TCONS_00072090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072090
Unique NameTCONS_00072090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072090 ID=TCONS_00072090|Name=TCONS_00072090|organism=Clytia hemisphaerica|type=transcript|length=1935bp
AGGATTTATTCGATCAAAACAAACCTATCAGCGAATATTCAGAAGAACTG
CAAAAAAGTTTGGTTGAGATCTCCAATACAGAAGAAAAAGTGTTTGAAAA
TGTCTTGAACAACATCAATTTCTTCTTGTGGATGCGAGAATCTATGAAAG
GACCGCAAGAAGTAAAGACATTCGTGGATTTGGTGACCAACTCTGCCGGC
GAAAGTGATTATGAACATGATCGAATCTTGGATTTTGAATCAGTTTGTCA
AGCTTTCCGTCCAATCATTTTCAACGTTCGTCGAGAGGCTTCTTTTGGAG
ATTTACATATTGCTTGCAATGAAACGTCCATCCACACTAACACAGATATC
TTTTATAAACTGTCTGATTGTAAGAGAAACCTCGAGTGGTTCAAACATAT
GAAGCGTATCCAAGGTTCTGCGTCCACCAAGACATTCGAACAGATCAAAG
CCATCAACAAGAAAGGAGAATACACCATTGGTATTGCGCAACctgattat
gaaatgtttcttACTGAAGATATTGACATGAAAAAGGTTGTTCGATTGCA
ATTCACCTCCAAGAAGACTGGAACACGTGATTTGTTGTTGACAGAGATTG
AGGACCTGCAAAGTAGCTTGATGTTGTTGGGACGCGAAGCCAGAGGCGGG
GCCGAAAACCACGACGAAGCGGAGACGGAAAAGACAATCTTCGTTCAGCA
TACAGAATTAGCAATCCAACTTGGTACTTTGTATGTCGATTTGTGTCAAA
TGGGTGACGTGGCTTCCTTCAATTGGAACATTTCATTTCCGTGCAACATT
TACTCCACAACAGAAGGTGACCCAGAGAAGAAATCCAGGCAGCTGTACGA
AATTTATGCGGAGATCAAGAAAATGGAGGAGAGGCGAAACAAATTAAACA
GCTTGTTAGAAGTGCACACCAATTATCCAGCATTGAATTATTTCACCAAC
AAACAATGTCTTTTGTtgcagaaatatttttaccaacGAGATGGAAACCT
TCTATTGAACGTGATCGGACTTCTCCGGTTGACGCCTGGTCGAAAGAATA
TGACCATGAAGACTGCTCGCCAATTcattgatttcattttgaaaaatagt
gcAACTATTGACGATGAAAAAAGTATTGTGGATGTTGGAACGGCGCCTTT
CCAAAGTCTTTCTTTTGTCGGACGAGTTTTGAATGtTAACAAGGTGAACA
ATGCTTACTCCATCCCTTCCTACATCAACTGTAACAAACCAACCCTTGTC
TCACTTCCCAAAGATGAAGTGTTACAATTTGTTCTTGGAATGTATTTTGA
ATATAACGGTGAACTTCCGAATCAAGAAAACATTTTGGTTTGCACCAAAG
AAACAACATTAGAACAGgtCAAACTGTTGATGTTGAGAGTGGGTTATAAC
AAAGACGGGTTGTACTGTTTAGTATTTGCAGACTCTATGAATTACATCGC
TTGTGAGAAAGCTGTTGATTTCATGAATCAGATCATGCGTAATGGTAGAG
AGATGGGGAAATTTGTGTTCGTGTGCTGTACCGAGAACGAAAGCAAGTCG
AACTTGGTAGCCTCCTTGGATACGTACCGTACTCGAAAGTCATTGGAGTA
CACAGAGACCGAACAACGATTGAGGGATAAATTATGCATGAGAACAATTT
ATAAAACTCATTCAGGTCTCAATTTTGCTTCCAAAGCCGACGTAGAAGAT
TTCAACACACGTATCATTACGTCATCAGAAGGTGGCATGGGGAAATCTTT
ATACGTGGACGAACGCAAAGAAATCATGCTCTCTTCCTGTTATGGATTCA
CTTCTTCAGAAAAAGCTTCCAAAAACATATTGACCATTCGCGTTCAAGgc
ACTACGGTCGACGTGGTGGAGATAGTTGAACGCTTGCAAGAAATCAACTC
TCAACAAATGGATGATCATCCGAAGTTCTATCACT
Run BLAST on NCBI

transcript from alignment at scaffold_71:25980..40327+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072090 ID=TCONS_00072090|Name=TCONS_00072090|organism=Clytia hemisphaerica|type=transcript|length=14348bp|location=Sequence derived from alignment at scaffold_71:25980..40327+ (Clytia hemisphaerica)
AGGATTTATTCGATCAAAACAAACCTATCAGCGAATATTCAGAAGAACTG
CAAAAAAGTTTGGTTGAGATCTCCAATACAGAAGAAAAAGTGTTTGAAAA
TGTCTTGAACAACATCAATTTCTTCTTGTGGATGCGAGAATCTATGAAAG
GTTTGTCATTTTCTCTACCAGCCGAAGGTCattttgaaacaggggtgtca
CAATCAGCAACGTCATAGAGTTTTCGTATATGCTGTGGTCATCCCGTGCC
ATTTTCACTATTTCTCACTATTTTTTCTAAACTAATTGAAAATGAGAGGT
