|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072000 ID=TCONS_00072000|Name=TCONS_00072000|organism=Clytia hemisphaerica|type=transcript|length=1194bp
GCAAATTTGAATTGTCACAGTTTATTTGAACTCTATCATAGGAAACGAGA
AGTTCGATATAAGAATTAAAGAAAGTGTGGCGTAAAAAGCATCAAGTTTA
AGATGCAGCAGTTTCAACTACCAATTTCAGCCAATATGCATATCAGTAAC
GGCGAAACAAGAATACTGACAGGTACCGTTAGTGAAAATATCACTATGGG
TACAAATTCAACACTTATACTGCGGAATTGTACATTAAATGGCTCTATCA
ACAGTGATGAAAATATTACCATCAAAACAGAGGGTAGATTCTTTTTAAAC
GGCCCCATCAACGTCGGTGGTAATTTAACCATCATTGGTGATATAACAAT
AGGTGGGGGACAAGGCTCCTCACTATTCACACCTACAGTCAACGTCGGTG
GTAATTTAACCATCATTGGTGATTTAACAATGTGTGGAGGACAAGGCTCC
TCACTATTCACACCTACAGTCGACGTCGGTGGTAATTTAACCCACGGTGG
TGATTTAACAATGTGTGGAGGACAAGGCTCCTCACTATTCACACCTGGCG
ACTGGTTGATGACAGACGGTCCAAAATCATCTATTTATAAGCACCATTTT
ATCTATGTCGGAAGAGGTGAATTCGTCAGCCGCCAAACTAATGGCGTACA
ACTTGAAAAAGCGTCAGTTTATCAAGGTAAAAAATGTTGGCTTGTAAACC
GTGGAGGACAAGCGGCCGCCAGTAAAGCACGCGCTCGAGTTGGGGAAAGT
GGATATAACCTAGTTACCAACAACTGTGAGCATTTTTGCAGTGAAGTAAG
CGGCCTTGGACATCATTCCGAACAAGTTTTTGTTAGCACTGGAAAGGCTT
GTGTAACATTGGGAAGTGCTCTTGCCAACCATTTAGGACTTGGAGGATCG
AACGTCCGCTTCACGTCGAGCGTATCGGGTGGACTCACTTCGATGGGCGG
ATTTGGTGGCGGTATCAGCTTCTCTTTAAAGTGGGGGTGAATCTTTGGTG
AATCTTTGGTGAATCTCGTCGAGTGTAAGTCAAATACAAACGAAAATATG
AACTCTTTATACCGGTGAACGATAGGTGGAACTGAACATTTTACATATCT
TATATTTTACAAGTCTATATATACCTTTACATTTTCTTTaatcaaaacca
aaataaattttgtaatttaaaATACCGTAGTACTTTATTCAAAC Run BLAST on NCBI protein sequence of TCONS_00072000-protein >TCONS_00072000-protein ID=TCONS_00072000-protein|Name=TCONS_00072000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MQQFQLPISANMHISNGETRILTGTVSENITMGTNSTLILRNCTLNGSIN
SDENITIKTEGRFFLNGPINVGGNLTIIGDITIGGGQGSSLFTPTVNVGG
NLTIIGDLTMCGGQGSSLFTPTVDVGGNLTHGGDLTMCGGQGSSLFTPGD
WLMTDGPKSSIYKHHFIYVGRGEFVSRQTNGVQLEKASVYQGKKCWLVNR
GGQAAASKARARVGESGYNLVTNNCEHFCSEVSGLGHHSEQVFVSTGKAC
VTLGSALANHLGLGGSNVRFTSSVSGGLTSMGGFGGGISFSLKWG Run BLAST on NCBI transcript from alignment at scaffold_66:20539..21732 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072000 ID=TCONS_00072000|Name=TCONS_00072000|organism=Clytia hemisphaerica|type=transcript|length=1194bp|location=Sequence derived from alignment at scaffold_66:20539..21732 (Clytia hemisphaerica)
GTTTGAATAAAGTACTACGGTATtttaaattacaaaatttattttggttt
tgattAAAGAAAATGTAAAGGTATATATAGACTTGTAAAATATAAGATAT
GTAAAATGTTCAGTTCCACCTATCGTTCACCGGTATAAAGAGTTCATATT
TTCGTTTGTATTTGACTTACACTCGACGAGATTCACCAAAGATTCACCAA
AGATTCACCCCCACTTTAAAGAGAAGCTGATACCGCCACCAAATCCGCCC
ATCGAAGTGAGTCCACCCGATACGCTCGACGTGAAGCGGACGTTCGATCC
TCCAAGTCCTAAATGGTTGGCAAGAGCACTTCCCAATGTTACACAAGCCT
TTCCAGTGCTAACAAAAACTTGTTCGGAATGATGTCCAAGGCCGCTTACT
