TCONS_00071640 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071640
Unique Name	TCONS_00071640
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2612

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_63:197809..203242+
coding sequence from alignment at scaffold_63:197809..203242+

transcript sequence

>TCONS_00071640 ID=TCONS_00071640|Name=TCONS_00071640|organism=Clytia hemisphaerica|type=transcript|length=2612bp
ATAAAAGTGTCGGCATTCAGGGATTGAAAGCTGACGTTCGAAAATCAAAT
GTAACTAATNCACTTTCCGCTCGCGATCCTTATAAAATTGCTGGGCATAA
TAACTACAACCACAATTTGTTATCGATTGAGCCGCCTCTACGGATGCTCT
TAAATGATGCACTTGTAGCCGCCTTTGCAGGTTTTTTAAAAAAGCGTTAC
GTAAAGTAGTATACACCCTTTCTCTTGAATGGACGAAAGGTGAAATCGTA
GAGCTGGCTAATGGTTGAAATGTCTAATTTTCGCCGAGAAGACCGATTTC
AGCATTTCACATTATAAAATTATCAACCAGGCGATATTCTCTTTGGAAAA
CTTTTTAGATTTTGGATCTTCATCTCCTAACTTGGCTTAGTGTTAATATT
GAAACTCTACATTGCTGAAGTAAGTCACAGAGCACTTAAAACCATTggtg
gttttaaggtttgtgcATATTATAATTCCCCTTTTTCTCCTTTATTGTGA
GTTAGTTTGTAGTAAAGGTTATTATGAGTGTTTATTTATCATCGATCGTC
TCTTTCTCAGTTCACAACCCTTACAACAATCAAATGTATTTATATGTCGG
AAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGT
TNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCTCAGTTCACAACCC
TTACAACAATCAAATGTATTTATATGTCGGAAGGAAAGATGCTGTTTTAC
TTTTACAATGGTATGAACCACTGCAAAAGTTCATGATCGTCAGGgatttc
gaAGTGAAATTTCCACCCAGTTTAAATATATTCGAACCAGTTGTTGTGAA
AGGATCGGAGTATCCTGTCCTGTGTGTTGGTGCTTATCAATTgcCAAATG
GGGACATCAAGATCGATCAGCTCGATTTAGAAAATGGCACGCCATGGGAG
ATACGCAAAGATCTAAAGCGTTTGAAGATTAAAACTTTCTCGCAACTTGA
AAAAGATGTGATTTTACTTGCATATGAAAATAAAGTTATGTTTGTTGACA
TTGATGGGAAGAAGTTACaagttcaaaacaaattaacTGAGCTGTCCTTC
GATTATCCTGTTGAGGCTGCTGtTTGTTTGCCTGGCAATGTCATGACGTT
CAATGCAAATGGTATACAGGGGAAAAGCTTGAGCGATAGCCAGGTCACAG
CACAGTTCACCGACCTTTCACGGAAATACAAATTACTCGGATCTGACAGA
ATTGTTGTGATCGAGACGAAGGTTGTTTCCGAAAAcCATTCAAATCTATA
CATATTAGCTAGCGGTTGAGAATCTGAAAGAACGCATGCGCACAGGAAAA
TATTTCGTTCGTTTGATGAATGGAATCTAGAACTAAAAAGGAGTCGTGTG
TTCGAGTAGAAGAAATGTTATCTCGGCCAAACTGATGTACAACATctaga
aagtgttgaaaatagtGGTTTGATTTTATTTACAGTTCTTTGGTGGTCTG
TTTCATTGGAAGAATGAAATCAAAtaatcaaaaactaaaactttgttAAA
AACAAATTACGGAAAAGATTAGAATCTAAAACGATgagtttaaaatttta
tattgtGTATAGGTTTGGTAGTAATtagtattgattttttttaaataaga
ttttttggtataatattcaaaatatttcaaaaaatggggGTAACGTAACG
TAGTACTTTGTACTCACTATTTAAAACTCTTCTGATATTTGATTAGAGAT
ATCGTTTAATTTTCCACATAAACCCCGCAAAGGATTTAGTTTATCCTTTT
CGAACGGGAAACCTTACAAAATCATCAcatgaaaaatagcataattttAT
GTTTGAAATTCTAGGCATAGTTTGtaaaatagtttattttttcttgcaaa
acttgattaatttaaaaatgttatttttaaaatcttttgttatagctctt
tttctttgtttatttttttgccgttattatttatcttatttttcttgttt
tttttagaaatgtcTCTTTTGTAACATTTGTAatcatttatcttttcttt
tgaaaagtaaCATAGGTTTATAGTAAGCTAGTAAGCTAAAGAATTGAGCT
AGACTTGGACATAAGTTGACTAAGCGTATGTAATTGAAAGTATAATATAT
TTAgctccgggggggggtactataGGTTTACGAAATGACAGGGGTGccgc
ccgattttcgaaaattggataTTTTAGGACCGTTACCGCGGCTTTTTTCC
TAAAATCTAGCCTTTTTAGGGATAAATATtggagtttttgtttttttgta
accCCTAGGGGACATTTTgcgacctttagagagacttggagggtccaaaa
aaggcacttttaaGGGCGATATACACCCGtacctccatttgcctaagtac
cccctcctcGTTCACGACCGGAGGATCACATTATCTAAGCGTCATAATTT
TCAGGGATTTGTTGAAGGAAATTAAAACCCTTTGGTGAGAATTTATCTAA
CTTAATATACGTTTCGTCTTAGGTTTTAcgttttatatcaaaattttcaa
ttttattataCACTTTGTACTGTTGACCAGTTATTAgaaccaaaaaaata
ttttgtttgaaa

