TCONS_00071984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071984
Unique NameTCONS_00071984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3545

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071984 ID=TCONS_00071984|Name=TCONS_00071984|organism=Clytia hemisphaerica|type=transcript|length=3545bp
ctttttgacgaaGATTGGGCGAACATTTCCTCTTTTAGCTATACAGGTAT
AAACACGAAGATTAAGGGAAAAGAAATTAGACTAGTGTATTCGAACCAAT
CAGGTTTTGTGTCTTCGCTAGCTATTTACATCAGTGCTTTTGTCTCAATA
ATTTGATCTACCAGGGACCAAATGCTTCGTACCCTAGAATTAACTTCACT
TTCTGAGAgtttgaaatttattgaatgaataaagaaaacatttttatttt
aaaacataGTTTGAAATGTTAAGCTGGATGATTTCGATTCATATCATGGC
ATATTCTCATACACTGTGTTCCACTTTTTCAAGACAATCTGTAAATTCTA
TCGGAATGAGGGACGCAAAAggtgcatttaaaaaaattattattttcaga
TTTGAATATAATTTACTGACAATccaaaaaaatgatgattttgtcTAGTG
GAAAAACGATGCTGTAGCTTCTGCACTGAAGTTTGATAGCTGTCATGCAA
TACCCcttaattttattcatttatttattttcaggactcaaaataaacaa
caaaacaaaaaaacaacaacaaactaaTACAATCATGAATACAATGATAA
TTCTTACCATTGCTACAATCTTCGTGACCAAAACATTTGGTTGTGAGCTA
ACTCTTGGACAGGATTCTGCATTATGCCAAGCAATAGAAGCTGATGTTAC
CAAGGTATCCGCCCAAGGTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTG
ATGCTGACAAAGCCAAAGATGCCTGCGATGAACTACAAACACAAAAAAGT
TCAGGAGAATATAAATTTGAACCAGTTTGTGAAAAGATCAAATTGGTCCT
CCCTGATCTTATTAAGGCTGCACTTGATTGCAACGATCAAGACGCACTCA
AGAATTCTTACGCCAAAGTTGCTCAATGTAATGCTGAAAATGCTGCATCA
TCTTCTTCAAATACAATGATGGTGATGGAAGCGTCTACAACTCAGATGCT
TGATGCTTCATCAATGATGATCAAAGCCTCTTCATCAGCAAATGAAATGC
CAGCAATGTCAACATCCATGGATAATGCAATGATGTCATCAGCAATGGTT
GAAAATATGAATTCAACAATGACAGATATGATGGCTTCAACCAGTAAAAT
GGAAATTTCAGCTTCGAGCTCAATGGCCATGAATGGAACTAGTTCATCAG
TTGTTCCAGGTGCTGCAAATTCAATCACATTCACACATTCTGTATTGGTG
ATCACAGCTCTGGTAGCAATGTTGGCTTCATTGATGTAAATATATGATTA
AAAAACACTCTTATTCAGTGATCGATTCTTCTCTTAAATAATCTTTCAAC
gaattaaaagaacaaattttcgGACAATATTGGCCATTTAAATATGTTGT
AGATTCTAGATAAAAAACGCCATAAGATTGTAATAAAGACACAGACTCAG
AATATTATTGCTGTGCAAGGGCAACAGAGAAGTTTCAATTGGAGAAAATC
TCTGGAAttaattttatctttttagaagacaaagttatttttaaatattt
acatcataaattttgaaactttacaCAGAAAAATTATTGTAGacgtattt
tatattttaattttgaataaaaacaaaattttctttgatcttaCAATTTT
GTTATATGCTTGTGTATTTACTATAGTTTATAAAGTCCCAATTTTTATGA
TAGTCAATATTGCTACGAAGCAATAAAAGCAGTAAAAGCAGTAAAACCAT
TGGATTTCTATTAACtatggataaaatgaaaggTGGAATATATAATctct
