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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072354 ID=TCONS_00072354|Name=TCONS_00072354|organism=Clytia hemisphaerica|type=transcript|length=2714bp
CGATAATCGATGATCTAACTCAATctcattataaaaacattttctcctGT
TTGAATTTTCTTCTACTTCAAATCATTAATACAAGGATAGGAAACAAACA
ATATTTCGCCAAAACTTCGTTTTACAGAGACACCACATGGACAGCGAATG
TTGAAAGAATCGATCATTAACTCTCATCGATATAAACCTACAACACCACC
CTAACAACATCGACTGATTACTTCACATCAAAAGATCGCTCAGCGTTCGA
GGAAAAACAAGCTGTGTATTTTGCGCAACACCACAGCACTGACCGTGTTG
ATCATATAAAAACTGTAAACAAACTACATCATTCGCTGGCAACATCCGAT
CATAGAAGGTCATCTCAAGATGCGTACTTTAAAACAACTCCTAGTTTTGA
TCGTTCTTGTTTTGCACAAATCACAAAATGTCTTGGCGAGCTCCAACACA
ACCTTCAACAACCAGACGACGGTTGTCGGCAACAACGCGACCTTACCTAG
CAACAACACTGACTCCATCTTATCAAACGAGACGGAGTACCTGATGGATG
TGGTGTATTGGGAACAGAAACCGTTTCTTTTTTACAACGAGGAAAAACAA
GAGATGGACGGTATCATCCCTCAAATGTTTTCACAAGCAGACGAATTTTG
CATCACCCAGAAAAACCGTAAAATTAACCACTACAAACGTCGCATGCCAA
GTCGCAAAGCCTTCTTCGATCTCGCCCGCGCAGTAAACACGTCATATGGA
GAGGGCGATCTTGAAGGAATTCGCGCTGACCGCTCGTTTTGGGTTTCAGT
GCTGGCGTACGCCGATCGCAACGAAGATAAGTTTAAGAAGAACCGAAAAT
TGAGGGCTTTCCAACTGATGACATCGAACGAGATTGCGGTCATTGTCCGT
CGTGAGATGATCTCCCTACCAAACAAAATCATCCGAGGTATATTGAGTTG
TGAACAAATTTTCTTCCTCGCTATCTTGATGGCTGTTTTGTTCGGCCTTG
TTTTGTGGATGATCGAACGATACCAAAACGAGGATTTCCCAGAATCCTTC
ATTCGTGGTATCGGCAGCGGTTTGTATTGGTCTATCGTTTCCATGACGAC
GGTAGGGTACGGAGATATCACCCCAAAAAATCCAATCGGGCGATTTATCG
CGTGTATTTGGTTATTCGTGGGCGTAATGGTGGGATGTATCGTGGTGGCC
ACTATGACGGACGTCGTGACGGGCGTAGGTGATTTGAATGTGTATGGACA
AAAGGTGGCTGTACTGGAGCATTCTTATGAAGCAAAGACCGCAGAGAAAG
ACTACCGCGCCAATATTGTGCCCGTTGAATCTTACGACGAAGTGTTAAGA
TTGCTGAGGGAGAATAAAGTATTCGCAGGAATGATGAACGTTGACGTAGC
TGCGTGGTACCAAGATGAAATCAATGACGACACAAATCCAACACCGTTAC
GTATCGTACAGAAACTACCCGCTAAATTGTATGTCAATTGTTATCTACCG
ACCGATCTCGCTCGTGAAATGAaagaagttttcaaatgtatgTATTACTC
CAAAGATGAAGTTTACACGTATTCTATCGAAGCGTTTAAGCGACATTGTC
ATACAGAAACTCTCTATATCGGATCGATGAGTGAACTCATCATGAATAAC
CTCTACATACAGGTCTTGTTAGGAGCAGTTTGTGGCTTGATGTTGGTGGG
TATCATTTATGATCTAGTCAAATATTGGCAGGGAGGAATGAAGGATGATA