Run BLAST on NCBI

protein sequence of TCONS_00071640-protein

>TCONS_00071640-protein ID=TCONS_00071640-protein|Name=TCONS_00071640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MSEGKMLFYFYNGMNHCKSXVSVYLSSIFSFSVHNPYNNQMYLYVGRKDA
VLLLQWYEPLQKFMIVRDFEVKFPPSLNIFEPVVVKGSEYPVLCVGAYQL
PNGDIKIDQLDLENGTPWEIRKDLKRLKIKTFSQLEKDVILLAYENKVMF
VDIDGKKLQVQNKLTELSFDYPVEAAVCLPGNVMTFNANGIQGKSLSDSQ
VTAQFTDLSRKYKLLGSDRIVVIETKVVSENHSNLYILASG

Run BLAST on NCBI

transcript from alignment at scaffold_63:197809..203242+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071640 ID=TCONS_00071640|Name=TCONS_00071640|organism=Clytia hemisphaerica|type=transcript|length=5434bp|location=Sequence derived from alignment at scaffold_63:197809..203242+ (Clytia hemisphaerica)
ATAAAAGTGTCGGCATTCAGGGATTGAAAGCTGACGTTCGAAAATCAAAT
GTAACTAATNCACTTTCCGCTCGCGATCCTTATAAAATTGCTGGGCATAA
TAACTACAACCACAATTTGTTATCGATTGAGCCGCCTCTACGGATGCTCT
TAAATGATGCACTTGTAGCCGCCTTTGCAGGTTTTTTAAAAAAGCGTTAC
GTAAAGTAGTATACACCCTTTCTCTTGAATGGACGAAAGGTGAAATCGTA
GAGCTGGCTAATGGTTGAAATGTCTAATTTTCGCCGAGAAGACCGATTTC
AGCATTTCACATTATAAAATTATCAACCAGGCGATATTCTCTTTGGAAAA
CTTTTTAGATTTTGGATCTTCATCTCCTAACTTGGCTTAGTGTTAATATT
GAAACTCTACATTGCTGAAGTAAGTCACAGAGCACTTAAAACCATTggtg
gttttaaggtttgtgcATATTATAATTCCCCTTTTTCTCCTTTATTGTGA
GTTAGTTTGTAGTAAAGGTTATTATGAGTGTTTATTTATCATCGATCGTC
TCTTTCTCAGTTCACAACCCTTACAACAATCAAATGTATTTATATGTCGG
AAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGT
TNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCTCAGTTCACAACCC
TTACAACAATCAAATGTATTTATATGTCGGAAGGAAAGATGCTGTTTTAC
TTTTACAATGGTATGAACCACTGCAAAAGTTCATGATCGTCAGGGTAAGT
ATGAAACTGTTCATAGATTGATAGTTTAATCATCTTCTAAGCCTATCTGT
AGATCTAAGAATTTCAcagtatttgaaaaaaagtgaagaaaaacggACCG
AAAAGCgtacttaacttttttgaacaaTGTACCAAATGATGAATCGATTA
CTACGACTACGGTTGttttgtagcttttgattttgaaaaattctgccATG
CGTCTTTTGCGTGAAGAAGATTTTGGtacaagcaagaaaaagaaaggttt
cgctggattttccaaatttagtttttatcgCCAAAGATTACCAGATTTCC
AAGAGGGGAATTTTTTCGACCGGACGTTTTCCCTGATTGCCCGGTCATTG
TTGTGTtacttaatatttttatttttcaggatttcgaAGTGAAATTTCCA
CCCAGTTTAAATATATTCGAACCAGTTGTTGTGAAAGGATCGGAGTATCC
TGTCCTGTGTGTTGGTGCTTATCAATTGTAAGTTATAATGCAACTTTATA