CTCAATCCAAGCAGTGCTATGTCAGCTATTTCACTACCCTAGGGTAGCAA
GAATCGTATTTACAAGCCTTTCTCatgaaatttagttttttctaccTCAG
GTGAACCCTTTTTTAGGATTCTATAAACAAGTCATTTTTcatatgttttt
gaaaaatggtcaTATCTTTATGAACAAAGAGTCTTTAAGCATAGAACTTT
CGGGAATTATTCCAAATTCATATGAGAATACCTCTGGAAAGTTTCAAGCG
ATTTCGACTTTGTGAAAGAGCTacgtcagatttttttaaattagtgGCGT
TTTTTATGCCATACCGGTATTATAATGGTAACATGTTCATACATCGATAT
TGTGTGTTAAACACATTTTGATACGAGTCCTGCTAAATAACACTTTAACC
GTTAAAATACATGTCCTGTCTGCTAATCACACATTGATGAGTCCTGAGAA
ATATTCCTTCCCTGCTTCAAAAATCTTATAAGCCTTGTTGGTGAATGTCA
GATATTcacgatatgcaccattgcaatgtctgctgacattacatcatgga
ccaaacagctgattggttgtaagtgacataaaatcagtcaattcatgata
tgcaccattgcaacgTCTTCTGGCgtattacatcacggacccaacagctg
attggttgtaagtgacgtaaaatcagtcaatacgtcactttcaaccaatc
agctgttgggtccgtggaagataGTGCAATGAATAAGCTACCTTTTCAGT
ATCCATGCTAATTATGATTCTTCAAGGACACAGGTTGCTGTCATCAAAAT
AGTTTTTATGAACTATATTATGTAATGAATCCATTGTTGTTACCCCATTA
TTTTTCCTCTTTCAGGACCGCAAGAAGTAAAGACATTCGTGGATTTGGTG
ACCAACTCTGCCGGCGAAAGTGATTATGAACATGATCGAATCTTGGATTT
TGAATCAGTTTGTCAAGCTTTCCGTCCAATCATTTTCAACGTTCGTCGAG
AGGCTTCTTTTGGAGATTTACATATTGCTTGCAATGAAACGTCCATCCAC
ACTAACACAGATATCTTTTATAAACTGGTAAGTTTCGTGTCTTTCCTGTA
ATCCCCGGGTGTTACAGGTTCTTTGAGAATCCCCACTGCGATATTGACTT
TTGTTTCACCCCCATTCACAATCCAATGAAAAaaactgcactccaaaacc
accccgattggaattttcgagcctggaacaatagaatttctatccccttt
CTATCCCTTTTTTATAGATGATTAATTTCATTCCCGCTGGCTATGGGATA
AAATTCCACCGGGGCGTTGTGTTAAACATTTCTTTTCTTCGTAAACAGTG
GTGAGTCCTTAGACGGTCATGAAATAAGGAAATCatcttttaaatgattt
tttattaaaaagtataGTGCTCTGAATTATCATTTGATATATTTGAAGAA
TTAGTTGAAGaatatcaagtaaaacaaaattcTGGGCTATTCTGGATAGT
CTGTATGTTGAGAAAGTGTGATCTTCAGGGTGGTTTGAAAATTTAGGgta
aatccagggtggtcagtaaaatgaggtcaaaaaatccagggtggtcctag
tctgaatcgcagacctctacaaaaccccaggagCACGATTCCgctagtgg
atgccagcagcctaggtaGGTCCAAataagaagagaaaaaaattcaaagg
ggtcctaaaaattgaaaaaaatctttccatctttaccaaaaaaaaaacct
caACATACGGGTTGCACATTTTTTCTGGATTAGCCTATTAAAATTATTAG
GATACATTACATTCCCTTTTTTCTATCTTTTAGTCTGATTGTAAGAGAAA
CCTCGAGTGGTTCAAACATATGAAGCGTATCCAAGGTTCTGCGTCCACCA
AGACATTCGAACAGATCAAAGCCATCAACAAGAAAGGAGAATACACCATT
GGTATTGCGCAACctgattatgaaatgtttcttACTGAAGATATTGACAT
GAAAAAGGTATAAAATTATTACAGTACACTCTCTGATGCTCtccaattca
attttcaagggcAATTGgcttttcatcgaataagggatcGTCTCGAATAG
TATAGTTTGATAGCCTCAACTGTACCCCCCCcagctcttttttcttttta
atactTGCCCTTTCAGCTCACTAACCCTTATGGTTCTTTCGCCTTAATTT
AGACCTAATTTCTCATTACTTCTATCTCGCATCTGTAGGTTGTTCGATTG
CAATTCACCTCCAAGAAGACTGGAACACGTGATTTGTTGTTGACAGAGAT
TGAGGACCTGCAAAGTAGCTTGATGTTGTTGGGACGCGAAGCCAGAGGCG
GGGCCGAAAACCACNcagctcttttttctttttaatactTGCCCTTTCAG
CTCACTAACCCTTATGGTTCTTTCGCCTTAATTTAGACCTAATTTCTCAT
TACTTCTATCTCGCATCTGTAGGTTGTTCGATTGCAATTCACCTCCAAGA
AGACTGGAACACGTGATTTGTTGTTGACAGAGATTGAGGACCTGCAAAGT
AGCTTGATGTTGTTGGGACGCGAAGCCAGAGGCGGGGCCGAAAACCACGA
CGAAGCGGAGACGGAAAAGACAATCTTCGTTCAGGTAAGGTTCATAAGCA
GTTGTTGTAATTAACTAAGAATTCATATTTTGTTTTCGCTTTACCGACGA
CTGTTAGGTTAACAGTggttaattcatgatattcttgACGTAATTTTTTC
TACGGAAACAATCCGGTTTTGCCAGCAGTGGCAGGtaaagaaaaattgtt
taaaatttgccactactgacAAAATCCGGGGTGTTCCCGtagaaaaaaat
