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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071985 ID=TCONS_00071985|Name=TCONS_00071985|organism=Clytia hemisphaerica|type=transcript|length=3044bp
ATTGGGCGAACATTTCCTCTTTTAGCTATACAGgactcaaaataaacaac
aaaacaaaaaaacaacaacaaactaaTACAATCATGAATACAATGATAAT
TCTTACCATTGCTACAATCTTCGTGACCAAAACATTTGGTTGTGAGCTAA
CTCTTGGACAGGATTCTGCATTATGCCAAGCAATAGAAGCTGATGTTACC
AAGGTATCCGCCCAAGGTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTGA
TGCTGACAAAGCCAAAGATGCCTGCGATGAACTACAAACACAAAAAAGTT
CAGGAGAATATAAATTTGAACCAGTTTGTGAAAAGATCAAATTGGTCCTC
CCTGATCTTATTAAGGCTGCACTTGATTGCAACGATCAAGACGCACTCAA
GAATTCTTACGCCAAAGTTGCTCAATGTAATGCTGAAAATGCTGCATCAT
CTTCTTCAAATACAATGATGGTGATGGAAGCGTCTACAACTCAGATGCTT
GATGCTTCATCAATGATGATCAAAGCCTCTTCATCAGCAAATGAAATGCC
AGCAATGTCAACATCCATGGATAATGCAATGATGTCATCAGCAATGGTTG
AAAATATGAATTCAACAATGACAGATATGATGGCTTCAACCAGTAAAATG
GAAATTTCAGCTTCGAGCTCAATGGCCATGAATGGAACTAGTTCATCAGT
TGTTCCAGGTGCTGCAAATTCAATCACATTCACACATTCTGTATTGGTGA
TCACAGCTCTGGTAGCAATGTTGGCTTCATTGATGTAAATATATGATTAA
AAAACACTCTTATTCAGTGATCGATTCTTCTCTTAAATAATCTTTCAACg
aattaaaagaacaaattttcgGACAATATTGGCCATTTAAATATGTTGTA
GATTCTAGATAAAAAACGCCATAAGATTGTAATAAAGACACAGACTCAGA
ATATTATTGCTGTGCAAGGGCAACAGAGAAGTTTCAATTGGAGAAAATCT
CTGGAAttaattttatctttttagaagacaaagttatttttaaatattta
catcataaattttgaaactttacaCAGAAAAATTATTGTAGacgtatttt
atattttaattttgaataaaaacaaaattttctttgatcttaCAATTTTG
TTATATGCTTGTGTATTTACTATAGTTTATAAAGTCCCAATTTTTATGAT
AGTCAATATTGCTACGAAGCAATAAAAGCAGTAAAAGCAGTAAAACCATT
GGATTTCTATTAACtatggataaaatgaaaggTGGAATATATAATctctc
ttttttaatgatttagaCAACCCGTGTCATACAGACCCGGGTGGACCCAA
CAGAAAATTTACCCAAGATTCTCATTCAGGCATttaattttagccccact
gagagattcccattgggatttcgatagaaacaTCCCCACTCTGAGAACAA
GTTCCAACACGCGGATTTAAGACAGGGTTTCAAAAGTCTATAGTGAAAAA
AGCTATTTAGATTTTCATGGTTATAATATTTGAGAGCTTAcgaatatttc
tttaaaaacgCCTTCTTTGTATATTTGCATGATTGATTTGACAAATATTT
CAATGATACACTCCTGTCTGACAACCCTGGTATAATTTTTCATACAGCGg
ggataaattttttctttctggaAATCACAATGGaggtagaaattctattg
ttctcagctTTAAAAACCCAGTGCGGGGATGATTTTGGAGCAAAAAGTTA
TACCCTTCATGGCTacacattgaatttcgaatgggggtgaaatcaaagtc
aatttcttatTGAGGGTTAAAACTTCCAGAGGCGCGCGGGTGCAGCAGGC