ACACAACGTCTTATCGGATACATCCATCTCTAGCCCCCGTCTTTAAAATT
GTTCTCAAAATCCGCCCTTATCCTTAAAACGCGTCTTTAAAAGTAGAGTA
CATTGCCGTATTGCTATTTGATCCTTACAGTGTACTTTCAGATGCCTTAA
AacttaccttgagtgcccccacGGACCTAAGTTACGGATCTATGACACTG
TTGAAGACTTTATGACACGGGTAGTAAGTTATATCAATGATTAACTATGa
ccttttttattattttcaggcCAAATGGGGACATCAAGATCGATCAGCTC
GATTTAGAAAATGGCACGCCATGGGAGATACGCAAAGGTAAGGTTGTTCT
GATATTTTATAACATTTCGAATACAATTGCTTTAGAGATCTACACGAATC
TTTTGCAAACTTTTCCGTCGCAGACGGGGCTTGAAATAAGCAAAATCTGA
AGAAGCTTAGTTAATTTGTTACGAAAAGTCCATTTTGCATCTGACACAAA
AATGAGTTCTTTCATCATTGAAAGAAATTCTGTCTTCCGAAATAATCCTT
TTTATTCTCCTTTCAGATCTAAAGCGTTTGAAGATTAAAACTTTCTCGCA
ACTTGAAAAAGATGTGATTTTACTTGCATATGAAAGTAAGTACCGCTTTA
ATATACTAATCATGGTTTTGATTTAAGACAAAAGGGGGAAAGCTTTTAAA
GCACAAACAATGTTAAAGTGATGTAAATGCTTTCTGGAACGTAGAGTTTT
AACACTTTGAGGCAGACTTGAGACTTACCATCATAAGATCTCATAATCCA
AAAGCTCAGAAATGATCAAGTAAGGCTGAGAACACAGCATGGAAGCAAAT
AGGCcctttcaaattgaaatttcctatgaaagaaagtggaaatGCCGAAA
TAGCCATTCCCGCCCgatctttaaattttgaaaaacggcTAAACACCCAG
AAATATCacattttgaccatgattgtggACATTTAATTTTTTGTAGAATT
CTCAAAAGTTTGGAAACAAATCTATTCGAGTTGTTAACTCGACCTATCTA
AAATCCTATCCTATTGATGACTTAAAACCAAGTATCgagaactaatcgaa
cttctcGAACTCCTGcacaaatttttggaattttctaAAAGTTCAGTAAA
GGAATTACTTACTTTACTTGTTCGAGTAAGTTCCAGTAATTCAATTCTCG
AACTGTTCGAGTAATGGGGGTCTGGTCTGGTCAATCTAATTCTCCTTTCC
CTGCCTCAGATAAAGTTATGTTTGTTGACATTGATGGGAAGAAGTTACaa
gttcaaaacaaattaacTGAGCTGTCCTTCGATTATCCTGTTGAGGCTGC
TGGtatgtagatttttttttcgaattcccgaatttttttctcaattcttt
ACCTCATCCTTGAAGAGTAGATGCACTCTCTTTTTTCATCAGGATAATTC
TTTAAAGAGCAATGAGGCCCAAGTTTTAATACGAGCCTGAACCTTGACCC
TAAATGGTTTCATTTAAACAAGATTAACGTTCAAATTGGTCAAGGGTATA
AAGGCTATAAGATACCTCGAATTAGGTGTCAGAAAAAAAGAGCCGATCCT
CGACAAAAGTTACTGATTTCAAAATCATGTAAACTGTTAGTTAGTGGGTT
AGATTGTTGCTGGTGAATTTTAATAAGAATCTTTCATAATGTTTTCTATT
GGAGATTTACTTGTCATTCGTCTAGCTTCAATGCTTACTTCCAAGGCTAC
ATCATTCTAAATAGAAAGCCTATGTGTAAATTTAGTGTCaaataaatttc
tatttttatcatttttttagtTTGTTTGCCTGGCAATGTCATGACGTTCA
ATGCAAATGGTATACAGGGGAAAAGCTTGAGCGATAGCCAGGTAAGGAGT
ATAAAGAATCTGTCTTCAATTCTAGAATGTACTATCTAAAATAAACTGTT
TTAGAAGTAGAGCGGCTTATGGCTCATGTCTACTTCGGCTTTAATAATAG
TTTCCTTTTTATGGCTCGAGTTCTTACAGGGGTTGGAAAATCATTTGATT