cttttttaatgatttagaCAACCCGTGTCATACAGACCCGGGTGGACCCA
ACAGAAAATTTACCCAAGATTCTCATTCAGGCATttaattttagccccac
tgagagattcccattgggatttcgatagaaacaTCCCCACTCTGAGAACA
AGTTCCAACACGCGGATTTAAGACAGGGTTTCAAAAGTCTATAGTGAAAA
AAGCTATTTAGATTTTCATGGTTATAATATTTGAGAGCTTAcgaatattt
ctttaaaaacgCCTTCTTTGTATATTTGCATGATTGATTTGACAAATATT
TCAATGATACACTCCTGTCTGACAACCCTGGTATAATTTTTCATACAGCG
gggataaattttttctttctggaAATCACAATGGaggtagaaattctatt
gttctcagctTTAAAAACCCAGTGCGGGGATGATTTTGGAGCAAAAAGTT
ATACCCTTCATGGCTacacattgaatttcgaatgggggtgaaatcaaagt
caatttcttatTGAGGGTTAAAACTTCCAGAGGCGCGCGGGTGCAGCAGG
CGTTTAATAATCGTACTAGAACATTTCTCCGGTTTAAAAAAGACAGAAAG
GGGTAGGAATATAGCACAGCTTCTTATCAAGTGTCCCTTTCTACCCAGCt
gacacaacgtcgtttcagcgttcatctaacattaaatggacgttgtgtgt
gccagctgggaacctTTGATAAGCACCAGTTAGAGTCGTTATGTAAAACT
GATTTGAAATATACAGTCGACGCtctttaatttgattttcaagggcAATT
TGATTTTCATCCAACAAGGAAGCGTAAGAACAAGTAAAGTATTGTCTATA
AGAGTtttttgttgacggtgactttcaatattatcgaataccGGAGCGTA
TTGAATTAGTAAAACATCGAATTAAAGGCGCTAGCTGTAGTTCATAAAAG
ATTTCCCACTTGTAAAATTAGGTATTTATTTTATGGTATCCTTTCAAATG
GTCCCTTCCTAACCTTCCATAAACACCATTAAATGTATTCACTATACGAA
ACATGAAACAGTCATAAAGAAAATGGCGACCAAAAACATTACAAATATTG
ATGTCCGATTTTTAGTGGCACCATTtttaattgatgacgtcattgctACT
GTAGTTGAAGTAGATGGTGATATTACGTTTCCTTGTTCATCAAGTGTCTT
TGTAACGGAATAAACAAAGGATGTTGTTTCCATGGTAACTGGACGTGTTC
TGTTTCTATTACAAATTGTCGTCAAGTCATATAAATTTTTCATAGAAGCC
CAACTCTCACATGGTAAGCGTGTAGTCACTATATTATCATCTTTCAAAAC
ACTTTTCTTCATTTGAATACAAATTTGCGTGAAATCGTATTGTCCTGTCG
AGTTTAAGAGCTCACAAACAGATTTTCCTTTCAAGCAATTACATTCTGTC
ATATCTGGTTCATATCCTAATAGCAAATGAATTATATCCAATTTGATTTT
ATCGCAAACTTGGGTTATGTTTAAAATACATCCTTCTTGTTGTTTCGATG
TCGGCGTCGGTGACGGTATCGTTGTCGTTATTGGCAAAAGTGACGGTGTC
GGTATTAATGTTTGTGACGATATCAGTGTCGTTGAATGAGTTTTGGTTTC
ATACAGAATTGACATAAATACCACAATCCAAAATACCATTTTGGGTTTCA
TTTTTGTACCATAAGCTTTTATAAAATTAATACACTGCATTGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_66:96881..100425+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071984 ID=TCONS_00071984|Name=TCONS_00071984|organism=Clytia hemisphaerica|type=transcript|length=3545bp|location=Sequence derived from alignment at scaffold_66:96881..100425+ (Clytia hemisphaerica)
ctttttgacgaaGATTGGGCGAACATTTCCTCTTTTAGCTATACAGGTAT
AAACACGAAGATTAAGGGAAAAGAAATTAGACTAGTGTATTCGAACCAAT
