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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071737 ID=TCONS_00071737|Name=TCONS_00071737|organism=Clytia hemisphaerica|type=transcript|length=2217bp
aacaatcccacaatgcatcgcttatttagaaaaataaaaaactccgataa
ggtttATTATCAGGGTGTCtcgaaaaaatgtaaataaagagTTATGGCGA
AATCATAGCTTATAACAGTCATAAAGAGATGATTAAATTATAGAAAGTGG
TATAAAGTTGAAGTTTTCATGTCTATTATAACAAAGAGCATAGCAGGGAA
TCATTTTTATAACATGTGGACAATCTTTTTAAAGTATTATACTATGGACT
TTTGATATTGATATTATTTGCGTAGCCTGTGTGTGAGTTGCCTGAAGCTT
GAAAGTTTTAACATTGAATCGTCAAGAGAGAAGACCCCGTCGGGAGAAGA
CATTTCAAAACGAAAGTCGTGGCAACAAATATACACTCTGAATCCAAAAT
AGTGAAACAGACTTTATAATCATGGCAGACAATCTTGAAGAAATCTATAT
TAAACCTGTTGCCCACCGAGACAACAAGCGAACATTGTCGGCAACCGAAT
CTGTTTATCACCACAGTGCGTTATTGAATCCACCACAGTCTTTTGCAATC
TTTGTTGTCATTTTGGAATCTTCGAATCCTATTCCTCCAGATATGGTTAG
GAAGAGCTTGAACGAGGAATCCAAGAAACATATGTTGTTACGTTCCCGAA
TAAGAACCAATACGGATGGATATGATGAATTCCAGGAGATTGAAGATTTA
GATATGGAAACAGGTCATTGGATTGATTTAGAATGTCAAACAAATGATAA
TATACAGGATTGGAATGTAGCGTTGAGAGATAATATCAAGAATAAGCCAT
TTGATTTTGCTGAAGGCCCTGTATGGAGAGCTCTCTGGATTGAATCAAAT
CTTACGGAAAATACTGATGATGTTGATGGGACGTATTCATACACCCTTGT
TTTTATAAGTAGTCATGCTATACTGGATGGTTTGTCCATATCTGATTTCG
CATTTGCTCAATTCCTACCTACTCTAAACAATCTGCTGAATGGGGATGAA
CTAAGCATTAAGTCAattgaccaatcagattcgatACAGCTTACGAAATC
GACCACTGAGATTTATTCGAATCTAAAGGCACCGCAAGAATCATATCAAC
AATATCCAGTaccatttttgaaagaaaaagctcTTGGTGTTGGAATCTCC
TTGATCTCAATGTTGAATCTGAAACCTAAACCTCCACCAATGAGGgtctt
tgaaaacaaaaataacaacgGTTGTACAGAGTTTCATCAATTTGAGATCG
ATGAAGAAACAGCATTTAATTTTCGCCGTGTTTGTAAAGAAAATTCACTA
TCCTTCCAAGCTATGTTGATGCTGTTGATTGGTAATGCTATGAAAGAATG
CGAGAATCATTTTCCGCACTTTAAGGCTAATATACACGAGATACGATATC
CAGTCGACGTTCGTCGCTTCAATAAGGCCCTGTCTACATCACCGTTACCG
GTAGCAGTTCACGTTCAATCTGTGGCGCAGAAAATTCGACCACAACCAAC
AGAGAATGTAGCAGAGTTTCTCAAATATGCTCACGAAGTATCAGAAAGTG
TTCGTAGTTTTAAGGGACCAGCTCCAGCCAGTGATCTGATTGACTCTGTA
GTGATTCTTCAAAGAAACAATTTCTTCCAGAAAGGAATTCAGTATGCACC
TCAAGGGATCCTTTTTAGCAATATTGGCAATTGCGATGGTTTCCAGAAAC
TACAGTCAACAGATATAGTAAAGGCTAAGCAATGCTATGCTACTAGTTTA
ACACATAATACAATTTTCGCAAGTGCTGCTGCCCTCaacaagaaaatgtt
ttgtGTTTTATCTTATAACAGTGAATGGTTAAACGCAGACTTTGCAAAAG
TTGTGGAGAAAAATATGAGATCTTCAATGAAGACATTAGTGAAAGGCTTA
TCTGTTATGGCAACTAAAGGGCGTGGCATATTAAAGGTTTTTGACTTTTG
