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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072182 ID=TCONS_00072182|Name=TCONS_00072182|organism=Clytia hemisphaerica|type=transcript|length=2798bpRun BLAST on NCBI transcript from alignment at scaffold_71:541871..557703- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072182 ID=TCONS_00072182|Name=TCONS_00072182|organism=Clytia hemisphaerica|type=transcript|length=15833bp|location=Sequence derived from alignment at scaffold_71:541871..557703- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00072182 vs. Swiss-Prot (Human)
Match: RN213 (E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1 SV=3) HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0 Identity = 417/919 (45.38%), Postives = 557/919 (60.61%), Query Frame = 1
Query: 73 LQNLPHTECASPEEALRIRRG------QPAKMIFEESELRSSQFQRVFQYLQRYEANPKSLNDFDYEQNKNIQINVVSVLEVLLRYCGIPDPSWMELRNFVHFFNQNLLDCERSVFTSVYLRAD-FPGFRTFVVTFLLEMARDFATRSLDQNDRNSNNNLV-------------QFKRTWEQSAHPYLFFNTDGNSMTFFGINITPNFDLIDPQTXXXXXXXXXXXXXXXXXDRQMAGDFVNFKTNFNSLSKLNKIKVLCRVMGLPETDFDPDPTYELTIDNMKKMLAIHMRLRCGVPVVLMGETGCGKTTLIRFMCSLCAGPAAGNQRTPKNMLLVKVHGGITMEDIELRVKKAMEMASQNLNSH---TVLFLDEANTTDAIGLIKEVMVDKMLFGKPLAIAQYGLDIIAACNPYRQHTNEMIKKLETAGLGYHVGAVDTYEKIGEIPLRQLVYRVHPLPESMKPLVWDFGQLNSETEQLYARQIVKRYKADGKLPLNDDFVDLLIKVLAESQLFMRNQKDECSFVSLRDVERAVQVTSWFHQKMGLFLPLIKEFEEDRGIPLNLQTRLQESIEKQRRSLILALAVCYIARLEDRNDYYDYIEKLFTGDFALQGGVEQFKNEIKRFQEMFINQLHLEDNIAKNQALCENVFMMVICIELRIPLFVVGKPGSSKSLAKTIVQDNMQGKNSKCKLFQNFKQVFMSSYQCSPLSTADGIIGVFKQSARFQEQKNLDEYTSVVVLDEVGLAEDSPRMPLKALHPLLEDGTDGSEDLTMTGSDSKSKRVAFIGISNWALDPAKMNRGIMLSRSPPAFDELANTARDICASKASIQNKISPLLKQLSHGYIGIYKVQRKTESLKQFKKEEFFGLRDFYSLIKLVFCLAKKYDGKPPTSEIKNAICRNFSGMNEIEPWPIFKKSL 2760
L P C P+E + + +P ++E S FQR +QYL+R+ N + L+ F Y Q +++ L+ L +CG+ +PSW ELRNF F N L DCE S+F + D GF+ FVVTF++ MARDFAT SL +D++ ++V ++ WE HPY+FFN D +MTF G ++ PN + + + I + + L + + V F +F+ L + K++ LC +G+P+ DPD TYELT DNM K+LAI MR RCG+PV++MGETGCGKT LI+F+ L G N T K LVKVHGG T + I RV++A +A N + H T+LF DEANTT+AI IKEV+ D M+ G+PLA GL IIAACNPYR+H+ EMI +LE+AGLGY V +T +++G IPLRQLVYRVH LP S+ PLVWDFGQL+ E+LY +QIV+R + L+++ ++ +VL SQ FMR +DECSFVSLRDVER V+V WFH+ + L + F + N R + SL+LA+ VCY A LE ++ Y I + F + +EI R Q++F++ + L IAKN AL ENVFMMV+CIEL+IPLF+VGKPGSSKSLAKTIV D MQG + LF++ KQV + S+QCSP ST GII F+Q ARFQ+ K+L +Y SVVVLDEVGLAEDSP+MPLK LHPLLEDG + + K+V F+GISNWALDPAKMNRGI +SR P EL +A+ IC+S +Q+++ + Y + K Q K EFFGLRD+YSLIK+VF AK + KP +I A+ RNFSG ++I+ IF +L
Sbjct: 2124 LDIFPKVTCRPPKEVIDMELSALRSDTEPGMDLWE---FCSETFQRPYQYLRRFNQN-QDLDTFQY-QEGSVEGTPEECLQHFLFHCGVINPSWSELRNFARFLNYQLRDCEASLFCNPSFIGDTLRGFKKFVVTFMIFMARDFATPSLHTSDQSPGKHMVTMDGVREEDLAPFSLRKRWESEPHPYVFFNDDHTTMTFIGFHLQPNINGSVDAISHLTGKVIKRDVMTRDLYQGLLLQRVPFNVDFDKLPRHKKLERLCLTLGIPQAT-DPDKTYELTTDNMLKILAIEMRFRCGIPVIIMGETGCGKTRLIKFLSDLRRG--GTNADTIK---LVKVHGGTTADMIYSRVREAENVAFANKDQHQLDTILFFDEANTTEAISCIKEVLCDHMVDGQPLA-EDSGLHIIAACNPYRKHSEEMICRLESAGLGYRVSMEETADRLGSIPLRQLVYRVHALPPSLIPLVWDFGQLSDVAEKLYIQQIVQRLVES--ISLDENGTRVITEVLCASQGFMRKTEDECSFVSLRDVERCVKVFRWFHEHSAMLLAQLNAFLSKSSVSKNHTER-----DPVLWSLMLAIGVCYHASLEKKDSYRKAIARFFPKPY---DDSRLLLDEITRAQDLFLDGVPLRKTIAKNLALKENVFMMVVCIELKIPLFLVGKPGSSKSLAKTIVADAMQGPAAYSDLFRSLKQVHLVSFQCSPHSTPQGIISTFRQCARFQQGKDLQQYVSVVVLDEVGLAEDSPKMPLKTLHPLLEDG-------CIEDDPAPHKKVGFVGISNWALDPAKMNRGIFVSRGSPNETELIESAKGICSSDILVQDRVQGYFASFAKAYETVCKRQDK----------EFFGLRDYYSLIKMVFAAAKASNRKPSPQDIAQAVLRNFSGKDDIQALDIFLANL 3003 The following BLAST results are available for this feature:
BLAST of TCONS_00072182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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