AGAAGAAGAAATTGATCAACAACAACCATGATGAGAAAATACAACTCAAC
GGGTTCAATTCTTACTAAAAAATTCAGACTTATTGCAAACAACCTTTTAA
AGGTGTTTGGCGAGAGAGGTTAAAGAAAGTGCCGTCAGACAAGAGACAAT
CTTTATTGGACGAACGGTAGAAACCAATTCAACTCATAAAGtcgaagaaa
aatatgaaaaactaaACTTGAAGTCGTTAGTTTCCATTGAACGATCGATT
AATTTGAAAATACCACAAACCTTCATTTTCAAACAGATAGCTTTAAATAG
TGGAGATTCGACAGTGTGTACAATGCAGAACATTATAAGGACCGGTATAC
ACtagaaatattttaatataCTTTTACACTAGGTTTAagttaatttttaa
aactttttgatagTTTGCCTATATTAACATGATATTCTAGATAACTTAGC
TCGATTAAGGGAACTCTTTCAATAAAAATAGGTGTTTGCTGTCCGGTAAA
AGACAGATACAGCTCTCGCCCAAGAACTACCTGTAAATAATTAATTGGCT
CTGTAGCTTGTGATGATTTCAAGCACCGATTGTTTGCGAGCTTATTTAGG
TGCTTCATATACAGTGTAATTATTTTCAAgacttatttttataaaaaatc
tttctttttgtaaaacGCTTACTTATAATATGCTTATGTAACAAGTAATT
AGAGAAATATTAATTGTTAAAGTAAAAACTCCTTAATTATTTATCTCTCA
TCTTTAAAGGACACTGTTGAGAGTCTATATGGTATCCCCATGTTGAATTT
ACGGCTAATCTGGTTTTGCAGTTATATTTTCAAGTCACGCTCCCTAGaac
caattttaataaaagCGAGAAAcagccaaaaattaaaaatctctGTGAAG
CAGTggtatttaaatttttcattaacttTCCCCACTAGTCTATCTGAACC
CCTTTTGAGAATCG Run BLAST on NCBI transcript from alignment at scaffold_77:118904..126396+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072354 ID=TCONS_00072354|Name=TCONS_00072354|organism=Clytia hemisphaerica|type=transcript|length=7493bp|location=Sequence derived from alignment at scaffold_77:118904..126396+ (Clytia hemisphaerica)
CGATAATCGATGATCTAACTCAATctcattataaaaacattttctcctGT
TTGAATTTTCTTCTACTTCAAATCATTAATACAAGGATAGGAAACAAACA
ATATTTCGCCAAAACTTCGTTTTACAGGTATGTAGACTTTTTTCCAGACC
TATCTATACAActtgtaaaaaacaaaatagttTTTCATGGGAACATTTTC
TCTAAGAACACTAGAGgtttttgaagttttcaaaGACATCTTGGAATTCA
AAAGAAGTTTAAAGCATTTTGAATGTGATTATAAGGTACTAAAACGAGAA
AGTTTAATTTCATCTTAGCGCTACAGGATTTGTATCAATTCAGGTTGGTT
ATAATTAGCAGTTGAAAAAGTTTGGCTAATACTGAAAAAGAggcattgaa
atatttttcaaacagaGAGGTTCAGACAGAGAGGGAGCTACGTTTGCGAA
GTTCTTGCACGTGCTTCTGGAGAAATCTCCAACTTTGAATTAATCTTTAC
CGTGTCCAAACTGTCACCATTAACTCGCCTTAATTTCCGTCTCAGGCTTG
CTATTAAAATGACTGTTCTATTTATCCTTTTCTGGATtctaaatcaattt
tcaattaatttttaatATCGCTTCACTGTCACTTCTTATCTAGGTATCTA
TATAAAAATATATCTCATTTATAATTCTCGAGACTGCCATAAAAAGCACA
