TCONS_00072236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072236
Unique NameTCONS_00072236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072236 ID=TCONS_00072236|Name=TCONS_00072236|organism=Clytia hemisphaerica|type=transcript|length=381bp
CTTGGTGTTGTGGATTTCCTTGTTGTTGTTCCTGGACATCCCTTTGTATC
TGTATTGGGATAAAAGGATTTTCATCCTCAGTATCTTGTCTTAATATATT
GTCGAGTTCCTGGTCTTCTACCGAGATTAGATCGTTTCTGCTTCTTGTTC
TTCTCGTGATAGTCTCTGaagcattttgaagttttcttcTCCTGTTTGGT
GCCATAAtgcttttgattttcttaaacATCCTCCTTTCTAGAATACGACT
TGAACAGGTTTGAACGACGTGTGATGTACTCCTtgaaatctaccattttt
atgaCCACGCAGAAAGTCCGAAAAGCtataatttacagaacgataaAATT
CCCGAATACGAAAAACCGCCCAGTCTAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_71:317123..317503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072236 ID=TCONS_00072236|Name=TCONS_00072236|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_71:317123..317503 (Clytia hemisphaerica)
TTTTTAGACTGGGCGGTTTTTCGTATTCGGGAATTttatcgttctgtaaa
ttataGCTTTTCGGACTTTCTGCGTGGtcataaaaatggtagatttcaAG
GAGTACATCACACGTCGTTCAAACCTGTTCAAGTCGTATTCTAGAAAGGA
GGATgtttaagaaaatcaaaagcaTTATGGCACCAAACAGGAgaagaaaa
cttcaaaatgcttCAGAGACTATCACGAGAAGAACAAGAAGCAGAAACGA
TCTAATCTCGGTAGAAGACCAGGAACTCGACAATATATTAAGACAAGATA
CTGAGGATGAAAATCCTTTTATCCCAATACAGATACAAAGGGATGTCCAG
GAACAACAACAAGGAAATCCACAACACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044848XLOC_044848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072236-exon-scaffold_71-1491911889:317123..317503TCONS_00072236-exon-scaffold_71-1491911889:317123..317503Clytia hemisphaericaexon
TCONS_00072236-exon-scaffold_71-1510915933:317123..317503TCONS_00072236-exon-scaffold_71-1510915933:317123..317503Clytia hemisphaericaexon
TCONS_00072236-exon-scaffold_71-1575043694:317123..317503TCONS_00072236-exon-scaffold_71-1575043694:317123..317503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:317123..317503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.412532	0.201142	0.46709	0	0.278161	0	0.530375	0.49653	0.347633	0.2153	0	0	0.411543	1.70957	0.234249	0	0	0.158709	0	0	0	0.291824	0	0	0	0	0.282832	0.301845	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top