TCONS_00071997 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00071997
Unique Name	TCONS_00071997
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1277

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_66:160133..167098-

transcript sequence

>TCONS_00071997 ID=TCONS_00071997|Name=TCONS_00071997|organism=Clytia hemisphaerica|type=transcript|length=1277bp
aCATTTAATCCACTGACTGAAGTGACTATCCCTTATTCGTACATTTAGAT
TAATATAAAAAGCTTGCAAACATGGGAAAGAAAGCTAAAAttggaaagaa
gagaaaagataAGTTTTACCATCTAGCTAAAGAAACAGGTTACAGGGCCA
GATCTGCTTTCAAGTTGATTCAATTGAATAGGAAATTTGGCTTTTTACAA
GAATCAAGAGCTTTGATTGATCTTTGTGCTGCCCCTGGAGGATGGCTTCA
AGTTGCTTCAAACTTTATGCCCATGTCAAGTGTTATTCTCGGTGTTGATT
TGGTTCCCATTAAAGCTATAAAGAATGTCACAACTTTTGCTTCAGATATT
ACAACTGACAATTGTCGTCAGTTGTTGAAAAAAGAGTTAAAAGGATGGAA
AGCAGACGTTGTACTCAATGATGGTGCACCCAACGTTGGTTCAGCATGGA
TTCAAGATGCTTTCACTCAATCACAATTGGCATTGTCAGCTTTGAAACTT
GCGTCAgaatttttaagaaaaggaGGCTGGTTTATCACAAAGattttccg
CTCAAAAGATTACACAGCTTTACTGTGGGTTTTTCAACAATTATTCAAAA
AAGTACATTCTACAAAGCCACAGGCTTCTCGTAGTGAATCTGCAGAAATC
TTTGTGGTTTGTCAGGGCTTCCTTGCACCAGACAAATTGGACGAAAAATT
CTTGGATCCTAGACATGTTTTTAAAGAGATCCAGGACAGTTCTAAAGTaa
aattggatgttttaagACCAGAGAAACATGTGCGACACAGAGAAGGATAC
GATGAAAACAACACTACCATGTTTGAAAAGATAACTGCTatggatttttt
caaaagtccaaATGCTATTGATGTTTTATCCACTGTTAACAAAATCGAAG
TTATAAacgaagaaatcaaaaatcatgcAGAAACAAACGAAGAAATCTTA
CATTGCTGTGAAGACATTAAAGTTCTTGGGAGAAAGGAGCTCAAGAATCT
ATTCACATGGAGAAAGAAACTTCGAAAGGCATTGGAATTGCACAAAGACG
AAGAAGAAGCAGAAGACAAATCAAAAGAAGAAGTTCAAGAAGAACCAATG
AATGAAGAGGAACAGTTAGATGAAATGGTCAGTAATTTAAAAGACGAAGA
AGAAAAAGATCTTAAAAAgaaaaagaaaaaagttcgtGAGCAGAAAAAGA
AATTACGGGAGAGACTGGCAGGCAAACTGGCGGACGCTATGGGCGAAACT
GAAAATCAAGATCAAGAGATGTTTGCA