AGCTTATAAAAAGACAAATATaccaattatttttttataacaatataATG
ACcgtttcaaaaatgatttttttgagaataaataaaataatgaaaatact
aaaaattgcatggtttaaaaaattctagaaaatattaaaaatttgaaaga
tatcacaactttaaaaagtattatattaaaaatattagaaatctGGAAAA
TATTAATTAGTTGTATGGATAAAAGTTGTGAGCTTGAAAGTCATACTTTT
TCATACTCAAGCCCTTC Run BLAST on NCBI protein sequence of TCONS_00071737-protein >TCONS_00071737-protein ID=TCONS_00071737-protein|Name=TCONS_00071737-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MADNLEEIYIKPVAHRDNKRTLSATESVYHHSALLNPPQSFAIFVVILES
SNPIPPDMVRKSLNEESKKHMLLRSRIRTNTDGYDEFQEIEDLDMETGHW
IDLECQTNDNIQDWNVALRDNIKNKPFDFAEGPVWRALWIESNLTENTDD
VDGTYSYTLVFISSHAILDGLSISDFAFAQFLPTLNNLLNGDELSIKSID
QSDSIQLTKSTTEIYSNLKAPQESYQQYPVPFLKEKALGVGISLISMLNL
KPKPPPMRVFENKNNNGCTEFHQFEIDEETAFNFRRVCKENSLSFQAMLM
LLIGNAMKECENHFPHFKANIHEIRYPVDVRRFNKALSTSPLPVAVHVQS
VAQKIRPQPTENVAEFLKYAHEVSESVRSFKGPAPASDLIDSVVILQRNN
FFQKGIQYAPQGILFSNIGNCDGFQKLQSTDIVKAKQCYATSLTHNTIFA
SAAALNKKMFCVLSYNSEWLNADFAKVVEKNMRSSMKTLVKGLSVMATKG
RGILKVFDF Run BLAST on NCBI transcript from alignment at scaffold_63:373268..376186- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071737 ID=TCONS_00071737|Name=TCONS_00071737|organism=Clytia hemisphaerica|type=transcript|length=2919bp|location=Sequence derived from alignment at scaffold_63:373268..376186- (Clytia hemisphaerica)
AACAATCCCACAATGCATCGCTTATTTAGAAAAATAAAAAACTCCGATAA
GGTTTATTATCAGGGTGTCTCGAAAAAATGTAAATAAAGAGTTATGGCGA
AATCATAGCTTATAACAGTCATAAAGAGATGATTAAATTATAGAAAGTGG
TATAAAGTTGAAGTTTTCATGTCTATTATAACAAAGAGCATAGCAGGGAA
TCATTTTTATAACATGTGGACAATCTTTTTAAAGTATTATACTATGGACT
TTTGATATTGATATTATTTGCGTAGCCTGTGTGTGAGTTGCCTGAAGCTT
GAAAGTTTTAACATTGAATCGTCAAGAGAGAAGACCCCGTCGGGAGAAGA
CATTTCAAAACGAAAGTCGTGGCAACAAATATACACTCTGAATCCAAAAT
AGTGAAACAGACTTTATAATCATGGCAGACAATCTTGAAGAAATCTATAT
TAAACCTGTTGCCCACCGAGACAACAAGCGAACATTGTCGGCAACCGAAT
CTGTTTATCACCACAGTGCGTTATTGAATCCACCACAGTCTTTTGCAATC
TTTGTTGTCATTTTGGAATCTTCGAATCCTATTCCTCCAGATATGGTTAG
GAAGAGCTTGAACGAGGAATCCAAGAAACATATGTTGTTACGTTCCCGAA
TAAGAACCAATACGGATGGATATGATGAATTCCAGGAGATTGAAGATTTA
GATATGGAAACAGGTCATTGGATTGATTTAGAATGTCAAACAAATGATAA
TATACAGGATTGGAATGTAGCGTTGAGAGATAATATCAAGAATAAGCCAT
TTGATTTTGCTGAAGGCCCTGTATGGAGAGCTCTCTGGATTGAATCAAAT