tacgtcatgatCATGAATTCTTACTTCAGAGTGGCCAACTTTTGGTGTAA
TAATTGAAGTAGATGTACGCCTTTGAATaaatactaggtcacagtgtgga
tgtaaaccacactgaaacgaccgccttccatcacgctcgcgaaagagcgt
gCGCACATTATTAATGTCTACATGtaatctccagtacattttagattatt
cattgaaaacagattacaatgtagtcatttttcatgtctcgattattcaa
ttccgaataaaagacattcacggaaaaaaagagaaacacctgggtaatct
agtgaaaaaaaacgaaagtaaatggtagacaaagtaatgagccaaggcaa
aacgagattagcgtaccactatgaaagaaaccgcctccggcggtcgatta
aaactaggtcacagtgtggatctaaaccacactgaaacgaccgccttcca
tcacgcatcacgctcgcgaaagagcgcgagcacattattaacgcctacat
gtcatctccagtacattttagattattaattgaaaacagattacaatata
gtcattttttatgtctcgattattccattccgaataaaagacattcaggg
aaaaaaaaaagaaacacctgggtaatctagttaaaaaaaccgaaagtaaa
tggcagacaaagtaatgagccaaggcaaaacgagattagcgtaccactat
gaaagaaaccgcctccggcggtcgaaaaGTGCGATGCAATGTGAAACTTA
CCTTTATTAAAAGGACAATTTTCTTTATGGATTCTTAATTGAGAACTACA
GAAGACTCtcacttattcgaacttcttttattcgTCTAAATAAGTTTGAG
TTTATCGACCCAGTATTATTCATATTGGAaatttatcgtggcttggatca
cgagatttacctttggctacgtttcgagagattcttctcccatcatcggg
caatgtggaggatgttttcTCCACTATATGTAATAAGACCTTCTGATTAT
CCATAATTATCAATTTGTGAATCCCAATGTTACCATCATAGGTGTATAAG
AACTGTACTCTTTTTCATCACAGCATACAGAATTAGCAATCCAACTTGGT
ACTTTGTATGTCGATTTGTGTCAAATGGGTGACGTGGCTTCCTTCAATTG
GAACATTTCATTTCCGTGCAACATTTACTCCACAACAGAAGGTGACCCAG
AGAAGAAATCCAGGCAGCTGTACGAAATTTATGCGGAGATCAAGAAAATG
GAGGAGAGGCGAAACAAATTAAACAGCTTGTTAGAAGTGCACACCAATTA
TCCAGCATTGAATTATTTCACCAACAAACAATGTCTTTTGTtgcagaaat
atttttaccaacGAGATGGAAACCTTCTATTGAACGTGATCGGACTTCTC
CGGTTGACGCCTGGTCGAAAGAATATGACCATGAAGACTGCTCGCCAATT
cattgatttcattttgaaaaatagtgcAACTATTGACGATGAAAAAAGGT
CGGTGAatacactgacctttatatacccttgCAAAGTTTCTCAAttccgg
ccaagcaaaatcttttatcggagcactgacctttatatatccctggacca
agcttctcaattCCGGCAAGGCAAAATCTTTGttcagagttttttgaaaa
gtggtaccctaatggtagcactactcaatagtggtgtaaatgcatcgaga
gcgctagatctacttttccttgaatactttgatgatgtagcgccgttaaa
cgtttattttttaacattgcaacgtcttctttgcgggtaccactttcaaa
agaactccgatcaaagatggtagATATAGCTTTGTCGGATATATAAAAGT
CAGTGGTTTGATAACTTTTAAccgtttatttttctttcgattcttttatt
ttgatctgaaatttcgATATTTCAAAGATCtgtatacagttgacgctctt
caATTCGGCTTTTGAGGAAGGATCGGATTTTAATCGAAAGAGGTATCGAA
AAGTAGAGCATCGAAtaagagagtttcttgttgacgttGGCTTTCAATAA
TATCGAATAATGGATCGTATCTAATTGTAGAACGTTGATTGAGAGAGCGT
CAACTTTGCTTAGCCTATAAATCCAAGGCTAACTTTAAATTCgtaaatat
taaaaatctttaaagcgccgaaaacgctatattgccaaaAGCCGTGCGTC
CTAGCCTTGTAATTACCTGTGGCTAAACTTTACTTACATTTTTTTGTTAG
ACTTTCctcttttttagaattttttgaatGACTTTCTAATTTCAGTATTG
TGGATGTTGGAACGGCGCCTTTCCAAAGTCTTTCTTTTGTCGGACGAGTT
TTGAATGGTAAGTCatacaacattttcaaattatttcatcctTTTGAAGT
CAAGTTAAACTTGGCGTATCTCGGTAATTAAGACAAATAGCATCGTCTCT
TAGGGGACTCGAACTGAAATTGACCGTAAGCTGGAACCAACATATAGTCC
TCAAAATCGGACTCTTATAATAGGCCTATTCATAAATTacacgtcacgaa
catcacttgcctcgtatccaaacaattaccatggttatTATGTCCCTTgc
gaaaaaaatgattattttcatgaatagaaataaaatagttttaataaaat
ctactGGGAGTTagtcaccatggcaataatttcataACAatgcaagtgat
gttcgtggcgtaatttatgaaaaggtctatagagAGAAATCTTAGCTTCA
AATTTGAAGTGCGTTTGCAAAATTTTTGTGTCTTCCCAAATTTGAGTGCA
ACCGTCGACTTTTAAGCCTGAAAGCCTGTTACAAATTTTTTataaagcaa