ACCATGGGAGTTCGAAATTCATTCTGCTGACTTCACTCAACCCGTCTATA
TACAAAAGCATCGGATATTTACTGAAAATGACAGCTTGGTTCACATTTAA
CCTCTTTTTGATTGGCTGTAGTTGTTGCGCAACACTATGGGCGATCCCTA
CAGCACAACCTGGAACGACTCCAACAACAAACGTAACTCAAGAGACAACA
TCTGGCAACACTTCTGCAACCACCAACCACGATAATGAGAACACAAAAAC
GAAAGAGACCGTTCTAATGGATGTCGTATACTGGGAACAGAAACCTTTCA
TCTTCTACAATGCCAAGGGTGAAATTGATGGAATCATACCATTGATGTTC
CAACAAGCACAAGCTTACTGTATCCCTAACAACcattccatcaaaatgat
caaTTACGTCAAAAGAGCCGGCAGCCGaaaacatttttacaatttagcgC
GTTCTGATGTGGGATACCAAGAAGGAGAGTTGAGTGAGATCCGCCAGAAT
AACGCTTTTTGGATTCCAGTGGTCGCCTACTCCAACAAGAAAGTGGATGA
TTTCGTCAGCAAACGAAATCTCCGTGTTTTTCAACTCATGAAGTCAGACA
AGATTGCTGTTATCGTTCGTCGGGAAATGATCTCTCTCCCGAATAAAATC
ATCCGGGGTATTTTAAGCTGTCAACAAATTTTCTTCCTAGCTATCTTGAT
GGCAATTTTGTTCGGTTTGGTGCTTTGGGTGATCGAACGCCAACAAAGTA
AAGAACTTCCAAATTCCTTTATTAAAGGCTTAGGGACTGGACTTTATTGG
GCTATTGTCTCCATGACAACAGTAGGCTACGGAGATATCACACCAAAAAA
TCCGATCGGGCGATTTATTGCCTGTATTTGGTTATTTGTGGGCGTGATGG
TTGGGTGTATAATGACCGCCACAATGACTGATATTGTCACGGGCGTAAAA
GATTTGAACGTCTTGAACAAACGAGTCTCCGTTCTCGAGAATTCATTTGA
AGAGAAAACAGCAGAGAAAGACTATCGTGCGAAAGTGGTGCGCGCCGAAT
CATACGATCAAGTTTTAGAGATGGTTCGGAAAGGAGATGTGTTCGCAGGT
ATGATGAACGCGGACGTAGCGGCTTGGTACCAGGATGAAATTAACGATAA
TACTGCTTTAGTACCTTTGAAAATCGTCGAAAAACTACCTGCTAACTTAT
ACATCAATTGCTATTTACCTGCTGACTTGGCAgttcaaatgaaaaagatt
ttcaaatgtATGTATTATGCTAAAGACGAAGTGTACACCTATTCTATACA
AGCTTTTCAACAATACTGTCACACAGACACTTTGTACATAGGTTCAATGA
GTGATTTAGTTTTTCACAACATCTACATACAAATCCTTTTGGGTGCAGTG
GCAGGTTTGATGTTGATTGGTATTGGATATGACGTCACCAAATATTGGAC
ATACTTTAAAAGCTCAGGTAGCGAGAAAGATGAGAAAGAGACTGATCAAt
tgatgatgaagaaaaagaaagagaaaaatggTTTCAATGACCGATATCCG
ATATTCTGATGAAGGTACACAAGAAGTCGAGACGTGATCCACTATGTAGG
ATAGAGGGATGCCATGAGCTGCTTAAAAGCTTCCGAACTAAAGCTCTTTG
AGCAGATTAGATTGATGACACAAGATGTTGACACTTTTAGAAACGGTATT
AGAAGCAGAAGATAGCAAAAGCATTACAATACATCATTATTTCCTTTAGT
AGACGCTATTCCTTAAAACCTATAACTTCAGATGTTATTTAGTGATTATA
AATTGAAGCTAacaattttgctttattttctCAAGAGTGATTGAACTACG
gactttgaatttttattaatcGAGAACATTTGATGTAAATAGACCTTTAT
AACCAAGCAACATGTACAGGTATAATAATTAAAGGAATATCCAGATAAAA