CTTACGGAAAATACTGATGATGTTGATGGGACGTATTCATACACCCTTGT
TTTTATAAGTATGTCATATTAACGTATTAACTGGAATAGCTTTTTGACTT
TCAAGGGGGTTGGACCATATTCCATACTGTTAGGAATCAAAGGAGTCACG
TACTTTTGTTTAAAAACACCCCTGTGTCACAGACCCGTTTGGAACCCAGC
CCCATACTGGATTTCGTCCCCGGTGGGAAAAAACCCTGTAATTTCAGCCC
CACTGGGATATTGATTTTGATCTTATTCCCTTTAGACATTCAAAGTTTAA
AAATTGCACTCCAAAACCATCCCCACTGGATTTGCTAACCTTGGAACAAT
GGAATTTCTATCCCCATTGGGATTTCGATAGGAGTTTTTATCCCCATCGA
GGAAAAATGTTCCAGCGGGGCTGTGAGACAGGGTTGTTTGAAAATTCATG
GTTGTCTAAAATGTATTAACAGAAAGACTATTAACACCAAACCAACCAAA
ATGTATGTACTGTCATTTGTTCGACAAAGGAAAATGTTTTGAATGAGATG
AGATATATTGAGTAAATTTAGGAAAGTCCAAAACCTTTTGTCCAAAAGAA
AATACTATTTGTTCTAAATGATAAAAACACCTTAAAAGTATAAATTTTCA
CCAATTTTTTTAATAGATTTGAAAATTTAGTTTTACACTACCTTTAAGGA
AGGGGAAAGGAAAAGATTGTTCCAGTGTTCATAGATCTCAAAAACTTTTT
TCATTGACAGGTAGTCATGCTATACTGGATGGTTTGTCCATATCTGATTT
CGCATTTGCTCAATTCCTACCTACTCTAAACAATCTGCTGAATGGGGATG
AACTAAGCATTAAGTCAATTGACCAATCAGATTCGATACAGCTTACGAAA
TCGACCACTGAGATTTATTCGAATCTAAAGGCACCGCAAGAATCATATCA
ACAATATCCAGTACCATTTTTGAAAGAAAAAGCTCTTGGTGTTGGAATCT
CCTTGATCTCAATGTTGAATCTGAAACCTAAACCTCCACCAATGAGGGTC
TTTGAAAACAAAAATAACAACGGTTGTACAGAGTTTCATCAATTTGAGAT
CGATGAAGAAACAGCATTTAATTTTCGCCGTGTTTGTAAAGAAAATTCAC
TATCCTTCCAAGCTATGTTGATGCTGTTGATTGGTAATGCTATGAAAGAA
TGCGAGAATCATTTTCCGCACTTTAAGGCTAATATACACGAGATACGATA
TCCAGTCGACGTTCGTCGCTTCAATAAGGCCCTGTCTACATCACCGTTAC
CGGTAGCAGTTCACGTTCAATCTGTGGCGCAGAAAATTCGACCACAACCA
ACAGAGAATGTAGCAGAGTTTCTCAAATATGCTCACGAAGTATCAGAAAG
TGTTCGTAGTTTTAAGGGACCAGCTCCAGCCAGTGATCTGATTGACTCTG
TAGTGATTCTTCAAAGAAACAATTTCTTCCAGAAAGGAATTCAGTATGCA
CCTCAAGGGATCCTTTTTAGCAATATTGGCAATTGCGATGGTTTCCAGAA
ACTACAGTCAACAGATATAGTAAAGGCTAAGCAATGCTATGCTACTAGTT
TAACACATAATACAATTTTCGCAAGTGCTGCTGCCCTCAACAAGAAAATG
TTTTGTGTTTTATCTTATAACAGTGAATGGTTAAACGCAGACTTTGCAAA
AGTTGTGGAGAAAAATATGAGATCTTCAATGAAGACATTAGTGAAAGGCT
TATCTGTTATGGCAACTAAAGGGCGTGGCATATTAAAGGTTTTTGACTTT
TGAGCTTATAAAAAGACAAATATACCAATTATTTTTTTATAACAATATAA
TGACCGTTTCAAAAATGATTTTTTTGAGAATAAATAAAATAATGAAAATA
CTAAAAATTGCATGGTTTAAAAAATTCTAGAAAATATTAAAAATTTGAAA
GATATCACAACTTTAAAAAGTATTATATTAAAAATATTAGAAATCTGGAA
AATATTAATTAGTTGTATGGATAAAAGTTGTGAGCTTGAAAGTCATACTT
