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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071998 ID=TCONS_00071998|Name=TCONS_00071998|organism=Clytia hemisphaerica|type=transcript|length=1402bp
ttagtttttcttaaaattctcaCTCAAATTAAAAAGAAGTGAGCTGATTT
TTGCTAAAGAAGATGAAGGAAGCTGCGCTCGTCATAATGGTGTATCTCTT
TCTACATCAAATGGGAAGAAGCCACGAGAAATCGAGTTTTAAAGCTCAAA
ACAAAGACTTTTTGACTCGACGTCAAAATCACAACAACAAAAGGAGGTTT
TATGCACCGATCCATCTGTATGCAAATCATTCGGCAACATTTTGACTCCT
CGTCTCTGGTGACATTGAAACTAATCCGGGTCCGCTCGCGTGTCCTGTTT
GTGCCAAAACTGTCCGTAAGAATTCGTACCACTTGGAATGCAAGGTTTGT
CTCAACTCGACTCACGTAAAATGTATTTATAAAACTGTAAAAAACTTCTC
AGACAAACACAATTTATGGACATGTCACGACTGTCTGCTTACTGAATTAC
CGTTCAACAATGTCGATATAGACTTTCTACTATCAGACCCCTCGACCGTG
AATGATATCCCAGCGCAACAAGACACTCAAATCCAGTTGGATCTTCTAAA
TGCCAACCGAAACAACTACAACATTGCGCACCTTAACATTCAATCTATCA
AAAATAAGACTGCCCAACTTGAAGCCATGCTCCTAAAACACAAGTTCGAT
ATCCTAACAATCTCTGAGACATGGCTCGTTGACAATCCTGCACTCATCCG
ACAACTCAACTTCTCCGGTTATCATCCTTTCAGATACAATAACAGAAATG
GCAAACGTGGCGGTGGCGTCGGAGCTTACTTCAAAGACGGCATCAAACAT
CGCCCAAGAACTGACATTGACAAGAAAGATACAACGATCGAACACCAGTG
GTTTGAAGTGAAGGGAAAGAAAAGTCCCTTTCTTATAGCCGTCTTCTATC
AACCAAGTTCCGAAGACGTTGACAAACGTGTTTGGCttcaaaaattcgaa
acattaaTATCGTACGTTCACACCATCTGGTCTGATCCAATCGTGATTAC
TGGTGATACAAATATCGATCTCCTGAAAGATAACTACAACGTTGCTGACG
AATATAAAGATACCCTCGATCGTCTCGGTTTACGTCAACAGGTCAAGAAG
CCAACCCGGAAGGGAAAAACCTGCATTGACCATATCATTACCTCATTCTC
AAAAGTCATCCACGATGATGTTATCCCATGCGACGAAATGAGCGATCATG
ATGCTGCCTTCGTCATATCTAATCTACGCAAACCACGGTTTGAACCCAGa
tataaatttattcaaatgaGAAAAACTTTGATTTAGCAGCATTTAAAACA
GATATCAGACAAATACCGTTCAATCTTGTCTACGCTTTTGATACCGCTGA
AGAGAAACTAGACAtatttaacaaactttttacCGATTGTCTAGACCGAC
AN Run BLAST on NCBI protein sequence of TCONS_00071998-protein >TCONS_00071998-protein ID=TCONS_00071998-protein|Name=TCONS_00071998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MLLKHKFDILTISETWLVDNPALIRQLNFSGYHPFRYNNRNGKRGGGVGA
YFKDGIKHRPRTDIDKKDTTIEHQWFEVKGKKSPFLIAVFYQPSSEDVDK
RVWLQKFETLISYVHTIWSDPIVITGDTNIDLLKDNYNVADEYKDTLDRL
GLRQQVKKPTRKGKTCIDHIITSFSKVIHDDVIPCDEMSDHDAAFVISNL
RKPRFEPRYKFIQMRKTLI Run BLAST on NCBI transcript from alignment at scaffold_66:177714..179245- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071998 ID=TCONS_00071998|Name=TCONS_00071998|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at scaffold_66:177714..179245- (Clytia hemisphaerica)
TTAGTTTTTCTTAAAATTCTCACTCAAATTAAAAAGAAGTGAGCTGATTT
TTGCTAAAGAAGATGAAGGAAGCTGCGCTCGTCATAATGGTGTATCTCTT
TCTACATCAAATGGGAAGAAGCCACGAGAAATCGAGTTTTAAAGCTCAAA
ACAAAGACTTTTTGACTCGACGTCAAAATCACAACAACAAAAGGAGGTTT
TATGCACCGATCCATCTGTATGCAAATCATTCGGCAACATTTTGACTCCT
CGTCTCTGGTGACATTGAAACTAATCCGGGTCCGCTCGCGTGTCCTGTTT
GTGCCAAAACTGTCCGTAAGAATTCGTACCACTTGGAATGCAAGGTTTGT
CTCAACTCGACTCACGTAAAATGTATTTATAAAACTGTAAAAAACTTCTC
AGACAAACACAATTTATGGACATGTCACGACTGTCTGCTTACTGAATTAC
CGTTCAACAATGTCGATATAGACTTTCTACTATCAGACCCCTCGACCGTG
AATGATATCCCAGCGCAACAAGACACTCAAATCCAGTTGGATCTTCTAAA
TGCCAACCGAAACAACTACAACATTGCGCACCTTAACATTCAATCTATCA
AAAATAAGACTGCCCAACTTGAAGCCATGCTCCTAAAACACAAGTTCGAT
ATCCTAACAATCTCTGAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCTCTGAGAC
ATGGCTCGTTGACAATCCTGCACTCATCCGACAACTCAACTTCTCCGGTT
ATCATCCTTTCAGATACAATAACAGAAATGGCAAACGTGGCGGTGGCGTC
GGAGCTTACTTCAAAGACGGCATCAAACATCGCCCAAGAACTGACATTGA