Run BLAST on NCBI

transcript from alignment at scaffold_66:160133..167098-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00071997 ID=TCONS_00071997|Name=TCONS_00071997|organism=Clytia hemisphaerica|type=transcript|length=6966bp|location=Sequence derived from alignment at scaffold_66:160133..167098- (Clytia hemisphaerica)
ACATTTAATCCACTGACTGAAGTGACTATCCCTTATTCGTACATTTAGAT
TAATATAAAAAGCTTGCAAACATGGGAAAGAAAGCTAAAATTGGAAAGAA
GAGAAAAGATAAGTTTTACCATCTAGCTAAAGAAACAGGTACGTATGGGG
TAATAAAACTAAGAACAGAAAATAAATTATTCAAAAAATCATTTATAAAT
TCAATCTCAACTGTTTTCTAANAATAAAACTAAGAACAGCAAATAAATTA
TTCAAAAAATCATTTATAAATTCAATCTCAACTGTTTTTTAAATGCTTTG
TTTTTGTTTGGTCCTGATTGGTTTTCCTGTGACGTTTGGATTCGTGATTT
TTTGTATACCTTGTTACAAAGGAACTGTCTGTTGGCAGAGCTTATCAAAA
ACTTGAAAATTGTGACTTTTATTTTAGGTTACAGGGCCAGATCTGCTTTC
AAGTTGATTCAATTGAATAGGAAATTTGGCTTTTTACAAGAATCAAGAGC
TTTGATTGATCTTTGTGCTGCCCCTGGAGGATGGTATGTTACTTTTATCA
AAGATCTCTATTTTCAATATTTTTAACTCTGCCAGACTATTTCGTTCACT
CATTTTGTTAAGGTGTGTACTAGGTTAAAATATAAGGAATCAAAGTGATG
TGAATAAATTCTGTCTTGTCATCCTTATAATTTATGATTTAACTATAAAT
TTTATAGGCTTCAAGTTGCTTCAAACTTTATGCCCATGTCAAGTGTTATT
CTCGGTAAGTATGTTCAAATCTCATTCGTTGTTTTTTTTTAATATGGATT
TCCTTTCTGGCAATGCATGAATGACTGAAACGTTTTCAAAAGTTAAGTCA
GATTAATTAGAAAATTTCATCATTTAGGAAATGATCAGCTTCAGTAAAAC
ATAAAATAGTCTGAAATTTTAAAGATTACATTATCAAAATTGAAAAATGT
TTTAATCAACATAGGATGAAAGAAATATAATGAATAAAATAATCCCATTC
ATTGATCCCATTTATTAATCCCTTAGTTACGTAGTGTCTACCTCTAATAA
GAACAGCACCCCAGAGCCCAGAGGAACACTAACCACCAAGAATCTCTATA
ATCTTTTGTCTCTGATATACTCCTGATTTAATCAGTTTATCTTCTCTATG
TTACAGGTGTTGATTTGGTTCCCATTAAAGCTATAAAGAATGTCACAACT
TTTGCTTCAGATATTACAACTGACAATTGTCGTCAGGTATTTCCCTTAAA
CAAGACTTCAAAAAATTTTGGTTTGCCGTCATCCGACCTACCCTACAATT
GTTGCTTTAAAAAGAAGAATTTTTTTCTTAAAATCAAAACCTCTATCGTG
TCTATCTCGTTCTATCTTTAGAATTGTGAATTTCCTTTTACTGTAGCTCT
TCTGTTTTCATTTCAAAACTAAACGGACTTTTTTATATTTATGAAAACTG
ACTTTCTAGATATTTAAAAAACTCTGATCAAATTGCACATTAACACAGAG
TGTCAAAAACCAAATCTTTTGTGGGTTACCTGGTATTATTTAAAATCTTT
AATCTACAATAATCAAACAAGCTCAAGTCAAAATCAATAATTTTTACAAA
TCTCTGTTTTTAAACTACTAAATATTGATATTTTCTTGTTTCTTTAGTTG
TTGAAAAAAGAGTTAAAAGGATGGAAAGCAGACGTTGTACTCAATGATGG
TGCACCCAACGTTGGTTCAGCATGGATTCAAGATGCTTTCACTCAATGTT
AGATGTTATTGAATTTATTACTGTTCTCTCATTTAGAATAGCATTTTTCT
TTTTTTCGTTTTTTTCATAACTTTGAGCGATTTGAGAAATAAATAATAAA
TATTAGTTCTAATTTACAACTGCTTCTTGGAATGATATTTTGTGATTTTT
ATCTGACAATTATGAAATAAAATTCCCCAATTGTTGATTCAATCTATTAT
AAACTATACTAAGACTAACAATTTTTTTTTATACTTCAGCACAATTGGCA
TTGTCAGCTTTGAAACTTGCGTCAGAATTTTTAAGAAAAGGAGGCTGGTT
TATCACAAAGGTTAGCATAACTTTAAAAAATTGATGAATACTGTGTTTTT
AATTTTTTTGCATAAAGTAACTTTTTTTGCAGGAAGAGCGTTTTGTTGCA
TCAACAATTTCAACATTATGCATTATAATTTGTGACCCCCCAAGCAATTT
GGAGTACATTAAAAATGAGACCAGTCTTGGAGCAGCGAAACGATTACCGT
