TCONS_00072144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072144
Unique NameTCONS_00072144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072144 ID=TCONS_00072144|Name=TCONS_00072144|organism=Clytia hemisphaerica|type=transcript|length=1501bp
GGAACGGGTCTACAGTTGAAAGGAGGAGTTTTAAGGTTCAAGTTCTTCAC
TGAGCTTGTTATGAATTTAGGAAATAATACCGGTATATTCATTCTTTGAT
cagaaaaatataagaaaaacaaaactaaaacgTAATTATGAGGTCGAAGC
GTTATGACAACGAGTTATCAGAAGCTGTTCGTCAACACCCTTGTTTATAC
GACAGGTCATCGCCTTACTTCAACCATCGTGAATATGTTGCAAAGTGCTG
GGAAGTTGTAGCCACGACATCTCATCTCCCTGATGCTGAGACGGCACGAA
AAGCATTCGAGAATTTACGCAAAAGGTACAACAAAGTGAAAGGGCAATAC
CACGTCAAACATCCATTAGATGCCAAGGAGCGTTCAGAACTGGCTAAAGA
ATTGGCAGGTTATTCTTTCCTTACTTGGTTGGAACCTTTCATACATCGAA
GAAGAAGTCGAAACGTAGACGAGCATTTCAATGCAACGATGGTGGACCGA
GAATATCCTAGTAATTTCCTTGGTGGTGAAACAGTGGATGGTCATCACCA
AACACCATCGATGTACTCTGAACTGACGTCTAATGATGATGATTCTATTG
GTGAAATGGACGAGACAAGTAGAGATGGTACATTCCCAACCTTAGAGACT
TACAAGGATCACTACCAATCAACTCTGGCAGATGCCGAAGAAACCAAACC
TGATTTAACATCATCTGATTTACAGTATACCAGAAGTAACCATTCGACAT
TGACATCAGATATGCCGAGTATGTCATCAACACTGATGACAACTGAATCT
CGTTCTGGTGAAAACGAGGTCAGTACCACAAGTTTTCCTGGTAATCCTCC
AGTAATGACATCTAGAAAAGAGGAAACTTCATCATCCAGTACTTTAACAT
CGGGTATAAAGCTAATGAAAAGAAAGTTGAATACACACGAGAATGCCAGC
ATCCCTTCATCATCTGACAATGGCTATTTACCAAAGATTAATAGCTATAC
CAGTGTGGATAGATTACCTTTTACAgcaaaactaaagaaaaagaCTGACA
ATGACTTCTCGATTGACCGAAGACGCATGGTAACAGATTCACAAAGTCTG
GCAAGTGAGTCTACAATTTCAAATAGGTTTCAATCAGTTGATAAGATGGA
TGAGACGAACCTTTTTCTTcaattattaaaaacaaaacttgacaaacttt
cagcaaaatcgaaattgaaTTGTCAAAATGAAATGTTACAGtgtgttttg
aaatatgaattgAAACTGGTTGATTTGGCGACTGAACCACAATCTAATGA
TTAGGATCCGGACACTGACGGATTCCTCTTCATTTCGATATTACGTGACA
GTTTGCAGATGATTAGGCATTGAATATTCTGCTGTAAAATATTCCCTAAA
AGACTAagacctccttctcacagacccactgggaacctttcccactggaa
aaattggaaaaaattccgtccccattggaaaattgtactccaatttttgt
t
Run BLAST on NCBI

protein sequence of TCONS_00072144-protein

>TCONS_00072144-protein ID=TCONS_00072144-protein|Name=TCONS_00072144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MRSKRYDNELSEAVRQHPCLYDRSSPYFNHREYVAKCWEVVATTSHLPDA
ETARKAFENLRKRYNKVKGQYHVKHPLDAKERSELAKELAGYSFLTWLEP
FIHRRRSRNVDEHFNATMVDREYPSNFLGGETVDGHHQTPSMYSELTSND
DDSIGEMDETSRDGTFPTLETYKDHYQSTLADAEETKPDLTSSDLQYTRS
NHSTLTSDMPSMSSTLMTTESRSGENEVSTTSFPGNPPVMTSRKEETSSS