CAAGAAAGATACAACGATCGAACACCAGTGGTTTGAAGTGAAGGGAAAGA
AAAGTCCCTTTCTTATAGCCGTCTTCTATCAACCAAGTTCCGAAGACGTT
GACAAACGTGTTTGGCTTCAAAAATTCGAAACATTAATATCGTACGTTCA
CACCATCTGGTCTGATCCAATCGTGATTACTGGTGATACAAATATCGATC
TCCTGAAAGATAACTACAACGTTGCTGACGAATATAAAGATACCCTCGAT
CGTCTCGGTTTACGTCAACAGGTCAAGAAGCCAACCCGGAAGGGAAAAAC
CTGCATTGACCATATCATTACCTCATTCTCAAAAGTCATCCACGATGATG
TTATCCCATGCGACGAAATGAGCGATCATGATGCTGCCTTCGTCATATCT
AATCTACGCAAACCACGGTTTGAACCCAGATATAAATTTATTCAAATGAG
AAAAACTTTGATTTAGCAGCATTTAAAACAGATATCAGACAAATACCGTT
CAATCTTGTCTACGCTTTTGATACCGCTGAAGAGAAACTAGACATATTTA
ACAAACTTTTTACCGATTGTCTAGACCGACAN Coding sequence (CDS) from alignment at scaffold_66:177714..179245- >TCONS_00071998 ID=TCONS_00071998|Name=TCONS_00071998|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_66:177714..179245- (Clytia hemisphaerica)
ATGGCTCGTTGACAATCCTGCACTCATCCGACAACTCAACTTCTCCGGTT
ATCATCCTTTCAGATACAATAACAGAAATGGCAAACGTGGCGGTGGCGTC
GGAGCTTACTTCAAAGACGGCATCAAACATCGCCCAAGAACTGACATTGA
CAAGAAAGATACAACGATCGAACACCAGTGGTTTGAAGTGAAGGGAAAGA
AAAGTCCCTTTCTTATAGCCGTCTTCTATCAACCAAGTTCCGAAGACGTT
GACAAACGTGTTTGGCTTCAAAAATTCGAAACATTAATATCGTACGTTCA
CACCATCTGGTCTGATCCAATCGTGATTACTGGTGATACAAATATCGATC
TCCTGAAAGATAACTACAACGTTGCTGACGAATATAAAGATACCCTCGAT
CGTCTCGGTTTACGTCAACAGGTCAAGAAGCCAACCCGGAAGGGAAAAAC
CTGCATTGACCATATCATTACCTCATTCTCAAAAGTCATCCACGATGATG
TTATCCCATGCGACGAAATGAGCGATCATGATGCTGCCTTCGTCATATCT
AATCTACGCAAACCACGGTTTGAACCCAGATATAAATTTATTCAAATGAG
AAAAACTTTGATTTAGATGCTCCTAAAACACAAGTTCGATATCCTAACAA
TCTCTGAGACATGGCTCGTTGACAATCCTGCACTCATCCGACAACTCAAC
TTCTCCGGTTATCATCCTTTCAGATACAATAACAGAAATGGCAAACGTGG
CGGTGGCGTCGGAGCTTACTTCAAAGACGGCATCAAACATCGCCCAAGAA
CTGACATTGACAAGAAAGATACAACGATCGAACACCAGTGGTTTGAAGTG
AAGGGAAAGAAAAGTCCCTTTCTTATAGCCGTCTTCTATCAACCAAGTTC
CGAAGACGTTGACAAACGTGTTTGGCTTCAAAAATTCGAAACATTAATAT
CGTACGTTCACACCATCTGGTCTGATCCAATCGTGATTACTGGTGATACA
AATATCGATCTCCTGAAAGATAACTACAACGTTGCTGACGAATATAAAGA
TACCCTCGATCGTCTCGGTTTACGTCAACAGGTCAAGAAGCCAACCCGGA
AGGGAAAAACCTGCATTGACCATATCATTACCTCATTCTCAAAAGTCATC
CACGATGATGTTATCCCATGCGACGAAATGAGCGATCATGATGCTGCCTT
CGTCATATCTAATCTACGCAAACCACGGTTTGAACCCAGATATAAATTTA
TTCAAATGAGAAAAACTTTGATTTAGATGCTCCTAAAACACAAGTTCGAT
ATCCTAACAATCTCTGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071998-exon-scaffold_66-1575043694:178576..179245 | TCONS_00071998-exon-scaffold_66-1575043694:178576..179245 | Clytia hemisphaerica | exon |
| TCONS_00071998-exon-scaffold_66-1575043694:177714..178445 | TCONS_00071998-exon-scaffold_66-1575043694:177714..178445 | Clytia hemisphaerica | exon |
| TCONS_00071998-exon-scaffold_66-1510915933:178576..179245 | TCONS_00071998-exon-scaffold_66-1510915933:178576..179245 | Clytia hemisphaerica | exon |
| TCONS_00071998-exon-scaffold_66-1510915933:177714..178445 | TCONS_00071998-exon-scaffold_66-1510915933:177714..178445 | Clytia hemisphaerica | exon |
| TCONS_00071998-exon-scaffold_66-1491911889:178576..179245 | TCONS_00071998-exon-scaffold_66-1491911889:178576..179245 | Clytia hemisphaerica | exon |
| TCONS_00071998-exon-scaffold_66-1491911889:177714..178445 | TCONS_00071998-exon-scaffold_66-1491911889:177714..178445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:177714..179245 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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