ctccaatttttggGTCAGGCCTGCGCCTGCTTAGCATtgtagctcatttt
ctgaaaaattttcttctccCAATCCTGATATATCACCATATCTATGCTTT
TGGTCAAGGGCTGCCatggttagattatctaaaagaTCTTTTACTTAACG
AGATAGTGAAAAACTTCTTTAGTCAATCCTGCTCCCTGCTCCTTCATTAC
TGGGTCGGATAaaagattacacgttttttttttataagaacgtcaaaaat
tttcgaagccttcggatgttcttagctttttggatttgaagcctaaaaat
gttcttaaaaagttcttattttcagcattttttgagcattttgatgtaat
ttcttaagaaaatgcatgtttttaagtctccaaaccctaaaaatgttctt
agaatgttcttaaatttttgggcctcgaagccttatgttcttatatagtt
tgttcttattaaaaaaaaatgtgtatggtGTTACGTATTCTTTACAAATT
CTCACCATTCTttctaatttgattttttatagtTAACAAGGTGAACAATG
CTTACTCCATCCCTTCCTACATCAACTGTAACAAACCAACCCTTGTCTCA
CTTCCCAAAGGTATGATTGCAAATGGTCTtttccataaaatttccgtACA
AGGGGATTGACGaactttttcaagtcaaaactaatttcttggaaatgtgt
gtATACCTGCTAGAAAATGGCCGAATTTGCAAAGAAAACCTTTTCATGCC
TTAAAGTCtaggtggacgaactaaaatcattactttaccccctggaaaaa
taaaaaaaaacatttctctAGAAGTTCTAGGAATTCTTCTTCGATTACCC
TCGGAAATGTTCACCCACCCCCTGTATGATTATAAAATGGAATTTTCCAA
TGAACACGTCCAAATGAGTCAgattcttccgtctcagacggtTTTCCATC
TCAGTGAACTATATAAAGAGCCTTTTCCATCTCGAAATTCTGCTTCATTC
ATCAAAACTTTAAGAATATGTGCTAGTGCTACGTAAAATCCATTTCCCGC
TTCAGACGTAAAACCTGCCTTGACTATTGCTTAAAGATAGAATGATGCGG
TTCCCAGCtaacacacaacgttgttttaacgttaatctaatgttcacaac
gtctatataacgttagatgaacgttgtaacaacgttgtgtgtcagatGGG
TTAAGATACAAATGAAAAGGTCTAGAAAAAATACCGGCCCTGACTTTAAT
GCGTATGCAATCTTTAGTAAAAATTGATTCTCTGACGTAAAATGATAGAA
CTCTGAACACTTAAACCATGACCAACTGATAATTTTGTCCAATATAAGAG
AAAAGTCCgaaaaatttcaagatattCAAAGCAACAAAATGAAATAAGAT
ATTATAAAAAGCTATATTTCGTACATCATGATTTTATTGCCTATAATGGG
TCCATTTTattgttttagattttgaagCTTTTTAACTCGACATTTGTACA
AACAATTTTATTTGCCTGAATGATATGTATACGCTGATGTACGAAATATA
GCTTTTTATAACATCTTATTTCATGTTGCTGCTTTGAATATCTTGGCTCA
AATGAAATTTGTCGGACTTACTTCTCTCTTATACTCTGAAGACTTCTTTC
TTCCTTCATAGATGAAGTGTTACAATTTGTTCTTGGAATGTATTTTGAAT
ATAACGGTGAACTTCCGAATCAAGAAAACATTTTGGTTTGCACCAAAGAA
ACAACATTAGAACAGGTATGTTCAGTAGCATAGACAAGGGTGAAGCAACA
TTTGTTTAAGAGAGCATATTTAAAcgaaataccttatcggccccttttac
gccggcccttattacgccgcAGCCgtattttgggcttacgccaattagga
ctgttaataacgccaaaatttgtaacaatggctacttatgcttcaaatta
gtaaataatgactatCATtcacattaaaatgtcatttttcagtagtaaac
tatTGAAAATCCCATCGAAAATCATTGgtttttaaatatattaaatattt
aactcaagttttagatatggagtaaaacaatggataatttttgttttcga
atcatacctaaaatcttttaaattgagaaataatgataagaaattaacgc
cgcttttaggttaaaattacaaaatcttggccctttttacgccacgagcc
caaaagtAGCGCCAacaagggccggtgtaaaaaggacCGATAAGGTAGTA
ATTATGTTTTTATACCACGAATAGGTAACACCCCTGGGTACGCTACTGAT
GTTTATCAATTTATCCCGaactgaaaatgagattttgttGATCTTAAATA
GAACGACGGATGCCACCATAATTTGAGATATCAATTCTAGACCGcttgaa
aatctacaaaaaaaaaaaacaacaagggGTGGATACTTTGATGCTAGGAA
AAGGCCCTATTTTAGAGCAAACTTTTGTATATgctgtgttttcattttaa
cGTAAGTGTTCTAAGGGTTGTTGGTTTGGTCCCAGACCGCCAACTCAGTA
AATGAATAGCTTGGATAATCTGGGAGCTGAGGGTGGGTGTGGCATTTCAC
CTTAGCATTTATCTGCTCCCagatgaagaaattttcatccgaaacgctaa
agctctgaaggtcgggaaaattttcaacatctggaagggtTAGATTACTG
AATTTCGCCAAACTGCGTCAAGGATTTTCCAGCGGAAGGTTTGGATCCCA
ACCATCGTTTTAGGGGATTAgtgggtccaaccgaaatatatAAGACTTAC