STLTSGIKLMKRKLNTHENASIPSSSDNGYLPKINSYTSVDRLPFTAKLK
KKTDNDFSIDRRRMVTDSQSLASESTISNRFQSVDKMDETNLFLQLLKTK
LDKLSAKSKLNCQNEMLQCVLKYELKLVDLATEPQSND
Run BLAST on NCBI

transcript from alignment at scaffold_71:108640..110724-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072144 ID=TCONS_00072144|Name=TCONS_00072144|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at scaffold_71:108640..110724- (Clytia hemisphaerica)
GGAACGGGTCTACAGTTGAAAGGAGGAGTTTTAAGGTTCAAGTTCTTCAC
TGAGCTTGTTATGAATTTAGGAAATAATACCGGTATATTCATTCTTTGAT
CAGAAAAATATAAGAAAAACAAAACTAAAACGTAATTATGAGGTCGAAGC
GTTATGACAACGAGTTATCAGAAGCTGTTCGTCAACACCCTTGTTTATAC
GACAGGTCATCGCCTTACTTCAACCATCGTGAATATGTTGCAAAGTGCTG
GGAAGTTGTAGCCACGACATCTCATCTCCCTGATGGTAACAAGGCTTACA
TTATTTTTTAATCAAAACTATAATTAAACTCTCCCTAATTCGAATATTCA
AATACAAATCAACGATAGTCTACTGAATGGATTAGGAATATTTAAATGTG
TAAGAAAAATAGAAAAACGTTAGACAAATTTTTGAAAAACTGACCTTTTT
GCTCAATAATGAACAGATTTTGAATAAATACGCATTACATAATTTATTTT
AAGCCCGCGGAAACGCATTTTAAAACGTATTTTTCAAATCGAGGGAGTGC
CTCCATAACCTATACTAGACGTCACCCGCGTTTGTTTTTTTTACGCAATT
AACGTCTAGTCCACTATTCGACTTTTTCGAATGTTTTGGGCCCGGTTTTT
CGAGCTCTAAATATTCTATTTCGAAGTTTCTGCAGTATCTAGCGAAAAAA
ATCAAATTTGCGTCAAAGCACTTGAAAATCGTCAAAGTAGAACTCACCAA
GAAACAGAATGAAAAATGAAAAATCCCGGTTTTTGGTGAGGTACTCGCTA
GTGCCTTCAGGGATTTGGTAACAGTGAAAGTAAACATTTGACACATATAA
CTCTCATTTTACTTTGTAGCTGAGACGGCACGAAAAGCATTCGAGAATTT
ACGCAAAAGGTACAACAAAGTGAAAGGGCAATACCACGTCAAACATCCAT
TAGATGCCAAGGAGCGTTCAGAACTGGCTAAAGAATTGGCAGGTTATTCT
TTCCTTACTTGGTTGGAACCTTTCATACATCGAAGAAGAAGTCGAAACGT
AGACGAGCATTTCAATGCAACGATGGTGGACCGAGAATATCCTAGTAATT
TCCTTGGTGGTGAAACAGTGGATGGTCATCACCAAACACCATCGATGTAC
TCTGAACTGACGTCTAATGATGATGATTCTATTGGTGAAATGGACGAGAC
AAGTAGAGATGGTACATTCCCAACCTTAGAGACTTACAAGGATCACTACC
AATCAACTCTGGCAGATGCCGAAGAAACCAAACCTGATTTAACATCATCT
GATTTACAGTATACCAGAAGTAACCATTCGACATTGACATCAGATATGCC
GAGTATGTCATCAACACTGATGACAACTGAATCTCGTTCTGGTGAAAACG
AGGTCAGTACCACAAGTTTTCCTGGTAATCCTCCAGTAATGACATCTAGA
AAAGAGGAAACTTCATCATCCAGTACTTTAACATCGGGTATAAAGCTAAT
GAAAAGAAAGTTGAATACACACGAGAATGCCAGCATCCCTTCATCATCTG
ACAATGGCTATTTACCAAAGATTAATAGCTATACCAGTGTGGATAGATTA
CCTTTTACAGCAAAACTAAAGAAAAAGACTGACAATGACTTCTCGATTGA
CCGAAGACGCATGGTAACAGATTCACAAAGTCTGGCAAGTGAGTCTACAA
TTTCAAATAGGTTTCAATCAGTTGATAAGATGGATGAGACGAACCTTTTT
CTTCAATTATTAAAAACAAAACTTGACAAACTTTCAGCAAAATCGAAATT