GTTTAATAATCGTACTAGAACATTTCTCCGGTTTAAAAAAGACAGAAAGG
GGTAGGAATATAGCACAGCTTCTTATCAAGTGTCCCTTTCTACCCAGCtg
acacaacgtcgtttcagcgttcatctaacattaaatggacgttgtgtgtg
ccagctgggaacctTTGATAAGCACCAGTTAGAGTCGTTATGTAAAACTG
ATTTGAAATATACAGTCGACGCtctttaatttgattttcaagggcAATTT
GATTTTCATCCAACAAGGAAGCGTAAGAACAAGTAAAGTATTGTCTATAA
GAGTtttttgttgacggtgactttcaatattatcgaataccGGAGCGTAT
TGAATTAGTAAAACATCGAATTAAAGGCGCTAGCTGTAGTTCATAAAAGA
TTTCCCACTTGTAAAATTAGGTATTTATTTTATGGTATCCTTTCAAATGG
TCCCTTCCTAACCTTCCATAAACACCATTAAATGTATTCACTATACGAAA
CATGAAACAGTCATAAAGAAAATGGCGACCAAAAACATTACAAATATTGA
TGTCCGATTTTTAGTGGCACCATTtttaattgatgacgtcattgctACTG
TAGTTGAAGTAGATGGTGATATTACGTTTCCTTGTTCATCAAGTGTCTTT
GTAACGGAATAAACAAAGGATGTTGTTTCCATGGTAACTGGACGTGTTCT
GTTTCTATTACAAATTGTCGTCAAGTCATATAAATTTTTCATAGAAGCCC
AACTCTCACATGGTAAGCGTGTAGTCACTATATTATCATCTTTCAAAACA
CTTTTCTTCATTTGAATACAAATTTGCGTGAAATCGTATTGTCCTGTCGA
GTTTAAGAGCTCACAAACAGATTTTCCTTTCAAGCAATTACATTCTGTCA
TATCTGGTTCATATCCTAATAGCAAATGAATTATATCCAATTTGATTTTA
TCGCAAACTTGGGTTATGTTTAAAATACATCCTTCTTGTTGTTTCGATGT
CGGCGTCGGTGACGGTATCGTTGTCGTTATTGGCAAAAGTGACGGTGTCG
GTATTAATGTTTGTGACGATATCAGTGTCGTTGAATGAGTTTTGGTTTCA
TACAGAATTGACATAAATACCACAATCCAAAATACCATTTTGGGTTTCAT
TTTTGTACCATAAGCTTTTATAAAATTAATACACTGCATTGGCC Run BLAST on NCBI protein sequence of TCONS_00071985-protein >TCONS_00071985-protein ID=TCONS_00071985-protein|Name=TCONS_00071985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
WANISSFSYTGLKINNKTKKQQQTNTIMNTMIILTIATIFVTKTFGCELT
LGQDSALCQAIEADVTKVSAQGATAVSGVCSCDADKAKDACDELQTQKSS
GEYKFEPVCEKIKLVLPDLIKAALDCNDQDALKNSYAKVAQCNAENAASS
SSNTMMVMEASTTQMLDASSMMIKASSSANEMPAMSTSMDNAMMSSAMVE
NMNSTMTDMMASTSKMEISASSSMAMNGTSSSVVPGAANSITFTHSVLVI
TALVAMLASLM Run BLAST on NCBI transcript from alignment at scaffold_66:96894..100425+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071985 ID=TCONS_00071985|Name=TCONS_00071985|organism=Clytia hemisphaerica|type=transcript|length=3532bp|location=Sequence derived from alignment at scaffold_66:96894..100425+ (Clytia hemisphaerica)
ATTGGGCGAACATTTCCTCTTTTAGCTATACAGGTATAAACACGAAGATT
AAGGGAAAAGAAATTAGACTAGTGTATTCGAACCAATCAGGTTTTGTGTC
TTCGCTAGCTATTTACATCAGTGCTTTTGTCTCAATAATTTGATCTACCA
