGAAAAGTTATC
CAGTGTTGTAACCTGTTGCTACACAACCTGTTGTAACCTGATAACAACTG
GTCATAATTCTCTTACTGACAAAAAAAATTAACCATCTGAGGAAAATAGT
CTTCCCGTGTAAAATTCTACAGTAAGAATCTTGTTGTATGTTGGAAAATC
AAAAACTAAATTTTCCTAATTGCCCTATTTCAACTTTGTTTCACTACTAC
CCAGCCCACTCTTTTGGCAATGCATGGACCTTAAGAAAATGAGGTTGCAT
CTAAAAAAGTATGAACTTTCAATACATCCTTATCCTTGGAATTCTTATCC
AGTTTGTCTTCTTTTTTCATTTTGCAGGAAAAATATGGAATGACTAGTAA
TGGTGGTTACACTGAGCAATTCAATGAAAAGATGGGTAAACAAGTTGGAA
GGAATGTTTCAATTGGAGATTACTTTCAGAAGAAAGCAAACATGATGTGT
TCAATGATGACTGGAGAAGATACTAATGAAACAAGAACTACTGGTATTTT
AATGATACCCCACAAAATTTTGTGGTTTTGTCAAAAAACAGCAAAGTTGA
AATCCTTGAAAATTTGTTTTGCAAAAATTTCTTCTCGCAAAAATTCTTCC
CTTGGGTACTTTTTATTTACTACTGACTTTTTTCATTCAATATTTGGTTT
GTTTAAAATCGAACAAAATTCTATCAATTTGAATCACTGGAAGACAACCT
TTTGGTTTGACCATAGCATAACAAGTGCAGTTATTTTTTTGTCTTATGTA
TCCTCTCTTACAGGAACAATTACAGTATTAACCAATTACTATCAATCAGG
AAGNCTCTCTTACAGGAACAATTACAGTATTAACAAATTACTATCAATCA
GGAAGTATAAAGGGTATTTCACAAGTCCATTTAAGCTCTGACACAAATCA
TTATGCAGCTGATGTATCAGATAATGGTTGGGGCTGTGGTTATCGAAACA
CTCAGATGCTTCTTTCCTCTCTCCTGTTAAATCCTTTATATAAAGATCAC
ATAGAACAAAAACTGGGCATGTTGACAGTACCTTCGGTCCCAAAAATTCA
ATCGTGTATAGAGGAAGCTTGGAAAGAAGGTAAATATGAATATATTATGT
TCCCCCAAACCTTTAACCTTGTTAGAAATTGGTTTTCAATCTTCGTGTTA
ATGTTTGGGTTTTTCAAATAATAAAGGTTGTAGTTAATTAAAATGGTTGA
TTTAATTTTTAATCTGTCCATTGAAATATTTGAATGCACACACAGCATGG
CTTCAGATATAACACAACATTATGTCATTCACTTGAAATTGCATTTTTCA
AACATTACACTATGAAATTGTATTCTAAATCTTTATCATTTTAGGATTTG
ATCAAAGTGGCAAAGAACAGTTGGGTGGTAAGTTATCCAAAACAAAGAAA
TGGATCGGCACAACTGAAGTTGCTTCATTGCTTCGGTGGATGAATATAAG
GTAAGATGATAAAAGGTTGTTGTGAACAATCTTTGTTTACTGCTGAGAAT
AAACCGATACTAAGTGAATGAATCTAGTGCTCTCGGGAAATTTTCATGAA
ACATTCCTTTAGCTGTTTGACAAAAGTGTCATTGATAATCAAATCGGTAA
TATTTCCTTCCTTCTCTTTAAGAGCGCGGATTGTGGACTTTCACAAGTCT
CAAAACAACTTACATCCTCTGATGTTTCAATGGGTTAAAGATTACTTTAC
ACAAAACTCTGATGAACAAATACCACCATTGTACATCCAACATGAAGGTT
AATGTTTCTTACAGGAAAAGATTTTCAATGTGTTATAGTAACTCTATAAT
AAGAGGGGGGTTTATCTAAAGAATCCTGCATTTACTAGAAATAGAGAAAA
AGAACGACAAATTTCATAAAAAACAACAAATGTTGCCATCCACAACCCCC
ACCGTGACTGTACCACCCCTACGTATTCATTCCTCCTTGATTATCACGGG
AATTAACTAAATATGGTTTGAAAAACGACAAATTACGCATGCGTGTTACA
ATGCAGGATTCTTTAGAGAAACAGACTGTAAGGCTCAAGGCTCAATTCCT
TGTATTTTAGAGCGCCATAATTTAGTCTCAGACTCAAGAATATTTAAATA
TTTTGGATTGGCTTTAAAACTCGTTTAACAGCAGTGCCTTTAACCATGAA
GGTTAGGGTTATAACAATTTTATCAAAATAAAGTCTTTATTTATTGCGTG
TAGTTTATCTTATATCTTCAACTATGTAATGTAACTGCTTGACGTTAGTT
AATTTTTTACCTTTAGGCCACAGTAGAACAATTATCGGTCTAGAGGAATA
CTCTGGATCAGCAGAAAACCAACTCTTAATATTCGATCCGTCTAACCATA
AAATGCAATCAATAAAAAGCATTAAACCACCTTACACCAAAATACAAACA
AAAGCTTTGAGGAAATCCTTACACCAAATGAAGTATAAACAATTTCAACT
TGTCTTCATTGATGGTGTTTATAAATCAGAATGTGATCGAAATGTAAGCA
GAATTGTTCAGTTTTTCATAAGCTTGAGTATGAATTGCAAACAGCCTATT
TCACTTGCTTCTTGATTTACCAGCTTATCAACAATCCAGTGTTGCAGATT
GTTAAGAAATTTCGCCTCAATAATAATAATAATCCCTGAAAGAACAAACT
TAAATGAAAACCTAATTTTAGATGTTTCGTATAGATTCAACAAAGCTGTG
TTTTAGCACTGTTAATTTAATCTCTTCATATTTCAGGCAGGCAAGATTCT
GTCTTCAATCAGGATCCCGCCGGATTAAAAAGATCATTGAGAATTTGTTT
GTTATTATTTAGCACCTTTTGTATATTTTTTTCAAAAAAATATTTTATGG
CAGTATTTTATTTATATTTTTACCAAAAACAGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044350	XLOC_044350	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:767236..771320 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.17	21.9597	41.7359	22.2228	24.028	15.4551	10.8487	14.4638	11.0569	10.774	10.3196	8.74549	4.54104	6.16976	6.84571	4.68632	8.97627	9.61153	3.48426	7.33343	6.34062	5.70722	17.9526	11.8252	10.6994	4.35173	5.48473	3.63001	14.8392	12.735