GAATTGTCAAAATGAAATGTTACAGTGTGTTTTGAAATATGAATTGAAAC
TGGTTGATTTGGCGACTGAACCACAATCTAATGATTAGGATCCGGACACT
GACGGATTCCTCTTCATTTCGATATTACGTGACAGTTTGCAGATGATTAG
GCATTGAATATTCTGCTGTAAAATATTCCCTAAAAGACTAAGACCTCCTT
CTCACAGACCCACTGGGAACCTTTCCCACTGGAAAAATTGGAAAAAATTC
CGTCCCCATTGGAAAATTGTACTCCAATTTTTGTT

Coding sequence (CDS) from alignment at scaffold_71:108640..110724-

>TCONS_00072144 ID=TCONS_00072144|Name=TCONS_00072144|organism=Clytia hemisphaerica|type=CDS|length=2334bp|location=Sequence derived from alignment at scaffold_71:108640..110724- (Clytia hemisphaerica)
CTGAGACGGCACGAAAAGCATTCGAGAATTTACGCAAAAGGTACAACAAA
GTGAAAGGGCAATACCACGTCAAACATCCATTAGATGCCAAGGAGCGTTC
AGAACTGGCTAAAGAATTGGCAGGTTATTCTTTCCTTACTTGGTTGGAAC
CTTTCATACATCGAAGAAGAAGTCGAAACGTAGACGAGCATTTCAATGCA
ACGATGGTGGACCGAGAATATCCTAGTAATTTCCTTGGTGGTGAAACAGT
GGATGGTCATCACCAAACACCATCGATGTACTCTGAACTGACGTCTAATG
ATGATGATTCTATTGGTGAAATGGACGAGACAAGTAGAGATGGTACATTC
CCAACCTTAGAGACTTACAAGGATCACTACCAATCAACTCTGGCAGATGC
CGAAGAAACCAAACCTGATTTAACATCATCTGATTTACAGTATACCAGAA
GTAACCATTCGACATTGACATCAGATATGCCGAGTATGTCATCAACACTG
ATGACAACTGAATCTCGTTCTGGTGAAAACGAGGTCAGTACCACAAGTTT
TCCTGGTAATCCTCCAGTAATGACATCTAGAAAAGAGGAAACTTCATCAT
CCAGTACTTTAACATCGGGTATAAAGCTAATGAAAAGAAAGTTGAATACA
CACGAGAATGCCAGCATCCCTTCATCATCTGACAATGGCTATTTACCAAA
GATTAATAGCTATACCAGTGTGGATAGATTACCTTTTACAGCAAAACTAA
AGAAAAAGACTGACAATGACTTCTCGATTGACCGAAGACGCATGGTAACA
GATTCACAAAGTCTGGCAAGTGAGTCTACAATTTCAAATAGGTTTCAATC
AGTTGATAAGATGGATGAGACGAACCTTTTTCTTCAATTATTAAAAACAA
AACTTGACAAACTTTCAGCAAAATCGAAATTGAATTGTCAAAATGAAATG
TTACAGTGTGTTTTGAAATATGAATTGAAACTGGTTGATTTGGCGACTGA
ACCACAATCTAATGATTAGATGAGGTCGAAGCGTTATGACAACGAGTTAT
CAGAAGCTGTTCGTCAACACCCTTGTTTATACGACAGGTCATCGCCTTAC
TTCAACCATCGTGAATATGTTGCAAAGTGCTGGGAAGTTGTAGCCACGAC
ATCTCATCTCCCTGATGCTGAGACGGCACGAAAAGCATTCGAGAATTTAC
GCAAAAGGTACAACAAAGTGAAAGGGCAATACCACGTCAAACATCCATTA
GATGCCAAGGAGCGTTCAGAACTGGCTAAAGAATTGGCAGGTTATTCTTT
CCTTACTTGGTTGGAACCTTTCATACATCGAAGAAGAAGTCGAAACGTAG
ACGAGCATTTCAATGCAACGATGGTGGACCGAGAATATCCTAGTAATTTC
CTTGGTGGTGAAACAGTGGATGGTCATCACCAAACACCATCGATGTACTC
TGAACTGACGTCTAATGATGATGATTCTATTGGTGAAATGGACGAGACAA
GTAGAGATGGTACATTCCCAACCTTAGAGACTTACAAGGATCACTACCAA
TCAACTCTGGCAGATGCCGAAGAAACCAAACCTGATTTAACATCATCTGA
TTTACAGTATACCAGAAGTAACCATTCGACATTGACATCAGATATGCCGA
