TCONS_00071898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071898
Unique NameTCONS_00071898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071898 ID=TCONS_00071898|Name=TCONS_00071898|organism=Clytia hemisphaerica|type=transcript|length=636bp
ACGAAAATTGCGATTTCAGTACTTTATTTTAttggatattttgattttgg
aggGGCTTAATGGCTTCTAGGCCATAATTCAAACCTTATTGGaagatttt
tgagtttttggatcctgagatcctaaggttctTATGTTAAAACCCTTCAT
TTTCCACAGGTAACTTAATGCACTAAATGtggtatttaatttttttggaa
gagTCATCCCCTGTTTATCAAGTACATAATCAACATTTGATTGTAGATTC
GCTTTGCTTGAATGGGATTAACTCGCTGAATATGCTAAACAACTTTTATA
AATCAGATAAAGTTAAGCCAGCAAATAATTTCATCTTATATTGACTATAC
ACCAGGACTATTATAAGACATCCATGGATATACATTGCAGCTCAACAAAT
AACCAGAAGAGTCGGTCTAAGAGGATGATTCAAGGCTAGTGGTCAACTTT
CATACTACAAGAGAGTAGATGAGAATATAGACTGCCTTTCAAAGCGTTTC
TTGAGCTCACTTAGCTACCATTGTTAAGACCAAGTTTCAATAagcatacc
ttaagggaactttatTTAACttaaagggaactaattttcgcttttttcac
ggtttttcggcaaaaataagaaaccatgaattacaa
Run BLAST on NCBI

transcript from alignment at scaffold_64:136347..136982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071898 ID=TCONS_00071898|Name=TCONS_00071898|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at scaffold_64:136347..136982 (Clytia hemisphaerica)
ttgtaattcatggtttcttatttttgccgaaaaaccgtgaaaaaagcgaa
aattagttccctttaaGTTAAataaagttcccttaaggtatgctTATTGA
AACTTGGTCTTAACAATGGTAGCTAAGTGAGCTCAAGAAACGCTTTGAAA
GGCAGTCTATATTCTCATCTACTCTCTTGTAGTATGAAAGTTGACCACTA
GCCTTGAATCATCCTCTTAGACCGACTCTTCTGGTTATTTGTTGAGCTGC
AATGTATATCCATGGATGTCTTATAATAGTCCTGGTGTATAGTCAATATA
AGATGAAATTATTTGCTGGCTTAACTTTATCTGATTTATAAAAGTTGTTT
AGCATATTCAGCGAGTTAATCCCATTCAAGCAAAGCGAATCTACAATCAA
ATGTTGATTATGTACTTGATAAACAGGGGATGActcttccaaaaaaatta
aataccaCATTTAGTGCATTAAGTTACCTGTGGAAAATGAAGGGTTTTAA
CATAagaaccttaggatctcaggatccaaaaactcaaaaatcttCCAATA
AGGTTTGAATTATGGCCTAGAAGCCATTAAGCCcctccaaaatcaaaata
tccaaTAAAATAAAGTACTGAAATCGCAATTTTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044636XLOC_044636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071898-exon-scaffold_64-1491911889:136347..136982TCONS_00071898-exon-scaffold_64-1491911889:136347..136982Clytia hemisphaericaexon
TCONS_00071898-exon-scaffold_64-1510915933:136347..136982TCONS_00071898-exon-scaffold_64-1510915933:136347..136982Clytia hemisphaericaexon
TCONS_00071898-exon-scaffold_64-1575043694:136347..136982TCONS_00071898-exon-scaffold_64-1575043694:136347..136982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:136347..136982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.10682	0.100004	0.070015	0.17345	0	0.0553348	0.27629	0.631245	0	0.101261	0.436607	0.447508	0.706578	0.646961	0.883655	0.940399	0.381059	0.433048	0	0.39807	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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