TCONS_00072080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072080
Unique NameTCONS_00072080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072080 ID=TCONS_00072080|Name=TCONS_00072080|organism=Clytia hemisphaerica|type=transcript|length=726bp
GCCATCAAGAGAGGAAGGCGTCCGACCCTAGCTGCTGGGAACAACGGACG
TTAAACCGtgcagtaagtaagtaagtaagtatcaTGTTGGTACACTTTCT
TTACACAATTTTTCACCATTGTGCAAAGTTTTTTCTCCATCAAAGATTCA
GTCTTTTTAACTGAAGGGATACCAATGATCTTAGCTGCACGACGTTCAAG
AGAAGCAAGCTTTGATTTTTGCCCCTCATTGAAGGTGGTTTTGATCGAGC
AACTATAAACNTGTCACTGGACACACAAACATGATCGATGTATGATTGGT
TGCCTAGAGATGTATGGTGGTAAGTGTAGCATGGACCCGCTCCTTGGGTC
ATATCTACTGGAGTGAGTTCATTTTCTGTTAGGAAATTTCCAAGACAGTT
GGAAAGAGCATTTTGTTTAGTAGTTCTGAATGTTCCTTCTATTGAAGGAC
ATGATTGAAAGTCTCCTATCATTATAATAGATGAATTGTCAATAAAATGG
CTGATGATACCCTTGATGGTATTCAATTGAGTTGTGTAAATGTTTTTATA
GTCACATGAATTGGAAACACATTGCAAGTAAACCCCAACAAAGAGAAGAG
AAGTTGGGTTGTTGGATCCCATGTGCACGTTGATGATTGAGGTGAAGTCT
TCTTGAATAATTAGTTCAGGGTTTGTGAATTTTGATCTCCTCAGAAGAAA
AACATTTCCTCCTGAGGGTCTTCCTG
Run BLAST on NCBI

protein sequence of TCONS_00072080-protein

>TCONS_00072080-protein ID=TCONS_00072080-protein|Name=TCONS_00072080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
GRPSGGNVFLLRRSKFTNPELIIQEDFTSIINVHMGSNNPTSLLFVGVYL
QCVSNSCDYKNIYTTQLNTIKGIISHFIDNSSIIMIGDFQSCPSIEGTFR
TTKQNALSNCLGNFLTENELTPVDMTQGAGPCYTYHHTSLGNQSYIDHVC
VSSDXFIVARSKPPSMRGKNQSLLLLNVVQLRSLVSLQLKRLNL
Run BLAST on NCBI

transcript from alignment at scaffold_70:15310..16035

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072080 ID=TCONS_00072080|Name=TCONS_00072080|organism=Clytia hemisphaerica|type=transcript|length=726bp|location=Sequence derived from alignment at scaffold_70:15310..16035 (Clytia hemisphaerica)
CAGGAAGACCCTCAGGAGGAAATGTTTTTCTTCTGAGGAGATCAAAATTC
ACAAACCCTGAACTAATTATTCAAGAAGACTTCACCTCAATCATCAACGT
GCACATGGGATCCAACAACCCAACTTCTCTTCTCTTTGTTGGGGTTTACT
TGCAATGTGTTTCCAATTCATGTGACTATAAAAACATTTACACAACTCAA
TTGAATACCATCAAGGGTATCATCAGCCATTTTATTGACAATTCATCTAT
TATAATGATAGGAGACTTTCAATCATGTCCTTCAATAGAAGGAACATTCA
GAACTACTAAACAAAATGCTCTTTCCAACTGTCTTGGAAATTTCCTAACA
GAAAATGAACTCACTCCAGTAGATATGACCCAAGGAGCGGGTCCATGCTA
CACTTACCACCATACATCTCTAGGCAACCAATCATACATCGATCATGTTT
GTGTGTCCAGTGACANGTTTATAGTTGCTCGATCAAAACCACCTTCAATG
AGGGGCAAAAATCAAAGCTTGCTTCTCTTGAACGTCGTGCAGCTAAGATC
ATTGGTATCCCTTCAGTTAAAAAGACTGAATCTTTGATGGAGAAAAAACT
TTGCACAATGGTGAAAAATTGTGTAAAGAAAGTGTACCAACAtgatactt
acttacttacttactgcaCGGTTTAACGTCCGTTGTTCCCAGCAGCTAGG
GTCGGACGCCTTCCTCTCTTGATGGC

Coding sequence (CDS) from alignment at scaffold_70:15310..16035

>TCONS_00072080 ID=TCONS_00072080|Name=TCONS_00072080|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_70:15310..16035 (Clytia hemisphaerica)
GGAAGACCCTCAGGAGGAAATGTTTTTCTTCTGAGGAGATCAAAATTCAC
AAACCCTGAACTAATTATTCAAGAAGACTTCACCTCAATCATCAACGTGC
ACATGGGATCCAACAACCCAACTTCTCTTCTCTTTGTTGGGGTTTACTTG
CAATGTGTTTCCAATTCATGTGACTATAAAAACATTTACACAACTCAATT
GAATACCATCAAGGGTATCATCAGCCATTTTATTGACAATTCATCTATTA
TAATGATAGGAGACTTTCAATCATGTCCTTCAATAGAAGGAACATTCAGA
ACTACTAAACAAAATGCTCTTTCCAACTGTCTTGGAAATTTCCTAACAGA
AAATGAACTCACTCCAGTAGATATGACCCAAGGAGCGGGTCCATGCTACA
CTTACCACCATACATCTCTAGGCAACCAATCATACATCGATCATGTTTGT
GTGTCCAGTGACANGTTTATAGTTGCTCGATCAAAACCACCTTCAATGAG
GGGCAAAAATCAAAGCTTGCTTCTCTTGAACGTCGTGCAGCTAAGATCAT
TGGTATCCCTTCAGTTAAAAAGACTGAATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044767XLOC_044767Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072080-proteinTCONS_00072080-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072080-exon-scaffold_70-1491911889:15310..16035TCONS_00072080-exon-scaffold_70-1491911889:15310..16035Clytia hemisphaericaexon
TCONS_00072080-exon-scaffold_70-1510915933:15310..16035TCONS_00072080-exon-scaffold_70-1510915933:15310..16035Clytia hemisphaericaexon
TCONS_00072080-exon-scaffold_70-1575043694:15310..16035TCONS_00072080-exon-scaffold_70-1575043694:15310..16035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:15310..16035 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0960092	0.162193	0	0.0760151	0	0.445218	0.107979	0.446408	0.29561	0.258303	0.498377	0.146638	0.303932	0.424624	0.299928	0.0482851	0.162873	0.179296	0	0.0763338	0.0829148	0.113892	0	0	0.377543	0.0890258	0.125281	0.130304	0.08865	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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