TGTTGAGGTCTTTAGGAGTTCGAGTTTATATGAATTGTTGGTTGAAGGAA
TAAGAAAAGGATGTTTGAGTTATGGATAATCTTAATAGTAATAATGATAA
TGCCTAATATTTTAAATGGCTGGCCATAAAATGATGACTTACCTTTTAGG
CGGCAGGAACGAAATCCTTAAAACTAGCAAGTATCATTCAATTAGTTTTT
CTCAATGAATAATGAGACGGTTTTATTTTTCAGGTCACAGCACAGTTCAC
CGACCTTTCACGGAAATACAAATTACTCGGATCTGACAGGTATAAATTAA
CGTACTGAGTTACGTTTTAAGTCTACTTTTGCTAGAAAATGAGATTTTAA
TGAAGTAATTGATGACTTCGTGAGATCAGGGGTTGAATTCAGAAGTTTAA
TACCAAAGGTTTTGGCAAATCTAATTTTTAAACGGGTCAAGGAAATGAAA
ATATATGAATGTCATGATATCTTAAATTCTATTCGCAGCTTTTAATCGAT
CACTTTTTCAATTGAGGTGAAGTCTGAGTTATTTTCcaaccgtaagaata
ttttagccGATTTTAccctaggctgcacgcatccactctgaaatgatttg
aaataGTGGATGTGCTACCTATAACATGTATCTTATTCAACCCCCTACCG
GATCTTTGGATAAAGAAGACGAATTCATATAGTCATGTGATAAAATAATA
CTTGATTTCAATCCATTCTAGAATTGTTGTGATCGAGACGAAGGTTGTTT
CCGAAAAcCATTCAAATCTATACATATTAGCTAGCGGTTGAGAATCTGAA
AGAACGCATGCGCACAGGAAAATATTTCGTTCGTTTGATGAATGGAATCT
AGAACTAAAAAGGAGTCGTGTGTTCGAGTAGAAGAAATGTTATCTCGGCC
AAACTGATGTACAACATctagaaagtgttgaaaatagtGGTTTGATTTTA
TTTACAGTTCTTTGGTGGTCTGTTTCATTGGAAGAATGAAATCAAAtaat
caaaaactaaaactttgttAAAAACAAATTACGGAAAAGATTAGAATCTA
AAACGATgagtttaaaattttatattgtGTATAGGTTTGGTAGTAATtag
tattgattttttttaaataagattttttggtataatattcaaaatatttc
aaaaaatggggGTAACGTAACGTAGTACTTTGTACTCACTATTTAAAACT
CTTCTGATATTTGATTAGAGATATCGTTTAATTTTCCACATAAACCCCGC
AAAGGATTTAGTTTATCCTTTTCGAACGGGAAACCTTACAAAATCATCAc
atgaaaaatagcataattttATGTTTGAAATTCTAGGCATAGTTTGtaaa
atagtttattttttcttgcaaaacttgattaatttaaaaatgttattttt
aaaatcttttgttatagctctttttctttgtttatttttttgccgttatt
atttatcttatttttcttgttttttttagaaatgtcTCTTTTGTAACATT
TGTAatcatttatcttttcttttgaaaagtaaCATAGGTTTATAGTAAGC
TAGTAAGCTAAAGAATTGAGCTAGACTTGGACATAAGTTGACTAAGCGTA
TGTAATTGAAAGTATAATATATTTAgctccgggggggggtactataGGTT
TACGAAATGACAGGGGTGccgcccgattttcgaaaattggataTTTTAGG
ACCGTTACCGCGGCTTTTTTCCTAAAATCTAGCCTTTTTAGGGATAAATA
TtggagtttttgtttttttgtaaccCCTAGGGGACATTTTgcgaccttta
gagagacttggagggtccaaaaaaggcacttttaaGGGCGATATACACCC
GtacctccatttgcctaagtaccccctcctcGTTCACGACCGGAGGATCA
CATTATCTAAGCGTCATAATTTTCAGGGATTTGTTGAAGGAAATTAAAAC
CCTTTGGTGAGAATTTATCTAACTTAATATACGTTTCGTCTTAGGTTTTA
cgttttatatcaaaattttcaattttattataCACTTTGTACTGTTGACC
AGTTATTAgaaccaaaaaaatattttgtttgaaa