CAGGTTTTGTGTCTTCGCTAGCTATTTACATCAGTGCTTTTGTCTCAATA
ATTTGATCTACCAGGGACCAAATGCTTCGTACCCTAGAATTAACTTCACT
TTCTGAGAgtttgaaatttattgaatgaataaagaaaacatttttatttt
aaaacataGTTTGAAATGTTAAGCTGGATGATTTCGATTCATATCATGGC
ATATTCTCATACACTGTGTTCCACTTTTTCAAGACAATCTGTAAATTCTA
TCGGAATGAGGGACGCAAAAggtgcatttaaaaaaattattattttcaga
TTTGAATATAATTTACTGACAATccaaaaaaatgatgattttgtcTAGTG
GAAAAACGATGCTGTAGCTTCTGCACTGAAGTTTGATAGCTGTCATGCAA
TACCCcttaattttattcatttatttattttcaggactcaaaataaacaa
caaaacaaaaaaacaacaacaaactaaTACAATCATGAATACAATGATAA
TTCTTACCATTGCTACAATCTTCGTGACCAAAACATTTGGTTGTGAGCTA
ACTCTTGGACAGGATTCTGCATTATGCCAAGCAATAGAAGCTGATGTTAC
CAAGGTATCCGCCCAAGGTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTG
ATGCTGACAAAGCCAAAGATGCCTGCGATGAACTACAAACACAAAAAAGT
TCAGGAGAATATAAATTTGAACCAGTTTGTGAAAAGATCAAATTGGTCCT
CCCTGATCTTATTAAGGCTGCACTTGATTGCAACGATCAAGACGCACTCA
AGAATTCTTACGCCAAAGTTGCTCAATGTAATGCTGAAAATGCTGCATCA
TCTTCTTCAAATACAATGATGGTGATGGAAGCGTCTACAACTCAGATGCT
TGATGCTTCATCAATGATGATCAAAGCCTCTTCATCAGCAAATGAAATGC
CAGCAATGTCAACATCCATGGATAATGCAATGATGTCATCAGCAATGGTT
GAAAATATGAATTCAACAATGACAGATATGATGGCTTCAACCAGTAAAAT
GGAAATTTCAGCTTCGAGCTCAATGGCCATGAATGGAACTAGTTCATCAG
TTGTTCCAGGTGCTGCAAATTCAATCACATTCACACATTCTGTATTGGTG
ATCACAGCTCTGGTAGCAATGTTGGCTTCATTGATGTAAATATATGATTA
AAAAACACTCTTATTCAGTGATCGATTCTTCTCTTAAATAATCTTTCAAC
gaattaaaagaacaaattttcgGACAATATTGGCCATTTAAATATGTTGT
AGATTCTAGATAAAAAACGCCATAAGATTGTAATAAAGACACAGACTCAG
AATATTATTGCTGTGCAAGGGCAACAGAGAAGTTTCAATTGGAGAAAATC
TCTGGAAttaattttatctttttagaagacaaagttatttttaaatattt
acatcataaattttgaaactttacaCAGAAAAATTATTGTAGacgtattt
tatattttaattttgaataaaaacaaaattttctttgatcttaCAATTTT
GTTATATGCTTGTGTATTTACTATAGTTTATAAAGTCCCAATTTTTATGA
TAGTCAATATTGCTACGAAGCAATAAAAGCAGTAAAAGCAGTAAAACCAT
TGGATTTCTATTAACtatggataaaatgaaaggTGGAATATATAATctct
cttttttaatgatttagaCAACCCGTGTCATACAGACCCGGGTGGACCCA
ACAGAAAATTTACCCAAGATTCTCATTCAGGCATttaattttagccccac
tgagagattcccattgggatttcgatagaaacaTCCCCACTCTGAGAACA
AGTTCCAACACGCGGATTTAAGACAGGGTTTCAAAAGTCTATAGTGAAAA
AAGCTATTTAGATTTTCATGGTTATAATATTTGAGAGCTTAcgaatattt
ctttaaaaacgCCTTCTTTGTATATTTGCATGATTGATTTGACAAATATT
TCAATGATACACTCCTGTCTGACAACCCTGGTATAATTTTTCATACAGCG
gggataaattttttctttctggaAATCACAATGGaggtagaaattctatt
gttctcagctTTAAAAACCCAGTGCGGGGATGATTTTGGAGCAAAAAGTT