TTTCATACTCAAGCCCTTC Coding sequence (CDS) from alignment at scaffold_63:373268..376186- >TCONS_00071737 ID=TCONS_00071737|Name=TCONS_00071737|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at scaffold_63:373268..376186- (Clytia hemisphaerica)
GTAGTCATGCTATACTGGATGGTTTGTCCATATCTGATTTCGCATTTGCT
CAATTCCTACCTACTCTAAACAATCTGCTGAATGGGGATGAACTAAGCAT
TAAGTCAATTGACCAATCAGATTCGATACAGCTTACGAAATCGACCACTG
AGATTTATTCGAATCTAAAGGCACCGCAAGAATCATATCAACAATATCCA
GTACCATTTTTGAAAGAAAAAGCTCTTGGTGTTGGAATCTCCTTGATCTC
AATGTTGAATCTGAAACCTAAACCTCCACCAATGAGGGTCTTTGAAAACA
AAAATAACAACGGTTGTACAGAGTTTCATCAATTTGAGATCGATGAAGAA
ACAGCATTTAATTTTCGCCGTGTTTGTAAAGAAAATTCACTATCCTTCCA
AGCTATGTTGATGCTGTTGATTGGTAATGCTATGAAAGAATGCGAGAATC
ATTTTCCGCACTTTAAGGCTAATATACACGAGATACGATATCCAGTCGAC
GTTCGTCGCTTCAATAAGGCCCTGTCTACATCACCGTTACCGGTAGCAGT
TCACGTTCAATCTGTGGCGCAGAAAATTCGACCACAACCAACAGAGAATG
TAGCAGAGTTTCTCAAATATGCTCACGAAGTATCAGAAAGTGTTCGTAGT
TTTAAGGGACCAGCTCCAGCCAGTGATCTGATTGACTCTGTAGTGATTCT
TCAAAGAAACAATTTCTTCCAGAAAGGAATTCAGTATGCACCTCAAGGGA
TCCTTTTTAGCAATATTGGCAATTGCGATGGTTTCCAGAAACTACAGTCA
ACAGATATAGTAAAGGCTAAGCAATGCTATGCTACTAGTTTAACACATAA
TACAATTTTCGCAAGTGCTGCTGCCCTCAACAAGAAAATGTTTTGTGTTT
TATCTTATAACAGTGAATGGTTAAACGCAGACTTTGCAAAAGTTGTGGAG
AAAAATATGAGATCTTCAATGAAGACATTAGTGAAAGGCTTATCTGTTAT
GGCAACTAAAGGGCGTGGCATATTAAAGGTTTTTGACTTTTGAATGGCAG
ACAATCTTGAAGAAATCTATATTAAACCTGTTGCCCACCGAGACAACAAG
CGAACATTGTCGGCAACCGAATCTGTTTATCACCACAGTGCGTTATTGAA
TCCACCACAGTCTTTTGCAATCTTTGTTGTCATTTTGGAATCTTCGAATC
CTATTCCTCCAGATATGGTTAGGAAGAGCTTGAACGAGGAATCCAAGAAA
CATATGTTGTTACGTTCCCGAATAAGAACCAATACGGATGGATATGATGA
ATTCCAGGAGATTGAAGATTTAGATATGGAAACAGGTCATTGGATTGATT
TAGAATGTCAAACAAATGATAATATACAGGATTGGAATGTAGCGTTGAGA
GATAATATCAAGAATAAGCCATTTGATTTTGCTGAAGGCCCTGTATGGAG
AGCTCTCTGGATTGAATCAAATCTTACGGAAAATACTGATGATGTTGATG
GGACGTATTCATACACCCTTGTTTTTATAAGTAGTCATGCTATACTGGAT
GGTTTGTCCATATCTGATTTCGCATTTGCTCAATTCCTACCTACTCTAAA
CAATCTGCTGAATGGGGATGAACTAAGCATTAAGTCAATTGACCAATCAG
ATTCGATACAGCTTACGAAATCGACCACTGAGATTTATTCGAATCTAAAG
GCACCGCAAGAATCATATCAACAATATCCAGTACCATTTTTGAAAGAAAA
AGCTCTTGGTGTTGGAATCTCCTTGATCTCAATGTTGAATCTGAAACCTA
AACCTCCACCAATGAGGGTCTTTGAAAACAAAAATAACAACGGTTGTACA
GAGTTTCATCAATTTGAGATCGATGAAGAAACAGCATTTAATTTTCGCCG
TGTTTGTAAAGAAAATTCACTATCCTTCCAAGCTATGTTGATGCTGTTGA
TTGGTAATGCTATGAAAGAATGCGAGAATCATTTTCCGCACTTTAAGGCT