Coding sequence (CDS) from alignment at scaffold_63:197809..203242+

>TCONS_00071640 ID=TCONS_00071640|Name=TCONS_00071640|organism=Clytia hemisphaerica|type=CDS|length=5808bp|location=Sequence derived from alignment at scaffold_63:197809..203242+ (Clytia hemisphaerica)
ATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAACCACTG
CAAAAGTTNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCTCAGTTC
ACAACCCTTACAACAATCAAATGTATTTATATGTCGGAAGGAAAGATGCT
GTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTCATGATCGTCAG
GgatttcgaAGTGAAATTTCCACCCAGTTTAAATATATTCGAACCAGTTG
TTGTGAAAGGATCGGAGTATCCTGTCCTGTGTGTTGGTGCTTATCAATTg
cCAAATGGGGACATCAAGATCGATCAGCTCGATTTAGAAAATGGCACGCC
ATGGGAGATACGCAAAGATCTAAAGCGTTTGAAGATTAAAACTTTCTCGC
AACTTGAAAAAGATGTGATTTTACTTGCATATGAAAATAAAGTTATGTTT
GTTGACATTGATGGGAAGAAGTTACaagttcaaaacaaattaacTGAGCT
GTCCTTCGATTATCCTGTTGAGGCTGCTGtTTGTTTGCCTGGCAATGTCA
TGACGTTCAATGCAAATGGTATACAGGGGAAAAGCTTGAGCGATAGCCAG
GTCACAGCACAGTTCACCGACCTTTCACGGAAATACAAATTACTCGGATC
TGACAGAATTGTTGTGATCGAGACGAAGGTTGTTTCCGAAAAcCATTCAA
ATCTATACATATTAGCTAGCGGTTGAATGTCGGAAGGAAAGATGCTGTTT
TACTTTTACAATGGTATGAACCACTGCAAAAGTTNAGTGAGTGTTTATTT
ATCATCGATCTTCTCTTTCTCAGTTCACAACCCTTACAACAATCAAATGT
ATTTATATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAA
CCACTGCAAAAGTTCATGATCGTCAGGgatttcgaAGTGAAATTTCCACC
CAGTTTAAATATATTCGAACCAGTTGTTGTGAAAGGATCGGAGTATCCTG
TCCTGTGTGTTGGTGCTTATCAATTgcCAAATGGGGACATCAAGATCGAT
CAGCTCGATTTAGAAAATGGCACGCCATGGGAGATACGCAAAGATCTAAA
GCGTTTGAAGATTAAAACTTTCTCGCAACTTGAAAAAGATGTGATTTTAC
TTGCATATGAAAATAAAGTTATGTTTGTTGACATTGATGGGAAGAAGTTA
CaagttcaaaacaaattaacTGAGCTGTCCTTCGATTATCCTGTTGAGGC
TGCTGtTTGTTTGCCTGGCAATGTCATGACGTTCAATGCAAATGGTATAC
AGGGGAAAAGCTTGAGCGATAGCCAGGTCACAGCACAGTTCACCGACCTT
TCACGGAAATACAAATTACTCGGATCTGACAGAATTGTTGTGATCGAGAC
GAAGGTTGTTTCCGAAAAcCATTCAAATCTATACATATTAGCTAGCGGTT
GAATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAACCAC
TGCAAAAGTTNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCTCAGT
TCACAACCCTTACAACAATCAAATGTATTTATATGTCGGAAGGAAAGATG
CTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTCATGATCGTC
AGGgatttcgaAGTGAAATTTCCACCCAGTTTAAATATATTCGAACCAGT
TGTTGTGAAAGGATCGGAGTATCCTGTCCTGTGTGTTGGTGCTTATCAAT
TgcCAAATGGGGACATCAAGATCGATCAGCTCGATTTAGAAAATGGCACG
CCATGGGAGATACGCAAAGATCTAAAGCGTTTGAAGATTAAAACTTTCTC
GCAACTTGAAAAAGATGTGATTTTACTTGCATATGAAAATAAAGTTATGT