TTGAAATTCGGTTTAAGAATTTCTGCCTATTTCAAAAACAAGATATTTgg
gttttaatttcaaatttttgctcaagaaaaaaaaaaagaaattctacGAA
ATTCAGAGATTTCACACCATTTCATCTTTACAGCTTTGGAATGTTAGTAA
GTAGAGATATTTGGCAGTTTTAATCAGGACCATAAAAAAGGTTTCTTTTA
GGccgaatttcatttttttatctagTTATCCCtttcataacaaaaaaaaa
atcgatcATTTGGTTAAACAATATTATGTTCAGTAGTGCTATGGAAAacc
aattcttgatatgcgtaactCATTTTCTAGCGGAATTACCCGAAGAAATC
CGGAATTTGacccctctctgttactaaaaatagaaacacggaggtcaaaa
tccggcttttttcgggtgcttccgtTGAAAATATGAcatcatcttgactt
acgcatatcaagaataagtCAATCCGGTTAGACCATAAATCTGGTCAAAA
GCCAATAAGGAATTGCAAAACCTAAATATTTCAACTTAAAGAACCAAAAA
AACTAATCATGATTTCAAAGGCGGTCGATTAACCATCTGAGGAATGCGAC
TAAAGAATACTTTTTACTGTAACGAAATCTCAATCAAGTCCAGATTATCA
GCATTGATCCTACTGTTTGATTTGAGGGAGAAATCACTTTCCTTAATCTC
TACCAAGGGGGGaactataaaaaaaaactaataaaattcCTCTTGGAAGA
TGGGATGAATAGAATGTAAAACCTTTTTATCAAATCGTTTAAAATACAGT
TTATAAATTCAGTGATGAGAAAAACTATTCTCTTTTCTTTGGATTCGCTA
ATTGTGTCTCCCCATTCAGCCAgttttggaaagaaaagttgGAAAATATA
ATCTTCTatgataaaaaaagtataagctGTGAAAAAGATAACAATTTTAT
ATTGTGTTAAAGATACTGTAATTTTCCGTACAAGTTTACCAAGGTTCTTT
AGAATCTATACATTTTGGGATTGATGCAAAGGACTTGCTATGTAGAGGTA
AGACCTGCGATTTCCACGTTCGTGTCTTTCTTGGAATGGAAAGTGAAAAG
GGGTGCTGGTGTGAAAAACTGAGTTCTGAATTGCTTTCATTTTAGATCAG
AATTACTTTTGAATACAAGAAGGTCTGTTGAAATTGGCAATTGATCAGAC
CACCATCCTTTAGTGTTAAGGGCTGTTAAATTTGgcaatcaatcaatcac
tgcCAAGTAAATTATCAAATCAATCGGAACTTTCTATCAAAAGCATGTGA
TTTTAATTGCGTTGCGAAAGAGGTTGCGTGACAGTGATTTATAGAGTACT
GTTTACGATTTTAATATTCTACCAAAACACTGTGTGACTGTTTAAAGAAA
CCAGGAAAGAACTCCTTTATTGAGGCAAAAACAATGTGAAATTTTATCAA
CGCTGCATGGTCAACAGTTAAAGAATTTACGGAACAAAAGCAAATTACCT
TTTGGATAGTGTATGATGATTTGACTTAAATGCCTTCCAAAGTGATTTCG
AAAGTAGGTATATCGATAGTGGAATGGGATTACGATTCCAAGAGCATTTT
AAGTTATAATGACaattccttcaactttttttgtttgttcaCAAAAAGTT
GttgcccatttcgcgcgaaagtgaaGACCGGCCTTAAGTTTCTTTGGCTC
TAAAGGTCTGAAGAGAATTGATTTTACAATCCTTTACATAAATTTGTACA
TTTTTATTCGAGCCAGTgggaaactttttcttttcgtttaaattttttGG
AACATTATAAAAATGATTTATCCGTTTGGCAATTTAATAAATTCTACAAT
ATCGCAAAATTGGATCAATATTACTTCGAATTGCCGCTTCAAATTAATCT
CTTAAACAAAATTAGTATGTAAAATCTGTCTGAGCTTCTGTCCATTTTGT
CTGAGATCGAGAACACTGAGCAGACTGAGAATTCCAACAAACTGCATTTT