GCGGTAAAAAGATACCTTTGTGTCGACCAGAAATCATCCAAAATCTTTCC
TAAAAATTCCATTCATACGCACTTGATCGGTCACTAAAGAGCAACATTAG
AAAAAGTCCGATAGTCAGTGCGTTCATGGTGCAGACATTTTGTTGTTGTT
GTTTTGCTTGTTTGAACTCGAGGCTGAAGTTCTTACGTCAACCGAAAGAA
GTATAAACAAACAATGGGTCTGCACCATCGCAAGTAGGCGTTTTCTGTCT
GCTTGGACCACAAAGTACTGTCTTTTGACTGCTTTTTTTAGGTTTAGTCG
CACAATTAACCAGTGTGAAAGCGGCAGAAGTACCACTGCACCAAGACGGG
TCTCATTTTTAATATACTCCAAATTGCTTGGGAGGTCACATTTTGTTCAT
TACCTGTTCATTACCTTTGGATATATGACCGCTTCGTGACCTTAGAGATG
ACTGATCCTCTTTATTTTTAGATTTTCCGCTCAAAAGATTACACAGCTTT
ACTGTGGGTTTTTCAACAATTATTCAAAAAAGTACATTCTACAAAGCCAC
AGGTACAGTACTAAGCATTTGAAATCAAGTTTACTATTTAAAATCATGGG
CATCAGACTTCAACAGACCTCAATTGATTCTTTTGATTGCAAATCTCTTT
GTTTACTTGTTTAAGTGATTTGAGCAAGATTGAAAAAGAATAGAAAATCA
ATCAATATTTGTTTTGACAAATGAGAAAGAAGAATGCTTAAAGTGAAACT
AAACCTTCAGTCATACTTTTTACTTATTTCAGGCTTCTCGTAGTGAATCT
GCAGAAATCTTTGTGGTTTGTCAGGTAAATCTCATGTGTTTTAAAGATCT
GGATCCAGAAACACACACAAACTTCTTTAGTAAAGTAATGNTCAGGTAAA
TCTCATGTGTTAAAGATCTGGATCCAGAAACACACACAAACTTCTTTAGT
AAAGTAATGTAAAAACACCCCTTCTCACAGACCCACTATGGGAACCCTTC
CCATTGGAAAAATTAGCCAAATTATCGTCCCTGGTTGAAAAATTTTACTC
CAATTTTTGTCCCCACTGAAAATAATCAAATAAACCAATCCTCACTGCAA
AATATTATGATAATTTTCCCATCCCGCTGATATTCCTGACTTGAAAACAT
AATAATTTACATCCTTGGTCATAAAAAATATGGGAATACCAATCCCCATC
GGGTTTCATTCTGTTATTTTTACCCCCACCGGCTAAAAAGATCATACCAG
GTCTTTGAGAAGGGGTTGTGAAAAATTTAGCTCTGCGTATTATAAGTATA
CCTAAACAATAAAACCAGGTTGAATTTGGGTTTAAAACAATAAGTTTAGG
AACAATAGAATATAAAGATAAGCGCTCTTTTGATTTAATATTTACTTTAT
CTTGTATTAATACAATACTTTATTAAAAATGAATCAATATTTGCTTCTTT
TTCAAGGGCTTCCTTGCACCAGACAAATTGGACGAAAAATTCTTGGATCC
TAGACATGTTTTTAAAGAGATCCAGGACAGTTCTAAAGTAAAATTGGATG
TTTTAAGACCAGAGGTAAAATAATTTCCTAGTTGTATTCGCCGACCTTTA
TATATCCCTGGACCAAGCTATATCCGCCATCTTTGATTGACGTTTCTTTG
AATTGGTACCCATAAAGAAGCCATTGCAGTGTTAAAAATTAACGTCTAAC
GGCACTACTTTATCAAAAGTTTTTGAGGGAAAGTAGATCATAGTACTCTC
GATGCATTTACACCGCTATTGAGTAGTGCAGTCGTTAGGGTACCACTTTT
CAAAAAACTTCGATCAAAGATTTTGCTTGGCCAGGATTGAAAAACTTGTT
CAGGGTATAAAGGTCAGTGGTTATATTGTTTTTCTATTTTGATCATCCCT
TATTAAAGGAAATTCTCTTCAGATTAAAATCAAGACCTACCTTAACCTCT
AGAAATACAATAATACTCAAAATAGGCTCATTTTCTGACCCTTAGTCAAC
AGGCCAAATCTCTGAACCACTTCACCATAAACCAAAAAATATCATGGCTG
ATTAAAAAAACCTTTTGGCCGCAATTCCTTTTTTCAACATTATGGTAAGG
TCTGATATTGTCTAAAAATTGGTTATTATGTGGAATATGTTTAAGAAAAT
CAATAAATAACTAGCAAGGCATAGTGATTGTATAGAATCCAAACAAATCC
AATTTACTAGAAACATGTGCGACACAGAGAAGGATACGATGAAAACAACA
CTACCATGTTTGAAAAGATAACTGCTATGGATTTTTTCAAAAGTCCAAAT
GCTATTGATGTTTTATCCACTGTTAACAAAGTAAGTATATTATGCAGTGT
TGTGTTGTAACTTTTCCGTTTGTAGGCTGAGGTTTTTAACTTACAGTAAT
TTGTCTTCCCAATTCAATTCTGATTATCAACACTATGTTCCATGATTCAA
AGCAGCCCTCTCTGAATCTGACTTATTATCCAGAATATCCATACAATTCA
AATTCTTCATATCTCGGACTGATTCATCAACATACAAACGTAAAAAATAC
AGAGGGACTGGATACATATTCTCATACTTTGTTTTGTCTTTGGGCTGCTT