TTGTTGACATTGATGGGAAGAAGTTACaagttcaaaacaaattaacTGAG
CTGTCCTTCGATTATCCTGTTGAGGCTGCTGtTTGTTTGCCTGGCAATGT
CATGACGTTCAATGCAAATGGTATACAGGGGAAAAGCTTGAGCGATAGCC
AGGTCACAGCACAGTTCACCGACCTTTCACGGAAATACAAATTACTCGGA
TCTGACAGAATTGTTGTGATCGAGACGAAGGTTGTTTCCGAAAAcCATTC
AAATCTATACATATTAGCTAGCGGTTGAATGTCGGAAGGAAAGATGCTGT
TTTACTTTTACAATGGTATGAACCACTGCAAAAGTTNAGTGAGTGTTTAT
TTATCATCGATCTTCTCTTTCTCAGTTCACAACCCTTACAACAATCAAAT
GTATTTATATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATG
AACCACTGCAAAAGTTCATGATCGTCAGGgatttcgaAGTGAAATTTCCA
CCCAGTTTAAATATATTCGAACCAGTTGTTGTGAAAGGATCGGAGTATCC
TGTCCTGTGTGTTGGTGCTTATCAATTgcCAAATGGGGACATCAAGATCG
ATCAGCTCGATTTAGAAAATGGCACGCCATGGGAGATACGCAAAGATCTA
AAGCGTTTGAAGATTAAAACTTTCTCGCAACTTGAAAAAGATGTGATTTT
ACTTGCATATGAAAATAAAGTTATGTTTGTTGACATTGATGGGAAGAAGT
TACaagttcaaaacaaattaacTGAGCTGTCCTTCGATTATCCTGTTGAG
GCTGCTGtTTGTTTGCCTGGCAATGTCATGACGTTCAATGCAAATGGTAT
ACAGGGGAAAAGCTTGAGCGATAGCCAGGTCACAGCACAGTTCACCGACC
TTTCACGGAAATACAAATTACTCGGATCTGACAGAATTGTTGTGATCGAG
ACGAAGGTTGTTTCCGAAAAcCATTCAAATCTATACATATTAGCTAGCGG
TTGAATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAACC
ACTGCAAAAGTTNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCTCA
GTTCACAACCCTTACAACAATCAAATGTATTTATATGTCGGAAGGAAAGA
TGCTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTCATGATCG
TCAGGgatttcgaAGTGAAATTTCCACCCAGTTTAAATATATTCGAACCA
GTTGTTGTGAAAGGATCGGAGTATCCTGTCCTGTGTGTTGGTGCTTATCA
ATTgcCAAATGGGGACATCAAGATCGATCAGCTCGATTTAGAAAATGGCA
CGCCATGGGAGATACGCAAAGATCTAAAGCGTTTGAAGATTAAAACTTTC
TCGCAACTTGAAAAAGATGTGATTTTACTTGCATATGAAAATAAAGTTAT
GTTTGTTGACATTGATGGGAAGAAGTTACaagttcaaaacaaattaacTG
AGCTGTCCTTCGATTATCCTGTTGAGGCTGCTGtTTGTTTGCCTGGCAAT
GTCATGACGTTCAATGCAAATGGTATACAGGGGAAAAGCTTGAGCGATAG
CCAGGTCACAGCACAGTTCACCGACCTTTCACGGAAATACAAATTACTCG
GATCTGACAGAATTGTTGTGATCGAGACGAAGGTTGTTTCCGAAAAcCAT
TCAAATCTATACATATTAGCTAGCGGTTGAATGTCGGAAGGAAAGATGCT
GTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTNAGTGAGTGTTT
ATTTATCATCGATCTTCTCTTTCTCAGTTCACAACCCTTACAACAATCAA
ATGTATTTATATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTA
TGAACCACTGCAAAAGTTCATGATCGTCAGGgatttcgaAGTGAAATTTC
CACCCAGTTTAAATATATTCGAACCAGTTGTTGTGAAAGGATCGGAGTAT
CCTGTCCTGTGTGTTGGTGCTTATCAATTgcCAAATGGGGACATCAAGAT
CGATCAGCTCGATTTAGAAAATGGCACGCCATGGGAGATACGCAAAGATC
TAAAGCGTTTGAAGATTAAAACTTTCTCGCAACTTGAAAAAGATGTGATT