GGGACCAAATGCTTCGTACCCTAGAATTAACTTCACTTTCTGAGAgtttg
aaatttattgaatgaataaagaaaacatttttattttaaaacataGTTTG
AAATGTTAAGCTGGATGATTTCGATTCATATCATGGCATATTCTCATACA
CTGTGTTCCACTTTTTCAAGACAATCTGTAAATTCTATCGGAATGAGGGA
CGCAAAAggtgcatttaaaaaaattattattttcagaTTTGAATATAATT
TACTGACAATccaaaaaaatgatgattttgtcTAGTGGAAAAACGATGCT
GTAGCTTCTGCACTGAAGTTTGATAGCTGTCATGCAATACCCcttaattt
tattcatttatttattttcaggactcaaaataaacaacaaaacaaaaaaa
caacaacaaactaaTACAATCATGAATACAATGATAATTCTTACCATTGC
TACAATCTTCGTGACCAAAACATTTGGTTGTGAGCTAACTCTTGGACAGG
ATTCTGCATTATGCCAAGCAATAGAAGCTGATGTTACCAAGGTATCCGCC
CAAGGTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTGATGCTGACAAAGC
CAAAGATGCCTGCGATGAACTACAAACACAAAAAAGTTCAGGAGAATATA
AATTTGAACCAGTTTGTGAAAAGATCAAATTGGTCCTCCCTGATCTTATT
AAGGCTGCACTTGATTGCAACGATCAAGACGCACTCAAGAATTCTTACGC
CAAAGTTGCTCAATGTAATGCTGAAAATGCTGCATCATCTTCTTCAAATA
CAATGATGGTGATGGAAGCGTCTACAACTCAGATGCTTGATGCTTCATCA
ATGATGATCAAAGCCTCTTCATCAGCAAATGAAATGCCAGCAATGTCAAC
ATCCATGGATAATGCAATGATGTCATCAGCAATGGTTGAAAATATGAATT
CAACAATGACAGATATGATGGCTTCAACCAGTAAAATGGAAATTTCAGCT
TCGAGCTCAATGGCCATGAATGGAACTAGTTCATCAGTTGTTCCAGGTGC
TGCAAATTCAATCACATTCACACATTCTGTATTGGTGATCACAGCTCTGG
TAGCAATGTTGGCTTCATTGATGTAAATATATGATTAAAAAACACTCTTA
TTCAGTGATCGATTCTTCTCTTAAATAATCTTTCAACgaattaaaagaac
aaattttcgGACAATATTGGCCATTTAAATATGTTGTAGATTCTAGATAA
AAAACGCCATAAGATTGTAATAAAGACACAGACTCAGAATATTATTGCTG
TGCAAGGGCAACAGAGAAGTTTCAATTGGAGAAAATCTCTGGAAttaatt
ttatctttttagaagacaaagttatttttaaatatttacatcataaattt
tgaaactttacaCAGAAAAATTATTGTAGacgtattttatattttaattt
tgaataaaaacaaaattttctttgatcttaCAATTTTGTTATATGCTTGT
GTATTTACTATAGTTTATAAAGTCCCAATTTTTATGATAGTCAATATTGC
TACGAAGCAATAAAAGCAGTAAAAGCAGTAAAACCATTGGATTTCTATTA
ACtatggataaaatgaaaggTGGAATATATAATctctcttttttaatgat
ttagaCAACCCGTGTCATACAGACCCGGGTGGACCCAACAGAAAATTTAC
CCAAGATTCTCATTCAGGCATttaattttagccccactgagagattccca
ttgggatttcgatagaaacaTCCCCACTCTGAGAACAAGTTCCAACACGC
GGATTTAAGACAGGGTTTCAAAAGTCTATAGTGAAAAAAGCTATTTAGAT
TTTCATGGTTATAATATTTGAGAGCTTAcgaatatttctttaaaaacgCC
TTCTTTGTATATTTGCATGATTGATTTGACAAATATTTCAATGATACACT
CCTGTCTGACAACCCTGGTATAATTTTTCATACAGCGgggataaattttt
tctttctggaAATCACAATGGaggtagaaattctattgttctcagctTTA