ATACCCTTCATGGCTacacattgaatttcgaatgggggtgaaatcaaagt
caatttcttatTGAGGGTTAAAACTTCCAGAGGCGCGCGGGTGCAGCAGG
CGTTTAATAATCGTACTAGAACATTTCTCCGGTTTAAAAAAGACAGAAAG
GGGTAGGAATATAGCACAGCTTCTTATCAAGTGTCCCTTTCTACCCAGCt
gacacaacgtcgtttcagcgttcatctaacattaaatggacgttgtgtgt
gccagctgggaacctTTGATAAGCACCAGTTAGAGTCGTTATGTAAAACT
GATTTGAAATATACAGTCGACGCtctttaatttgattttcaagggcAATT
TGATTTTCATCCAACAAGGAAGCGTAAGAACAAGTAAAGTATTGTCTATA
AGAGTtttttgttgacggtgactttcaatattatcgaataccGGAGCGTA
TTGAATTAGTAAAACATCGAATTAAAGGCGCTAGCTGTAGTTCATAAAAG
ATTTCCCACTTGTAAAATTAGGTATTTATTTTATGGTATCCTTTCAAATG
GTCCCTTCCTAACCTTCCATAAACACCATTAAATGTATTCACTATACGAA
ACATGAAACAGTCATAAAGAAAATGGCGACCAAAAACATTACAAATATTG
ATGTCCGATTTTTAGTGGCACCATTtttaattgatgacgtcattgctACT
GTAGTTGAAGTAGATGGTGATATTACGTTTCCTTGTTCATCAAGTGTCTT
TGTAACGGAATAAACAAAGGATGTTGTTTCCATGGTAACTGGACGTGTTC
TGTTTCTATTACAAATTGTCGTCAAGTCATATAAATTTTTCATAGAAGCC
CAACTCTCACATGGTAAGCGTGTAGTCACTATATTATCATCTTTCAAAAC
ACTTTTCTTCATTTGAATACAAATTTGCGTGAAATCGTATTGTCCTGTCG
AGTTTAAGAGCTCACAAACAGATTTTCCTTTCAAGCAATTACATTCTGTC
ATATCTGGTTCATATCCTAATAGCAAATGAATTATATCCAATTTGATTTT
ATCGCAAACTTGGGTTATGTTTAAAATACATCCTTCTTGTTGTTTCGATG
TCGGCGTCGGTGACGGTATCGTTGTCGTTATTGGCAAAAGTGACGGTGTC
GGTATTAATGTTTGTGACGATATCAGTGTCGTTGAATGAGTTTTGGTTTC
ATACAGAATTGACATAAATACCACAATCCAAAATACCATTTTGGGTTTCA
TTTTTGTACCATAAGCTTTTATAAAATTAATACACTGCATTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044691XLOC_044691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071984-exon-scaffold_66-1491911889:96881..100425TCONS_00071984-exon-scaffold_66-1491911889:96881..100425Clytia hemisphaericaexon
TCONS_00071984-exon-scaffold_66-1510915933:96881..100425TCONS_00071984-exon-scaffold_66-1510915933:96881..100425Clytia hemisphaericaexon
TCONS_00071984-exon-scaffold_66-1575043694:96881..100425TCONS_00071984-exon-scaffold_66-1575043694:96881..100425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:96881..100425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.298367	1.21798	0	5.77115	24.2455	25.871	17.1579	11.7954	2.13505	3.27376	4.46024	1.83192	0.162128	0.53378	0	0	0	0	13.8325	8.88616	0.185922	0.60728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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