Blast

[Close]

BLAST of TCONS_00071368 vs. Swiss-Prot (Human)
Match: ZUFSP (Zinc finger with UFM1-specific peptidase domain protein OS=Homo sapiens GN=ZUFSP PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.520e-65
Identity = 149/406 (36.70%), Postives = 222/406 (54.68%), Query Frame = 1

Query:  187 CGLLV-DVKCLEDHLLAH----EFGEKADSSPINDDSLLAAALQEEETNDLTRKNDRCAENDIQLAKDXXXXXXXXXXXXXXXXXXXXYGMTSNGGYTEQFNEKMGKQVGR-NVSIGDYFQKKANMMCSMMTGEDTNETRTTGTITVLTNYYQSGSIKGISQVHLSSDTNHYAADVSDNGWGCGYRNTQMXXXXXXXNPLYKDHIEQKLGMLTVPSVPKIQSCIEEAWKEGFDQSGKEQLGGKLSKTKKWIGTTEVASLLRWMNIRARIVDFHKSQNNL--HPLMFQWVKDYFTQNSD-------EQIPPLYIQHEGHSRTIIGLEEYSGSAENQLLIFDPSNHKMQSIKSIKPPYTKIQTKALRKSLHQMKYKQFQLVFIDGVYKSE---CDRNAGKILSSIRIP 1350
            CGL+  +   L++H+  H     F +  D    + D  LA  LQ+EE  D  R+++   +   +  K                 LQ +YG+ ++GGY +Q    M  +V R  +   ++ ++KA+MM S+  G D  +T+T+G I  L  YYQ+ +   + +V LSS  +H+ + + D GWGCGYRN QMLLSSLL N  Y D ++   GML +P +PKIQS IE+AWKEGFD  G  QL  +L  TK WIG  EV  LL  + ++  IVDFHKS   L  HP +F+W+ +Y++   +          PP+Y+QH+GHSRT+IG+EE        LLI DP     +  K +K        K LRKS+  +K+KQ+Q++ ++G    E     R A ++ ++ +IP
Sbjct:  198 CGLICTNYHILQEHVDLHLEENSFQQGMDRVQCSGDLQLAHQLQQEE--DRKRRSEESRQEIEEFQK-----------------LQRQYGLDNSGGYKQQQLRNMEIEVNRGRMPPSEFHRRKADMMESLALGFDDGKTKTSGIIEALHRYYQNAATD-VRRVWLSSVVDHFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYNDCLK---GML-IPCIPKIQSMIEDAWKEGFDPQGASQLNNRLQGTKAWIGACEVYILLTSLRVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGSPKVVCTSKPPIYLQHQGHSRTVIGIEEKKNRTLC-LLILDPGCPSREMQKLLKQDIEASSLKQLRKSMGNLKHKQYQILAVEGALSLEEKLARRQASQVFTAEKIP 578

The following BLAST results are available for this feature:

BLAST of TCONS_00071368 vs. Swiss-Prot (Human)

BLAST of TCONS_00071368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZUFSP	1.520e-65	36.70	Zinc finger with UFM1-specific peptidase domain pr...	[more]

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TCONS_00071368 (transcript) - C. hemisphaerica