TGGGCTTTTCTCGGAAGCCAATCAAGGTTTCCCAAACCTTTTCAAGAACT
TGTCTTTGATAGCTGAGTGCTTTTAGGCATCATTGTATGTTGCAAACCAA
AAGTTCCCTGATTTCATCCCTGCATTTTTCAAGCATCTTTTATTTCAAAG
AATGCCAAACACGATTGAAAGACTCTAATAGTCTTGGATGATAGGCTCTT
ATTATAATTATCACCAAAAGGAACTACATACACATCGTTTGCCTTACATT
TTCAAAACGACCATTATTTTTTTGCTTTTCAGATCGAAGTTATAAACGAA
GAAATCAAAAATCATGCAGAAACAAACGAAGAAATCTTACATTGCTGTGA
AGACATTAAAGTTCTTGGGAGAAAGGAGCTCAAGTAACTGCATTTACATT
TTTTTCTGATTCGAGGAAGAAAAATTAAAACAACTTCAATACCTTTGTTA
GGGTTTTGATGGAAAGGAATGTTTATTTGTAATTTACAATTTACAATTAA
ATTAAAAACGATTTGCTTGACTATTTTTCGAATTATTGCGAATCAAAACT
TTAGCGATTTATCTTAATTTTCCTACTTCAACTTTCATCTATTTTGTTTT
ATCCTTAAGGAATCTATTCACATGGAGAAAGAAACTTCGAAAGGCATTGG
AATTGCACAAAGACGAAGAAGAAGCAGAAGACAAGTAAAGCATTTGTTAC
TTTTCGTCCACGGGGAGGAGTGGACATGGGTTAATTGGGTGGTTCAAACC
GCCCTACATTATTATCACCCCCCCCCTAAAGGCCAAACTTTCCCCTATAT
ATAAATTTTTCAAACCCCCCTTAATAACCGTGGTCGTGAACCCTGGGATA
TTTTTGACAGGAATGATTTGAAAGTGGGATCAGATTTTTGAATATTTTAG
CAAGCAGAGAGGCATCAAGTACCATTTTGAGAATCTTTGGTATGACCTGG
CTGGGGGTTGAACCCACAACCTTGCGCTCTGTAGCCGGATGCTCTACCAC
TGCACTACGGTCGGTCTGTAAAAGAGTCATCATTATCAATTTTCATAAAT
AGTAAAAACCACCAAGGTTTATGACGATGTCGGTTTTTACAATCAACTGA
ATTCACCAAAACTGAATGCAATAACGCAGAACTTTATTTCTTCAAATTTT
TCAGATCAAAAGAAGAAGTTCAAGAAGAACCAATGAATGAAGAGGTACTC
ACTTGTTGGAAAATTTGGCAACTGAATTCTCCAGCGTTCCTAGTTCTAAA
CAGCGCGGTGGCATGTCTTATACTTTTTGTATAAGACTGCTTTAAGTAAT
CCTTAAACTGATTTGAAATTTTTTTTGCAAGATAACTTTTTCCAGTCAAG
TAATTTTGAAATCTTTAAGAATGGTGCGTTGGAATCCTATTTTTCTCTTG
CTAAAAGTAAAAATCTTGTGACTCGAGAATTACCACTTTGAAAAAATTAT
AGCAAAGCAAAAAGGTTTTAGAGGTTGCTCAAGGTAGTTCGACTTGTCTA
GATTTTCTTGAATGACAGGTGAGAATTATTTCATTCATTCTTTAAACATT
TTCTTTGGTAATTTTTAGGAACAGTTAGATGAAATGGTCAGTAATTTAAA
AGACGAAGAAGAAAAAGATCTTAAAAAGTAAGGTCCAGCATTCTTGATTC
ATAAAATCATCATGTTGGTGTTTTTAAATAGACATTAGGAAAAATAATTT
TACTACTTGTCTTAGGAATAAAACACTTATCGAAATACTGGTACTTTTGG
CCATCATTTTAGCGTAAAAGAAACACCTTGCATTGTTTCCTTATCTAATT
TCAGAATTAATCATTTCAGACTAAATTTGACGTCATTCGCACTGGTCTAA
ATCGAGGGCCCCTCCAAAGAGTCTAAAATTTCATCAACTTTCGAACTGAC
CACTACTTGCCTCTATCCCCAGGAAAAGTGTTATGGACTTCAAAAGCCCC
TCCCTGGTTTAATTAATTTTGGCGTAAGACGATAAATCTTTTTTTTTTTC
TTCGAAGGAAAAAGAAAAAAGTTCGTGAGCAGAAAAAGAAATTACGGGAG
AGACTGGCAGGCAAACTGGCGGACGCTATGGGCGAAACTGAAAATCAAGA
TCAAGAGATGTTTGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044697	XLOC_044697	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_66	supercontig	scaffold_66:160133..167098 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17009	0.925712	0.543548	0.245588	7.9197	5.82591	7.50585	8.60515	2.52076	2.70565	1.72749	2.01451	3.04097	4.12175	2.77773	3.66351	2.14629	3.97196	0.541879	0.7728	3.19006	5.63007	1.44548	2.3947	5.80489	6.58919	1.01682	0.163341	1.24428	3.32646