AAAACCCAGTGCGGGGATGATTTTGGAGCAAAAAGTTATACCCTTCATGG
CTacacattgaatttcgaatgggggtgaaatcaaagtcaatttcttatTG
AGGGTTAAAACTTCCAGAGGCGCGCGGGTGCAGCAGGCGTTTAATAATCG
TACTAGAACATTTCTCCGGTTTAAAAAAGACAGAAAGGGGTAGGAATATA
GCACAGCTTCTTATCAAGTGTCCCTTTCTACCCAGCtgacacaacgtcgt
ttcagcgttcatctaacattaaatggacgttgtgtgtgccagctgggaac
ctTTGATAAGCACCAGTTAGAGTCGTTATGTAAAACTGATTTGAAATATA
CAGTCGACGCtctttaatttgattttcaagggcAATTTGATTTTCATCCA
ACAAGGAAGCGTAAGAACAAGTAAAGTATTGTCTATAAGAGTtttttgtt
gacggtgactttcaatattatcgaataccGGAGCGTATTGAATTAGTAAA
ACATCGAATTAAAGGCGCTAGCTGTAGTTCATAAAAGATTTCCCACTTGT
AAAATTAGGTATTTATTTTATGGTATCCTTTCAAATGGTCCCTTCCTAAC
CTTCCATAAACACCATTAAATGTATTCACTATACGAAACATGAAACAGTC
ATAAAGAAAATGGCGACCAAAAACATTACAAATATTGATGTCCGATTTTT
AGTGGCACCATTtttaattgatgacgtcattgctACTGTAGTTGAAGTAG
ATGGTGATATTACGTTTCCTTGTTCATCAAGTGTCTTTGTAACGGAATAA
ACAAAGGATGTTGTTTCCATGGTAACTGGACGTGTTCTGTTTCTATTACA
AATTGTCGTCAAGTCATATAAATTTTTCATAGAAGCCCAACTCTCACATG
GTAAGCGTGTAGTCACTATATTATCATCTTTCAAAACACTTTTCTTCATT
TGAATACAAATTTGCGTGAAATCGTATTGTCCTGTCGAGTTTAAGAGCTC
ACAAACAGATTTTCCTTTCAAGCAATTACATTCTGTCATATCTGGTTCAT
ATCCTAATAGCAAATGAATTATATCCAATTTGATTTTATCGCAAACTTGG
GTTATGTTTAAAATACATCCTTCTTGTTGTTTCGATGTCGGCGTCGGTGA
CGGTATCGTTGTCGTTATTGGCAAAAGTGACGGTGTCGGTATTAATGTTT
GTGACGATATCAGTGTCGTTGAATGAGTTTTGGTTTCATACAGAATTGAC
ATAAATACCACAATCCAAAATACCATTTTGGGTTTCATTTTTGTACCATA
AGCTTTTATAAAATTAATACACTGCATTGGCC Coding sequence (CDS) from alignment at scaffold_66:96894..100425+ >TCONS_00071985 ID=TCONS_00071985|Name=TCONS_00071985|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_66:96894..100425+ (Clytia hemisphaerica)
TGGGCGAACATTTCCTCTTTTAGCTATACAGgactcaaaataaacaacaa
aacaaaaaaacaacaacaaactaaTACAATCATGAATACAATGATAATTC
TTACCATTGCTACAATCTTCGTGACCAAAACATTTGGTTGTGAGCTAACT
CTTGGACAGGATTCTGCATTATGCCAAGCAATAGAAGCTGATGTTACCAA
GGTATCCGCCCAAGGTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTGATG
CTGACAAAGCCAAAGATGCCTGCGATGAACTACAAACACAAAAAAGTTCA
GGAGAATATAAATTTGAACCAGTTTGTGAAAAGATCAAATTGGTCCTCCC
TGATCTTATTAAGGCTGCACTTGATTGCAACGATCAAGACGCACTCAAGA
ATTCTTACGCCAAAGTTGCTCAATGTAATGCTGAAAATGCTGCATCATCT
TCTTCAAATACAATGATGGTGATGGAAGCGTCTACAACTCAGATGCTTGA
TGCTTCATCAATGATGATCAAAGCCTCTTCATCAGCAAATGAAATGCCAG