TCACTGCAAAAATGCTCACAGTTGTTGGTAACTAGGTTATATCCACTTTC
CCCAACTCGAGCGCGTGCTTTACTGGCGGCCGCTTGTCCTCCACGGTTTA
CAAGCCAACATTTTTTACCTTGATAAACTGACGCTTTTTCAAGTTGTACG
CCATTAGTTTGGCGGCTGACGAATTCACCTCTTCCGACATAGATAAAATG
GTGCTTATAAATAGATGATTTTGGACCGTCTGTCATCAACCAGTCGCCAG
GTGTGAATAGTGAGGAGCCTTGTCCTCCACACATTGTTAAATCACCACCG
TGGGTTAAATTACCACCGACGTCGACTGTAGGTGTGAATAGTGAGGAGCC
TTGTCCTCCACACATTGTTAAATCACCAATGATGGTTAAATTACCACCGA
CGTTGACTGTAGGTGTGAATAGTGAGGAGCCTTGTCCCCCACCTATTGTT
ATATCACCAATGATGGTTAAATTACCACCGACGTTGATGGGGCCGTTTAA
AAAGAATCTACCCTCTGTTTTGATGGTAATATTTTCATCACTGTTGATAG
AGCCATTTAATGTACAATTCCGCAGTATAAGTGTTGAATTTGTACCCATA
GTGATATTTTCACTAACGGTACCTGTCAGTATTCTTGTTTCGCCGTTACT
GATATGCATATTGGCTGAAATTGGTAGTTGAAACTGCTGCATCTTAAACT
TGATGCTTTTTACGCCACACTTTCTTTAATTCTTATATCGAACTTCTCGT
TTCCTATGATAGAGTTCAAATAAACTGTGACAATTCAAATTTGC Coding sequence (CDS) from alignment at scaffold_66:20539..21732 >TCONS_00072000 ID=TCONS_00072000|Name=TCONS_00072000|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_66:20539..21732 (Clytia hemisphaerica)
TCACCCCCACTTTAAAGAGAAGCTGATACCGCCACCAAATCCGCCCATCG
AAGTGAGTCCACCCGATACGCTCGACGTGAAGCGGACGTTCGATCCTCCA
AGTCCTAAATGGTTGGCAAGAGCACTTCCCAATGTTACACAAGCCTTTCC
AGTGCTAACAAAAACTTGTTCGGAATGATGTCCAAGGCCGCTTACTTCAC
TGCAAAAATGCTCACAGTTGTTGGTAACTAGGTTATATCCACTTTCCCCA
ACTCGAGCGCGTGCTTTACTGGCGGCCGCTTGTCCTCCACGGTTTACAAG
CCAACATTTTTTACCTTGATAAACTGACGCTTTTTCAAGTTGTACGCCAT
TAGTTTGGCGGCTGACGAATTCACCTCTTCCGACATAGATAAAATGGTGC
TTATAAATAGATGATTTTGGACCGTCTGTCATCAACCAGTCGCCAGGTGT
GAATAGTGAGGAGCCTTGTCCTCCACACATTGTTAAATCACCACCGTGGG
TTAAATTACCACCGACGTCGACTGTAGGTGTGAATAGTGAGGAGCCTTGT
CCTCCACACATTGTTAAATCACCAATGATGGTTAAATTACCACCGACGTT
GACTGTAGGTGTGAATAGTGAGGAGCCTTGTCCCCCACCTATTGTTATAT
CACCAATGATGGTTAAATTACCACCGACGTTGATGGGGCCGTTTAAAAAG
AATCTACCCTCTGTTTTGATGGTAATATTTTCATCACTGTTGATAGAGCC
ATTTAATGTACAATTCCGCAGTATAAGTGTTGAATTTGTACCCATAGTGA
TATTTTCACTAACGGTACCTGTCAGTATTCTTGTTTCGCCGTTACTGATA
TGCATATTGGCTGAAATTGGTAGTTGAAACTGCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072000-exon-scaffold_66-1491911889:20539..21732 | TCONS_00072000-exon-scaffold_66-1491911889:20539..21732 | Clytia hemisphaerica | exon |
| TCONS_00072000-exon-scaffold_66-1510915933:20539..21732 | TCONS_00072000-exon-scaffold_66-1510915933:20539..21732 | Clytia hemisphaerica | exon |
| TCONS_00072000-exon-scaffold_66-1575043694:20539..21732 | TCONS_00072000-exon-scaffold_66-1575043694:20539..21732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_66 | supercontig | scaffold_66:20539..21732 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007053 | LRAT-like_dom |
Blast
The following BLAST results are available for this feature:
|
