TCONS_00071999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071999
Unique NameTCONS_00071999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071999 ID=TCONS_00071999|Name=TCONS_00071999|organism=Clytia hemisphaerica|type=transcript|length=231bp
ttttttttcagatgtTCGATTGAAGTTTTTGACGATTTTAATGTTACTTG
TTGTGTTGATAAGcCTCGTTGCAGTTTTCCTGCGGTTTGGCTCGGCTGTT
TTGGAAGACAATTTTGTTGCCGATGTATCAACCAGATACAAAAACTCTGT
TGAGTTTTTAGCTTTCTATGGTCTTTTTAACTTGTACCTCTACACCATGG
CTTACATGTACACACCACTTTCAAGTAAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_66:179463..180168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071999 ID=TCONS_00071999|Name=TCONS_00071999|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at scaffold_66:179463..180168- (Clytia hemisphaerica)
TTTTTTTTCAGATGTTCGATTGAAGTTTTTGACGATTTTAATGTTACTTG
TTGTGTTGATAAGGTAAGGATTAAACAAACGTCTGAACATATGAATCAAT
AAATTCACATCTGAACTAAGATATCTTGGAAATTTTTTATGTCTTTCTTT
ATATCTGTTTTAATTTCTTCTTTTAGCCTCGTTGCAGTTTTCCTGCGGTT
TGGCTCGGCTGTTTTGGAAGACAATTTTGTTGCCGATGTATCAACCAGAT
ACAAAAACTATATCCTTTCAACACATAATCTTCTTTTCGTAACAAACATT
ATGATATCCTCCATTTCATAAATATCATACTTTATTACACGAATATTACT
AGGCAAGTATTCAACGGCCTTGAAATTAACACGCAAAAAACTAACACGAA
TTTTATTTGCTTTTTTAAGGACACCACGGTTGGTTTTAATTAAGAGGGTT
TTTATTAACACGAAATTTTTCAATTCATGTTAATAAAATGACTAGTAATA
TTGGTGTAATAAGGTATTAAGGGTTTATCTTTACTTTTACTGCATTTTAC
AAAACGATCACAGAAAGAGTTTTTGTATGGATATTTTGTTTTGTTTTGTT
TTTCCTTGACCACTTCAACACCTGTTGAGTTTTTAGCTTTCTATGGTCTT
TTTAACTTGTACCTCTACACCATGGCTTACATGTACACACCACTTTCAAG
TAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044699XLOC_044699Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071999-exon-scaffold_66-1575043694:180106..180168TCONS_00071999-exon-scaffold_66-1575043694:180106..180168Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1575043694:179910..179992TCONS_00071999-exon-scaffold_66-1575043694:179910..179992Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1575043694:179463..179547TCONS_00071999-exon-scaffold_66-1575043694:179463..179547Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1510915933:180106..180168TCONS_00071999-exon-scaffold_66-1510915933:180106..180168Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1510915933:179910..179992TCONS_00071999-exon-scaffold_66-1510915933:179910..179992Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1510915933:179463..179547TCONS_00071999-exon-scaffold_66-1510915933:179463..179547Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1491911889:180106..180168TCONS_00071999-exon-scaffold_66-1491911889:180106..180168Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1491911889:179910..179992TCONS_00071999-exon-scaffold_66-1491911889:179910..179992Clytia hemisphaericaexon
TCONS_00071999-exon-scaffold_66-1491911889:179463..179547TCONS_00071999-exon-scaffold_66-1491911889:179463..179547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_66supercontigscaffold_66:179463..180168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.16821	2.12759	0	1.15147	0	0	0	0	2.68109	0	2.10628	1.44996	0	4.30772	1.18051	1.9003	0	0	1.105	0	2.01007	1.47066	2.38371	4.33428	0	0	0	3.04233	1.15375	1.17549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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