Blast

[Close]

BLAST of TCONS_00071997 vs. Swiss-Prot (Human)
Match: SPB1 (pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=2)

HSP 1 Score: 398.667 bits (1023), Expect = 6.991e-130
Identity = 197/319 (61.76%), Postives = 253/319 (79.31%), Query Frame = 3

Query:   72 MGXXXXXXXXXXXXFYHLAKETGYRARSAFKLIQLNRKFGFLQESRALIDLCAAPGGWLQVASNFMPMSSVILGVDLVPIKAIKNVTTFASDITTDNCRQLLKKELKGWKADVVLNDGAPNVGSAWIQDAFTXXXXXXXXXXXXXEFLRKGGWFITKIFRSKDYTALLWVFQQLFKKVHSTKPQASRSESAEIFVVCQGFLAPDKLDEKFLDPRHVFKEIQDSSKVKLDVLRPEKHVRHREGYDENNTTMFEKITAMDFFKSPNAIDVLSTVNKIEVINEEIKNHAETNEEILHCCEDIKVLGRKELKNLFTWRKKLRK 1028
            MGKK K+GK R+DKFYHLAKETGYR+RSAFKLIQLNR+F FLQ++RAL+DLCAAPGGWLQVA+ FMP+SS+I+GVDLVPIK + NV T   DITT+ CRQ L+KELK WK DVVLNDGAPNVG++W+ DA++Q+ L L AL+LA +FL +GG FITK+FRS+DY  LLW+FQQLF++V +TKPQASR ESAEIFVVCQGFLAPDK+D KF DP+  FKE++  +K   +++  +K     EGY E + T++ + +  DF ++ N +D LS  ++I V +EE+  H  T E+I  CC+DI+VLGRKEL++L  WR KLR+
Sbjct:    1 MGKKGKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTELVTKKKP--KAEGYAEGDLTLYHRTSVTDFLRAANPVDFLSKASEIMVDDEELAQHPATTEDIRVCCQDIRVLGRKELRSLLNWRTKLRR 317

The following BLAST results are available for this feature:

BLAST of TCONS_00071997 vs. Swiss-Prot (Human)

BLAST of TCONS_00071997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPB1	6.991e-130	61.76	pre-rRNA processing protein FTSJ3 OS=Homo sapiens ...	[more]

You are here

TCONS_00071997 (transcript) - C. hemisphaerica