AGACAAGGTGCAAATTTTAGTTGAACTATGGGGCTGCCAATGGAAAGTTC
TGCAGGAATTCGCATAAATATACAATACCTTTAAGatgaaaggaagtttt
caaGAAATTGGATATTCGAGATGGAAAGATTTCGAACATATTCTAATGGC
ATGAGATTTTACTTTCCTGAACTATTGAAGGGAGGTGTCTCTATAGAAct
attttagaaactttgataTAATGTAAAATAACTTGTCTTTTATTCTCTTT
ATTCAGAGACACCACATGGACAGCGAATGTTGAAAGAATCGATCATTAAC
TCTCATCGATATAAACCTACAACACCACCCTAACAACATCGACTGATTAC
TTCACATCAAAAGATCGCTCAGCGTTCGAGGAAAAACAAGCTGTGTATTT
TGCGCAACACCACAGCACTGACCGTGTTGATCATATAAAAACTGTAAACA
AACTACATCATTCGCTGGCAACATCCGATCATAGAAGGTCATCTCAAGAT
GCGTACTTTAAAACAACTCCTAGTTTTGATCGTTCTTGTTTTGCACAAAT
CACAAAATGTCTTGGCGAGCTCCAACACAACCTTCAACAACCAGACGACG
GTTGTCGGCAACAACGCGACCTTACCTAGCAACAACACTGACTCCATCTT
ATCAAACGAGACGGAGTACCTGATGGATGTGGTGTATTGGGAACAGAAAC
CGTTTCTTTTTTACAACGAGGAAAAACAAGAGATGGACGGTATCATCCCT
CAAATGTTTTCACAAGCAGACGAATTTTGCATCACCCAGAAAAACCGTAA
AATTAACCACTACAAACGTCGCATGCCAAGTCGCAAAGCCTTCTTCGATC
TCGCCCGCGCAGTAAACACGTCATATGGAGAGGGCGATCTTGAAGGAATT
CGCGCTGACCGCTCGTTTTGGGTTTCAGTGCTGGCGTACGCCGATCGCAA
CGAAGATAAGTTTAAGAAGAACCGAAAATTGAGGGCTTTCCAACTGATGA
CATCGAACGAGATTGCGGTCATTGTCCGTCGTGAGATGATCTCCCTACCA
AACAAAATCATCCGAGGTATATTGAGTTGTGAACAAATTTTCTTCCTCGC
TATCTTGATGGCTGTTTTGTTCGGCCTTGTTTTGTGGATGATCGAACGAT
ACCAAAACGAGGATTTCCCAGAATCCTTCATTCGTGGTATCGGCAGCGGT
TTGTATTGGTCTATCGTTTCCATGACGACGGTAGGGTACGGAGATATCAC
CCCAAAAAATCCAATCGGGCGATTTATCGCGTGTATTTGGTTATTCGTGG
GCGTAATGGTGGGATGTATCGTGGTGGCCACTATGACGGACGTCGTGACG
GGCGTAGGTGATTTGAATGTGTATGGACAAAAGGTGGCTGTACTGGAGCA
TTCTTATGAAGCAAAGACCGCAGAGAAAGACTACCGCGCCAATATTGTGC
CCGTTGAATCTTACGACGAAGTGTTAAGATTGCTGAGGGAGAATAAAGTA
TTCGCAGGAATGATGAACGTTGACGTAGCTGCGTGGTACCAAGATGAAAT
CAATGACGACACAAATCCAACACCGTTACGTATCGTACAGAAACTACCCG
CTAAATTGTATGTCAATTGTTATCTACCGACCGATCTCGCTCGTGAAATG
AaagaagttttcaaatgtatgTATTACTCCAAAGATGAAGTTTACACGTA
TTCTATCGAAGCGTTTAAGCGACATTGTCATACAGAAACTCTCTATATCG
GATCGATGAGTGAACTCATCATGAATAACCTCTACATACAGGTCTTGTTA
GGAGCAGTTTGTGGCTTGATGTTGGTGGGTATCATTTATGATCTAGTCAA
ATATTGGCAGGGAGGAATGAAGGATGATAAGAAGAAGAAATTGATCAACA
ACAACCATGATGAGAAAATACAACTCAACGGGTTCAATTCTTACTAAAAA