TTACTTGCATATGAAAATAAAGTTATGTTTGTTGACATTGATGGGAAGAA
GTTACaagttcaaaacaaattaacTGAGCTGTCCTTCGATTATCCTGTTG
AGGCTGCTGtTTGTTTGCCTGGCAATGTCATGACGTTCAATGCAAATGGT
ATACAGGGGAAAAGCTTGAGCGATAGCCAGGTCACAGCACAGTTCACCGA
CCTTTCACGGAAATACAAATTACTCGGATCTGACAGAATTGTTGTGATCG
AGACGAAGGTTGTTTCCGAAAAcCATTCAAATCTATACATATTAGCTAGC
GGTTGAATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGGTATGAA
CCACTGCAAAAGTTNAGTGAGTGTTTATTTATCATCGATCTTCTCTTTCT
CAGTTCACAACCCTTACAACAATCAAATGTATTTATATGTCGGAAGGAAA
GATGCTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTCATGAT
CGTCAGGgatttcgaAGTGAAATTTCCACCCAGTTTAAATATATTCGAAC
CAGTTGTTGTGAAAGGATCGGAGTATCCTGTCCTGTGTGTTGGTGCTTAT
CAATTgcCAAATGGGGACATCAAGATCGATCAGCTCGATTTAGAAAATGG
CACGCCATGGGAGATACGCAAAGATCTAAAGCGTTTGAAGATTAAAACTT
TCTCGCAACTTGAAAAAGATGTGATTTTACTTGCATATGAAAATAAAGTT
ATGTTTGTTGACATTGATGGGAAGAAGTTACaagttcaaaacaaattaac
TGAGCTGTCCTTCGATTATCCTGTTGAGGCTGCTGtTTGTTTGCCTGGCA
ATGTCATGACGTTCAATGCAAATGGTATACAGGGGAAAAGCTTGAGCGAT
AGCCAGGTCACAGCACAGTTCACCGACCTTTCACGGAAATACAAATTACT
CGGATCTGACAGAATTGTTGTGATCGAGACGAAGGTTGTTTCCGAAAAcC
ATTCAAATCTATACATATTAGCTAGCGGTTGAATGTCGGAAGGAAAGATG
CTGTTTTACTTTTACAATGGTATGAACCACTGCAAAAGTTNAGTGAGTGT
TTATTTATCATCGATCTTCTCTTTCTCAGTTCACAACCCTTACAACAATC
AAATGTATTTATATGTCGGAAGGAAAGATGCTGTTTTACTTTTACAATGG
TATGAACCACTGCAAAAGTTCATGATCGTCAGGgatttcgaAGTGAAATT
TCCACCCAGTTTAAATATATTCGAACCAGTTGTTGTGAAAGGATCGGAGT
ATCCTGTCCTGTGTGTTGGTGCTTATCAATTgcCAAATGGGGACATCAAG
ATCGATCAGCTCGATTTAGAAAATGGCACGCCATGGGAGATACGCAAAGA
TCTAAAGCGTTTGAAGATTAAAACTTTCTCGCAACTTGAAAAAGATGTGA
TTTTACTTGCATATGAAAATAAAGTTATGTTTGTTGACATTGATGGGAAG
AAGTTACaagttcaaaacaaattaacTGAGCTGTCCTTCGATTATCCTGT
TGAGGCTGCTGtTTGTTTGCCTGGCAATGTCATGACGTTCAATGCAAATG
GTATACAGGGGAAAAGCTTGAGCGATAGCCAGGTCACAGCACAGTTCACC
GACCTTTCACGGAAATACAAATTACTCGGATCTGACAGAATTGTTGTGAT
CGAGACGAAGGTTGTTTCCGAAAAcCATTCAAATCTATACATATTAGCTA
GCGGTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044514	XLOC_044514	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00071640-protein	TCONS_00071640-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:197809..203242 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89373	2.95142	3.62748	3.79424	14.6338	10.7929	16.5138	17.8945	9.61711	11.8507	11.6222	5.67347	8.93532	7.46432	8.90323	10.1213	12.1029	13.382	9.11844	11.5454	11.7908	10.632	9.20885	10.9885	12.5067	13.6235	28.2813	23.2473	17.5503	15.794