GTATGTCATCAACACTGATGACAACTGAATCTCGTTCTGGTGAAAACGAG
GTCAGTACCACAAGTTTTCCTGGTAATCCTCCAGTAATGACATCTAGAAA
AGAGGAAACTTCATCATCCAGTACTTTAACATCGGGTATAAAGCTAATGA
AAAGAAAGTTGAATACACACGAGAATGCCAGCATCCCTTCATCATCTGAC
AATGGCTATTTACCAAAGATTAATAGCTATACCAGTGTGGATAGATTACC
TTTTACAGCAAAACTAAAGAAAAAGACTGACAATGACTTCTCGATTGACC
GAAGACGCATGGTAACAGATTCACAAAGTCTGGCAAGTGAGTCTACAATT
TCAAATAGGTTTCAATCAGTTGATAAGATGGATGAGACGAACCTTTTTCT
TCAATTATTAAAAACAAAACTTGACAAACTTTCAGCAAAATCGAAATTGA
ATTGTCAAAATGAAATGTTACAGTGTGTTTTGAAATATGAATTGAAACTG
GTTGATTTGGCGACTGAACCACAATCTAATGATTAGATGAGGTCGAAGCG
TTATGACAACGAGTTATCAGAAGCTGTTCGTCAACACCCTTGTTTATACG
ACAGGTCATCGCCTTACTTCAACCATCGTGAATATGTTGCAAAGTGCTGG
GAAGTTGTAGCCACGACATCTCATCTCCCTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044804XLOC_044804Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072144-proteinTCONS_00072144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072144-exon-scaffold_71-1575043694:110440..110724TCONS_00072144-exon-scaffold_71-1575043694:110440..110724Clytia hemisphaericaexon
TCONS_00072144-exon-scaffold_71-1575043694:108640..109855TCONS_00072144-exon-scaffold_71-1575043694:108640..109855Clytia hemisphaericaexon
TCONS_00072144-exon-scaffold_71-1510915933:110440..110724TCONS_00072144-exon-scaffold_71-1510915933:110440..110724Clytia hemisphaericaexon
TCONS_00072144-exon-scaffold_71-1510915933:108640..109855TCONS_00072144-exon-scaffold_71-1510915933:108640..109855Clytia hemisphaericaexon
TCONS_00072144-exon-scaffold_71-1491911889:110440..110724TCONS_00072144-exon-scaffold_71-1491911889:110440..110724Clytia hemisphaericaexon
TCONS_00072144-exon-scaffold_71-1491911889:108640..109855TCONS_00072144-exon-scaffold_71-1491911889:108640..109855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:108640..110724 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.7367	9.80052	5.03676	3.0722	3.99932	3.45294	9.46136	9.41948	3.00815	4.35665	1.83613	2.23112	2.42891	2.75004	2.0582	4.0996	3.95785	3.14814	0.817323	1.008	1.96466	1.65671	11.8358	9.9898	0.972909	1.42085	1.16723	1.36625	5.78229	6.92241
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006578MADF-dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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