CAATGTCAACATCCATGGATAATGCAATGATGTCATCAGCAATGGTTGAA
AATATGAATTCAACAATGACAGATATGATGGCTTCAACCAGTAAAATGGA
AATTTCAGCTTCGAGCTCAATGGCCATGAATGGAACTAGTTCATCAGTTG
TTCCAGGTGCTGCAAATTCAATCACATTCACACATTCTGTATTGGTGATC
ACAGCTCTGGTAGCAATGTTGGCTTCATTGATGTAATGGGCGAACATTTC
CTCTTTTAGCTATACAGgactcaaaataaacaacaaaacaaaaaaacaac
aacaaactaaTACAATCATGAATACAATGATAATTCTTACCATTGCTACA
ATCTTCGTGACCAAAACATTTGGTTGTGAGCTAACTCTTGGACAGGATTC
TGCATTATGCCAAGCAATAGAAGCTGATGTTACCAAGGTATCCGCCCAAG
GTGCTACAGCTGTCAGTGGAGTTTGCAGTTGTGATGCTGACAAAGCCAAA
GATGCCTGCGATGAACTACAAACACAAAAAAGTTCAGGAGAATATAAATT
TGAACCAGTTTGTGAAAAGATCAAATTGGTCCTCCCTGATCTTATTAAGG
CTGCACTTGATTGCAACGATCAAGACGCACTCAAGAATTCTTACGCCAAA
GTTGCTCAATGTAATGCTGAAAATGCTGCATCATCTTCTTCAAATACAAT
GATGGTGATGGAAGCGTCTACAACTCAGATGCTTGATGCTTCATCAATGA
TGATCAAAGCCTCTTCATCAGCAAATGAAATGCCAGCAATGTCAACATCC
ATGGATAATGCAATGATGTCATCAGCAATGGTTGAAAATATGAATTCAAC
AATGACAGATATGATGGCTTCAACCAGTAAAATGGAAATTTCAGCTTCGA
GCTCAATGGCCATGAATGGAACTAGTTCATCAGTTGTTCCAGGTGCTGCA
AATTCAATCACATTCACACATTCTGTATTGGTGATCACAGCTCTGGTAGC
AATGTTGGCTTCATTGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071985-exon-scaffold_66-1491911889:96894..96926 | TCONS_00071985-exon-scaffold_66-1491911889:96894..96926 | Clytia hemisphaerica | exon |
| TCONS_00071985-exon-scaffold_66-1510915933:96894..96926 | TCONS_00071985-exon-scaffold_66-1510915933:96894..96926 | Clytia hemisphaerica | exon |
| TCONS_00071985-exon-scaffold_66-1575043694:96894..96926 | TCONS_00071985-exon-scaffold_66-1575043694:96894..96926 | Clytia hemisphaerica | exon |
| TCONS_00071985-exon-scaffold_66-1491911889:97415..100425 | TCONS_00071985-exon-scaffold_66-1491911889:97415..100425 | Clytia hemisphaerica | exon |
| TCONS_00071985-exon-scaffold_66-1510915933:97415..100425 | TCONS_00071985-exon-scaffold_66-1510915933:97415..100425 | Clytia hemisphaerica | exon |
| TCONS_00071985-exon-scaffold_66-1575043694:97415..100425 | TCONS_00071985-exon-scaffold_66-1575043694:97415..100425 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:96894..100425 + |
Blast
The following BLAST results are available for this feature:
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