ATTCAGACTTATTGCAAACAACCTTTTAAAGGTGTTTGGCGAGAGAGGTT
AAAGAAAGTGCCGTCAGACAAGAGACAATCTTTATTGGACGAACGGTAGA
AACCAATTCAACTCATAAAGtcgaagaaaaatatgaaaaactaaACTTGA
AGTCGTTAGTTTCCATTGAACGATCGATTAATTTGAAAATACCACAAACC
TTCATTTTCAAACAGATAGCTTTAAATAGTGGAGATTCGACAGTGTGTAC
AATGCAGAACATTATAAGGACCGGTATACACtagaaatattttaatataC
TTTTACACTAGGTTTAagttaatttttaaaactttttgatagTTTGCCTA
TATTAACATGATATTCTAGATAACTTAGCTCGATTAAGGGAACTCTTTCA
ATAAAAATAGGTGTTTGCTGTCCGGTAAAAGACAGATACAGCTCTCGCCC
AAGAACTACCTGTAAATAATTAATTGGCTCTGTAGCTTGTGATGATTTCA
AGCACCGATTGTTTGCGAGCTTATTTAGGTGCTTCATATACAGTGTAATT
ATTTTCAAgacttatttttataaaaaatctttctttttgtaaaacGCTTA
CTTATAATATGCTTATGTAACAAGTAATTAGAGAAATATTAATTGTTAAA
GTAAAAACTCCTTAATTATTTATCTCTCATCTTTAAAGGACACTGTTGAG
AGTCTATATGGTATCCCCATGTTGAATTTACGGCTAATCTGGTTTTGCAG
TTATATTTTCAAGTCACGCTCCCTAGaaccaattttaataaaagCGAGAA
AcagccaaaaattaaaaatctctGTGAAGCAGTggtatttaaatttttca
ttaacttTCCCCACTAGTCTATCTGAACCCCTTTTGAGAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072354-exon-scaffold_77-1491911889:118904..119030 | TCONS_00072354-exon-scaffold_77-1491911889:118904..119030 | Clytia hemisphaerica | exon |
| TCONS_00072354-exon-scaffold_77-1510915933:118904..119030 | TCONS_00072354-exon-scaffold_77-1510915933:118904..119030 | Clytia hemisphaerica | exon |
| TCONS_00072354-exon-scaffold_77-1575043694:118904..119030 | TCONS_00072354-exon-scaffold_77-1575043694:118904..119030 | Clytia hemisphaerica | exon |
| TCONS_00072354-exon-scaffold_77-1491911889:123810..126396 | TCONS_00072354-exon-scaffold_77-1491911889:123810..126396 | Clytia hemisphaerica | exon |
| TCONS_00072354-exon-scaffold_77-1510915933:123810..126396 | TCONS_00072354-exon-scaffold_77-1510915933:123810..126396 | Clytia hemisphaerica | exon |
| TCONS_00072354-exon-scaffold_77-1575043694:123810..126396 | TCONS_00072354-exon-scaffold_77-1575043694:123810..126396 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:118904..126396 + |
Blast
The following BLAST results are available for this feature:
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