|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072084 ID=TCONS_00072084|Name=TCONS_00072084|organism=Clytia hemisphaerica|type=transcript|length=1737bp
GTGATCtgcaatcagggacaaaatacttggcacaaaagggaaattcaccg
ggNTATCACTAATGTTTTTTAATCTAGTATATTGTgagaaaatgatgaaa
agtttttattgttattgtttgcttattattttatttatttaaatttgaat
tattatttgtttgtccgccttttgttttctttatatATTAGATTTTTGTT
TCCTTAGATAATTATGCTTAGATTGATATTGCAACCTTTAGGTGTTCTca
ttgacctttatataccctggacaaagtttctcaatcccggcaaagcaaag
tctttttgaaagtAGTACCCTAAAGGtatgatgatgtagcgccgttagac
gttaatttttaacattgtaaTGGCTCCTTTGCGgttaccactttcaaaaa
aacttccatcaaagatggcggatatagctttgtccagggatatataaagg
tcagtaggTGTTCTGAAGAACATTTGTTTAGTTCAATTTCTTCAAATCAT
TTCAGTTTAAAAATTTGCACTATGTGATTTGAAtactacagttgactctc
tctaattcgattttcaagccggaccaagaattttcttcgaattagagaaa
gattcgaattagagagacttATTATATACTACTTTCTAGCTAAGGGGACG
Gatattttagtttgaattatagaaagactcgaatagtagaggttcgagtt
agagagagttgactgcgGTTACTTGGCAAAGATCTTTTTGCAAATGCACC
agtaatttttcattaatttgttACTAGATGAATTCTACTTCTACTTACTC
ACTTTAGGTTATAACACCACGCGTCATCATTACACTTGCCTCCAAAATTA
GCATTTTTATGAACCAAATTTTACTTAATATCAATATAGATGATAATTAA
AAGATAATATATTCATAATAAATatgtttagaatttttttgaaagctagT
TGAGAATATGTTATGGATAGAGATCTCCCATCTCCAGGGAAGGAGTTGAT
TTTGTAGGTAGGCAATTTACGTTTTTCTTAAATATGAAGCTAAGTTTTTC
TGAGACTAGGCATGCCATTGAAACAATGGCAATagatctattcatgatat
gcaccactgcaatgacttcacggaATTATGCAAcctttctgtttttgttc
cacccaaaaagtgacgtattgggtggaaaattctaaaatttctcataaga
ctctccagtggtgcatatcatgaattgttgcGAAGCCTGAACCACAGCTT
TCTTAAATGAATATAAGAGTTGCGTTTTTTTGCACTTTCTGTGATATTAA
AACTCTCCCGATAACCAGAGATATTAGAATTTTATGCCATAATATTTGAC
CCTTAGAGTTGAGACAACCAATTTTTTAAACCTAGTCCACGACAGTATTT
AGATTTAAATTGTTCTTGATCTCAAAATAAGAGACTCTAATTGAATGTTT
GGGATCTATTTATCAACGAAATTTAAAATGCTTGTGATCACTNTTGATCT
CAAAATAAGAGACTCTAATTAAACGTTTGGGATCTATTTatgaacaaaat
ttaaaatgctTGTGATCACTATATGCACGCTGCCTAACTaacaaaaatgt
aaattttatttgaaaaacaatttgaaataatataatcaactaaaaatatt
tattgattAGTCATCCTTCAACTTTATCTTTGGCCTTCTGCTATTTCTCA
TCAAATACATTTTCTTAGTTGCATAGACTACAATATT Run BLAST on NCBI transcript from alignment at scaffold_70:56741..58477 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072084 ID=TCONS_00072084|Name=TCONS_00072084|organism=Clytia hemisphaerica|type=transcript|length=1737bp|location=Sequence derived from alignment at scaffold_70:56741..58477 (Clytia hemisphaerica)
AATATTGTAGTCTATGCAACTAAGAAAATGTATTTGATGAGAAATAGCAG