ATACTCGgttagttgaacccgactggggatgtAGGCTCCTGGCATCCACT
AAAAAATTCGTACAGTTTTGtggaggtttttttttaatgaagatttacag
tccaggcacacaagggcctctaaaccgatctATCGTCTACAATTAAAAAG
ATCTTGATTCGTAGCGCAATGGATGTTCCATCCATGCCTTGGTTAGGTCT
TCTTTGAACGCTTTGATGCTAGTAGCGTTAACAGTCTCTTTTGGTAGCTG
GTTCCATGCTGTCACACATCGATAATAAAGAAGAATTGAGGGCgttgcga
ttcagactactgAGGATGCGGCACATTAAAGCCGACTATCATTTCTCTCA
GATGGGATATTGGcacgctcctttagagctttagcccTCCATCTTTCGGG
CCTAGCGCAGATAGAAAAAGGGATGGAGATTCCATCATCACTGCTTGATC
TGTCTACAGTACGCAGATGAATATACAGTAGTCTTTTTAACCCGAACTTC
tctaactcgaatgtctccttaactcggaGTGTCCTCATCCCTTCAGCTAA
CAATTCCATATAAATCAATCTCCATAATTCataatttccttaactcgaac
aaatttgtgttcctcgtggtgtttcgagttaaagagactccactttacag
ttaactctctctaattcgaacttcttcTATTAGAATCTTTCTTcaattcg
aactaaaattttGATCCCCTCAGCTAAGAAAGTAGTATAAagtactctct
ataattcgattaTTTCTCTAAATCGAAGAAAATTCCtggccccttgaaga
tcgaattagagagagtcaactgtactcACATTACTTActttaacattttt
ctttttacaggtCAAACTGTTGATGTTGAGAGTGGGTTATAACAAAGACG
GGTTGTACTGTTTAGTATTTGCAGACTCTATGAATTACATCGCTTGTGAG
AAAGCTGTTGATTTCATGAATCAGATCATGCGTAATGGTAAGTGAAAGAA
ATTGGCATTCCAAGAAAGTTTTGATCCATTTTATTACAagtgacgctctc
taatttgacgttctactattcgatacactcAATTATTCGATAATTTTGAA
ATTCACCATCAACAAGAAACACTCCTAAACAACGCTCAACTATTCGATAC
GCTTGTTTCTTCTTATTCGATGCAAATCCAATTCCCTGTTTAAATCGAAT
TAGAGATCGTTAACTCTACTTTCTTATAGTGCTAACATAAAAATATTGGA
GAAGTAGGAAAGTTCGATTATAGAGGGAAGGCTCAATTGCCTCATCACAT
GACGTTCGTCACGTTTGTACAATTTCGTCATCTAGAGATGATTGCTATTC
AGCTATCGAGTGTGCTTGCTGGTACACGGTCTCTAATTCGATTTGAAAGA
gggattggattttcatcgcATAAGTGTtgttttatgagagtttcttagtG
ACGATGACTTTCAATATTGTCAAATAATGGAGCGTACTGAATACTAGAAc
gaattagaaagcgtcaactgtacttattattgttaaaaagatatgaaact
tttctaagttaagtcaagaattttttgttttgttgttttaaaTTACAGGT
AGAGAGATGGGGAAATTTGTGTTCGTGTGCTGTACCGAGAACGAAAGCAA
GTCGAACTTGGTAGCCTCCTTGGATACGTACCGTACTCGAAAGTCATTGG
AGTACACAGAGACCGAACAACGATTGAGGGATAAATTATGCATGAGAACA
ATTTATAAAACTCATTCAGGTCTCAATTTTGCTTCCAAAGCCGACGTAGA
AGAGTAAGTGAATGCTAATATATGAATTTATTATCTAGTATCAAGCTAGC
ACAAATGGtcgttttaacgttcatctaatgtccACGTCCATTATGACGtt
tgatgaacgttgaaacaacactTTGTGTCAGCTGGGAAATTAACTTTTCA
AGGATTGGCTCGATCTTCCTAAGATAAATTTCATAATTCCCGTGTGAATT
ACAATAAATGAATTCCACAACCATTCTACTTCTCCGGTGAATTTTTTTAC
TCATCAGTACTGATCGTTACAAGGCGTCGTTTCTTCctaaatgaacttga
attgacaaagctcTGCTTCTTGAAAGGCCCGATGCTGGGCCGAACATAAA
TTATTCGTCCACGACTCCCGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatctagata
ttttgaccaaaaatgctagaattttgaccattttttgcacgaaagggatc
gaaaatttgggggaaaatgcactctaagggtatgattttcagtgattttt
gctgcactgtaagggtgcaattttaaaagccaatttttggcccgcacata
ccgtcagtcggcaaacccagtgccccccccgggccaCGACTCCGAGTGAA
CAATAATCAGTTCAAGTTGTAAATTTTGTCGTGTCTCGGACTAGCGAAAT
TGGTAAAGTAGGACCCATTCTTAAAACCTCTGAAACCAAAACTTAGAAAA
CTAAGTGAAATCATTCCTTTCACTAATCTCatcagatcatccattctgcg
cataccacgctctgctctaaagggatatggCGAATATGGCAATCTTACCT
GATTGTTCAGCCAATACAATCAAAACCGCGTTACTTCTGgcttgaaaacg
aaaatgaaagcAACTGGGTTTCTAATGTTTATGATTATGATTGGCTTTTG
ATTTTGATGCGATTGTTTAGCTTTAGCCAATCACCGatctcaaaagctca
tttaatattcatcccaaCTTTGAATGTAAAAGATTAAAGCGGTGCGCCAA