AATATACACGAGATACGATATCCAGTCGACGTTCGTCGCTTCAATAAGGC
CCTGTCTACATCACCGTTACCGGTAGCAGTTCACGTTCAATCTGTGGCGC
AGAAAATTCGACCACAACCAACAGAGAATGTAGCAGAGTTTCTCAAATAT
GCTCACGAAGTATCAGAAAGTGTTCGTAGTTTTAAGGGACCAGCTCCAGC
CAGTGATCTGATTGACTCTGTAGTGATTCTTCAAAGAAACAATTTCTTCC
AGAAAGGAATTCAGTATGCACCTCAAGGGATCCTTTTTAGCAATATTGGC
AATTGCGATGGTTTCCAGAAACTACAGTCAACAGATATAGTAAAGGCTAA
GCAATGCTATGCTACTAGTTTAACACATAATACAATTTTCGCAAGTGCTG
CTGCCCTCAACAAGAAAATGTTTTGTGTTTTATCTTATAACAGTGAATGG
TTAAACGCAGACTTTGCAAAAGTTGTGGAGAAAAATATGAGATCTTCAAT
GAAGACATTAGTGAAAGGCTTATCTGTTATGGCAACTAAAGGGCGTGGCA
TATTAAAGGTTTTTGACTTTTGAATGGCAGACAATCTTGAAGAAATCTAT
ATTAAACCTGTTGCCCACCGAGACAACAAGCGAACATTGTCGGCAACCGA
ATCTGTTTATCACCACAGTGCGTTATTGAATCCACCACAGTCTTTTGCAA
TCTTTGTTGTCATTTTGGAATCTTCGAATCCTATTCCTCCAGATATGGTT
AGGAAGAGCTTGAACGAGGAATCCAAGAAACATATGTTGTTACGTTCCCG
AATAAGAACCAATACGGATGGATATGATGAATTCCAGGAGATTGAAGATT
TAGATATGGAAACAGGTCATTGGATTGATTTAGAATGTCAAACAAATGAT
AATATACAGGATTGGAATGTAGCGTTGAGAGATAATATCAAGAATAAGCC
ATTTGATTTTGCTGAAGGCCCTGTATGGAGAGCTCTCTGGATTGAATCAA
ATCTTACGGAAAATACTGATGATGTTGATGGGACGTATTCATACACCCTT
GTTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071737-exon-scaffold_63-1575043694:375279..376186 | TCONS_00071737-exon-scaffold_63-1575043694:375279..376186 | Clytia hemisphaerica | exon |
| TCONS_00071737-exon-scaffold_63-1575043694:373268..374576 | TCONS_00071737-exon-scaffold_63-1575043694:373268..374576 | Clytia hemisphaerica | exon |
| TCONS_00071737-exon-scaffold_63-1510915933:375279..376186 | TCONS_00071737-exon-scaffold_63-1510915933:375279..376186 | Clytia hemisphaerica | exon |
| TCONS_00071737-exon-scaffold_63-1510915933:373268..374576 | TCONS_00071737-exon-scaffold_63-1510915933:373268..374576 | Clytia hemisphaerica | exon |
| TCONS_00071737-exon-scaffold_63-1491911889:375279..376186 | TCONS_00071737-exon-scaffold_63-1491911889:375279..376186 | Clytia hemisphaerica | exon |
| TCONS_00071737-exon-scaffold_63-1491911889:373268..374576 | TCONS_00071737-exon-scaffold_63-1491911889:373268..374576 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:373268..376186 - |
Blast
The following BLAST results are available for this feature:
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