AAGGCCAAAGATAAAGTTGAAGGATGACTaatcaataaatatttttagtt
gattatattatttcaaattgtttttcaaataaaatttacatttttgttAG
TTAGGCAGCGTGCATATAGTGATCACAagcattttaaattttgttcatAA
ATAGATCCCAAACGTTTAATTAGAGTCTCTTATTTTGAGATCAANAGTGA
TCACAAGCATTTTAAATTTCGTTGATAAATAGATCCCAAACATTCAATTA
GAGTCTCTTATTTTGAGATCAAGAACAATTTAAATCTAAATACTGTCGTG
GACTAGGTTTAAAAAATTGGTTGTCTCAACTCTAAGGGTCAAATATTATG
GCATAAAATTCTAATATCTCTGGTTATCGGGAGAGTTTTAATATCACAGA
AAGTGCAAAAAAACGCAACTCTTATATTCATTTAAGAAAGCTGTGGTTCA
GGCTTCgcaacaattcatgatatgcaccactggagagtcttatgagaaat
tttagaattttccacccaatacgtcactttttgggtggaacaaaaacaga
aaggTTGCATAATtccgtgaagtcattgcagtggtgcatatcatgaatag
atctATTGCCATTGTTTCAATGGCATGCCTAGTCTCAGAAAAACTTAGCT
TCATATTTAAGAAAAACGTAAATTGCCTACCTACAAAATCAACTCCTTCC
CTGGAGATGGGAGATCTCTATCCATAACATATTCTCAActagctttcaaa
aaaattctaaacatATTTATTATGAATATATTATCTTTTAATTATCATCT
ATATTGATATTAAGTAAAATTTGGTTCATAAAAATGCTAATTTTGGAGGC
AAGTGTAATGATGACGCGTGGTGTTATAACCTAAAGTGAGTAAGTAGAAG
TAGAATTCATCTAGTaacaaattaatgaaaaattactGGTGCATTTGCAA
AAAGATCTTTGCCAAGTAACcgcagtcaactctctctaactcgaacctct
actattcgagtctttctataattcaaactaaaatatCCGTCCCCTTAGCT
AGAAAGTAGTATATAATaagtctctctaattcgaatctttctctaattcg
aagaaaattcttggtccggcttgaaaatcgaattagagagagtcaactgt
agtaTTCAAATCACATAGTGCAAATTTTTAAACTGAAATGATTTGAAGAA
ATTGAACTAAACAAATGTTCTTCAGAACAcctactgacctttatatatcc
ctggacaaagctatatccgccatctttgatggaagtttttttgaaagtgg
taacCGCAAAGGAGCCAttacaatgttaaaaattaacgtctaacggcgct
acatcatcataCCTTTAGGGTACTactttcaaaaagactttgctttgccg
ggattgagaaactttgtccagggtatataaaggtcaatgAGAACACCTAA
AGGTTGCAATATCAATCTAAGCATAATTATCTAAGGAAACAAAAATCTAA
Tatataaagaaaacaaaaggcggacaaacaaataataattcaaatttaaa
taaataaaataataagcaaacaataacaataaaaacttttcatcattttc
tcACAATATACTAGATTAAAAAACATTAGTGATANcccggtgaatttccc
ttttgtgccaagtattttgtccctgattgcaGATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072084-exon-scaffold_70-1491911889:56741..58477 | TCONS_00072084-exon-scaffold_70-1491911889:56741..58477 | Clytia hemisphaerica | exon |
| TCONS_00072084-exon-scaffold_70-1510915933:56741..58477 | TCONS_00072084-exon-scaffold_70-1510915933:56741..58477 | Clytia hemisphaerica | exon |
| TCONS_00072084-exon-scaffold_70-1575043694:56741..58477 | TCONS_00072084-exon-scaffold_70-1575043694:56741..58477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_70 | supercontig | scaffold_70:56741..58477 . |
Blast
The following BLAST results are available for this feature:
|