CCTGGGTAGACGATTGGTCATAGACTGTAGCATAGTCTAcaacctgggca
gattctcttacgtAGCCATGACCTTTAGAGTGAATGCCAGCGCGGAGTAt
tcagaatctgctcggagattatGCTTACCCAGGGtttaagacttttttta
actttctttctTGTCTAGATTTATTGTAAGATTCTCTTACGCAGCCACgg
cctttagagtgaatacgtgcCAGCGCGGAGTAttcagaatctgctcggag
attatGCTTACCCAGAGtttaagactttttttaactttctttctTGTCTA
GATTTATTGTAAGATTCTCTTACGCAGCCATGGTctttagagtgaatacg
tgcCAGCGTGGAGTAttcagaatctgctcggagattatGCTTCCCAAAGt
ttaagactttttttaactttctttctTGTCTAGATTTATTGTAAGATTCT
CTTACGCAGCCATAGCCTTTGGAGTGAATACGTGCCAGTGCGGAGTAttc
agaatctgctcggagattatGCTTACCCAAAGtttaagacttttttttaa
cttgCTTTCTTGTCTAGATTTATTGTAAGATTCTCTTACGCAGCCATAGC
CTTTAGAGTGAAAACGTGCCAGCGTGGAGTAttcagaatctgctcggaga
ttatGCTTACCCAGGGTTTAAGACTTAAAATTCTTTCTTGTCTAGATTTA
TTGTAAGATTCTCTTACGCAGCCAtggcctttagagtgaatacgtgcCAG
CGTGGAGTAttcagaatctgctcggagattatGCTTACCCAAAGTTTAAG
ACTTAAAATTCTTTCTTGTCTAGATTTATTGTAAGATTCTCTTACGCAGC
CATAgcctttagagtgaatacgtACCAGCGCGGAGTAttcagaatctgct
cggagattatGCTTACCCAAAGTTTAAGACTTAAAATTCTTTCTTGTCTA
GATTTATTGTAAGATTCTCTTACGCAGCCATAgcctttagagtgaatacg
tACCAGCGCGGAGTAttcagaatctgctcggagattatGCTTACCCAAAG
TTTAAGACTTAAAATTCTTTCTTGTCTAGATTTATTGTAAGATTCTCTTA
CGCAGCCAtggcctttagagtgaatacgtgcCAGCGTGGAGTAttcagaa
tctgctcggagattatGCTTACCCAAAGTTTAAGACTTAAAATTCTTTCT
TGTCTAGATTTATTGTAAGATTCTCTTACGCAGCCATAgcctttagagtg
aatacgtCCCAGCGCGGAGTATTCAGAATCTGCTCGGAAATTATGCTTAC
CCAAAGtttaagactttttttaactttctttctTGTCTAGATTTATTGta
agattctcttacggagtCATGGCCTTTAGAGTGAAAACGCGCCAGCGCGG
AGTAttcagaatctgctcggagattatGCTTACCCAGGGtttaagacttt
ttttaactttctttctTGTCTAGTTTCAACACACGTATCATTACGTCATC
AGAAGGTGGCATGGGGAAATCTTTATACGTGGACGAACGCAAAGAAATCA
TGCTCTCTTCCTGTTATGGATTCACTTCTTCAGAAAAAGCTTCCAAAAAC
ATATTGACCATTCGCGTTCAAGGTATTTTTAGCTTTTTACTGTACCCTgc
actggcggatttaagacgataagagcaagtacgtcggaaacatgcgaagg
agcgcaacgctcgttaaaagacaatgaaattacaattacaaatctcttct
tctgataagttcgacgtggtctaaaaccgcctttTCCTTGTCAAATTCGT
TCGAAAAGAAATTTACCATATATCAGTTCGGGAGATTACATAGAACCGTA
GCGCTGCGAATTTCCGCAACTGTAGCGTTGTTAAATTCCGCAACGCCCGA
CGTTTATCTTTGAAACTAAAACGGTATCGCAGGGTGACGAACGGGGCTGC
AAATAAGCTGCATGCACcctctctgatatgttttgatataggggatgcgt
atcgtgtataaaattcccgtccgagagttacacctgcctttgtttttttt
taatttggaaaCTTGATTATCTTAgttagaatttgaattaaaactTATAA
GGTTAATACAAATATTAGATTTCtgaactttttaatgaaaattgaaacag
gttaccccaaaatttggggtaactctcggacgggaattttatacacgata
tgcatcccctatatcaaaacacaTCAGAGCAGATGCTCGATAGGTCTCAA
AACCATgtgtattttgtaaaaaaaatgaactttttatcctttgtttatag
aaactttttttggtACTGAGCTACTCTCTATATACTCTGTGCAATAATTG
aatgttaaaaatataaattaattcgattgaaatatttttctcgttcttct
ttttattgaaggcACTACGGTCGACGTGGTGGAGATAGTTGAACGCTTGC