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001180	CNH_dom

Blast

[Close]

BLAST of TCONS_00071640 vs. Swiss-Prot (Human)
Match: M4K5 (Mitogen-activated protein kinase kinase kinase kinase 5 OS=Homo sapiens GN=MAP4K5 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 7.877e-40
Identity = 82/214 (38.32%), Postives = 133/214 (62.15%), Query Frame = 3

Query:  690 VHNPYNNQMYLYVGRKDAVLLLQWYEPLQKFMIVRDFEVKFPPSLNIFEPVVVKGSEYPVLCVGAYQLPNGD--IKIDQLDLENGTPW--EIRKDLKRLKIKTFSQLEKDVILLAYENKVMFVDIDGKKLQVQNKLTELSFDYPVEAAVCLPGNVMTFNANGIQGKSLSDSQVTAQFTDLSRKYKLLGSDRIVVIETKVVSEN---HSNLYILA 1310
            V NPY    YL    +  ++LLQWYEP+QKFM+++ F+   P  LN+FE +V+   EYP++CV   +    +  ++ + ++L + + W  EI    ++L     +QLE+D +L+  +  V  V++ GK    +   +ELSFD+ +E+ VCL  +V+ F  +G+QGKS    +VT + +D +R ++LLGSDR+VV+E++  +EN   HSNLYILA
Sbjct:  628 VRNPYTGHKYLCGALQSGIVLLQWYEPMQKFMLIKHFDFPLPSPLNVFEMLVIPEQEYPMVCVAISKGTESNQVVQFETINLNSASSWFTEIGAGSQQLDSIHVTQLERDTVLVCLDKFVKIVNLQGKLKSSKKLASELSFDFRIESVVCLQDSVLAFWKHGMQGKSFKSDEVTQEISDETRVFRLLGSDRVVVLESR-PTENPTAHSNLYILA 840

The following BLAST results are available for this feature:

BLAST of TCONS_00071640 vs. Swiss-Prot (Human)

BLAST of TCONS_00071640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
M4K5	7.877e-40	38.32	Mitogen-activated protein kinase kinase kinase kin...	[more]

You are here

TCONS_00071640 (transcript) - C. hemisphaerica