AAGAAATCAACTCTCAACAAATGGATGATCATCCGAAGTTCTATCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044777XLOC_044777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072090-exon-scaffold_71-1491911889:25980..26129TCONS_00072090-exon-scaffold_71-1491911889:25980..26129Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:25980..26129TCONS_00072090-exon-scaffold_71-1510915933:25980..26129Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:25980..26129TCONS_00072090-exon-scaffold_71-1575043694:25980..26129Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:27145..27356TCONS_00072090-exon-scaffold_71-1491911889:27145..27356Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:27145..27356TCONS_00072090-exon-scaffold_71-1510915933:27145..27356Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:27145..27356TCONS_00072090-exon-scaffold_71-1575043694:27145..27356Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:28113..28286TCONS_00072090-exon-scaffold_71-1491911889:28113..28286Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:28113..28286TCONS_00072090-exon-scaffold_71-1510915933:28113..28286Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:28113..28286TCONS_00072090-exon-scaffold_71-1575043694:28113..28286Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:28752..28913TCONS_00072090-exon-scaffold_71-1491911889:28752..28913Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:28752..28913TCONS_00072090-exon-scaffold_71-1510915933:28752..28913Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:28752..28913TCONS_00072090-exon-scaffold_71-1575043694:28752..28913Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:30203..30627TCONS_00072090-exon-scaffold_71-1491911889:30203..30627Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:30203..30627TCONS_00072090-exon-scaffold_71-1510915933:30203..30627Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:30203..30627TCONS_00072090-exon-scaffold_71-1575043694:30203..30627Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:31425..31486TCONS_00072090-exon-scaffold_71-1491911889:31425..31486Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:31425..31486TCONS_00072090-exon-scaffold_71-1510915933:31425..31486Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:31425..31486TCONS_00072090-exon-scaffold_71-1575043694:31425..31486Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:32512..32589TCONS_00072090-exon-scaffold_71-1491911889:32512..32589Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:32512..32589TCONS_00072090-exon-scaffold_71-1510915933:32512..32589Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:32512..32589TCONS_00072090-exon-scaffold_71-1575043694:32512..32589Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:33641..33744TCONS_00072090-exon-scaffold_71-1491911889:33641..33744Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:33641..33744TCONS_00072090-exon-scaffold_71-1510915933:33641..33744Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:33641..33744TCONS_00072090-exon-scaffold_71-1575043694:33641..33744Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:35640..35766TCONS_00072090-exon-scaffold_71-1491911889:35640..35766Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:35640..35766TCONS_00072090-exon-scaffold_71-1510915933:35640..35766Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:35640..35766TCONS_00072090-exon-scaffold_71-1575043694:35640..35766Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:36378..36582TCONS_00072090-exon-scaffold_71-1491911889:36378..36582Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:36378..36582TCONS_00072090-exon-scaffold_71-1510915933:36378..36582Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:36378..36582TCONS_00072090-exon-scaffold_71-1575043694:36378..36582Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:39303..39451TCONS_00072090-exon-scaffold_71-1491911889:39303..39451Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:39303..39451TCONS_00072090-exon-scaffold_71-1510915933:39303..39451Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:39303..39451TCONS_00072090-exon-scaffold_71-1575043694:39303..39451Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1491911889:40241..40327TCONS_00072090-exon-scaffold_71-1491911889:40241..40327Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1510915933:40241..40327TCONS_00072090-exon-scaffold_71-1510915933:40241..40327Clytia hemisphaericaexon
TCONS_00072090-exon-scaffold_71-1575043694:40241..40327TCONS_00072090-exon-scaffold_71-1575043694:40241..40327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:25980..40327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411098	0.390863	0.3491	0.273231	3.063	1.64282	0.858863	2.0287	1.16918	1.96314	1.85341	1.0404	6.08333	3.64859	1.37143	1.64085	1.82851	1.64484	2.99349	5.78479	2.36496	2.18107	0.824874	2.09981	9.65513	8.84348	4.01634	3.21852	1.51715	1.32492
Blast
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BLAST of TCONS_00072090 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.974e-16
Identity = 66/247 (26.72%), Postives = 114/247 (46.15%), Query Frame = 3 
Query:   45 ELQKSLVEISNTEEKVFENVLNNINFFLWMRESMKGPQEVKTFVDLVTNSAGESDYEHDRILDFESVCQAFRPIIFNVRREASFGDL--HIACNETSIHTNTDIFYKLSDCKRNLEWFKHMKRIQGSASTKTFEQIKAINKKGEYTIGIAQPDYEMFLTEDIDMKKVVRLQFTSKKTGTRDLLLTEIEDLQSSLMLL-GREARGGAENHDEAETEKTIFVQHTELAIQLGTLYVDLCQMGDVASFNW 776
            + +K L +IS    K  + +     F  W+RE++ G  E+K FVDL + SAGE+D + DR+  F    Q +  ++F +     F     H+     ++  +  +  KL D  RNLEW K +    GS    +     AIN++G Y   I  P     ++ D  +  ++     S +  +R+  L E+++L + LML+ G++ R    N+ E E    +F        +L   ++DL   G++    W
Sbjct: 1402 QAKKLLQDISEARCKGLQALSLRKEFICWVREALGGINELKVFVDLASISAGENDIDVDRVACFHDAVQGYASLLFKLDPSVDFSAFMKHLKKLWKALDKDQYLPRKLCDSARNLEWLKTVNESHGSVERSSLTLATAINQRGIYV--IQAPKGGQKISPDTVLHLILPESPGSHEE-SREYSLEEVKELLNKLMLMSGKKDR----NNTEVERFSEVFCS----VQRLSQAFIDLHSAGNMLFRTW 1637
The following BLAST results are available for this feature:
BLAST of TCONS_00072090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN2131.974e-1626.72E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens... [more]
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