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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072356 ID=TCONS_00072356|Name=TCONS_00072356|organism=Clytia hemisphaerica|type=transcript|length=2011bp
CTAAACCTAACACATTTTTGTTCTTtgaagagagagaaaaaatgttttgg
cGAATTTCTGGTAAATGAAATTGATCCACAAAAACCGTAAGAATGAaagt
aaaaatgtttttgataacAATCTTGTTCGCTGGTCTTCTCCACATCACAA
CTCTGGTCATAGCTTCAAACGAAGCACTTACGCCAGACAATACAacactt
gaaaaaaataacacaaCACTCGCAACAGACAACGCAACGCTTGCGATAAA
TAACCAAACACTTGGACAAAATGATACTACAGTTGCAGCAAATAATACCA
CCATCGGTAGCCATGGCAACAACCAAAATATAACATCGGAAACAGATGAG
ACAATAGAGACGACAAAAGAAAAGGAGAATGGAACTAGCattgaagaaaa
agaattaCTACATGCGATCTTCTGGGAAGTCAAACCGTTCATCTTCAAGA
ACTCGAAAGGAGAGATTGATGGAATCATTCCACAGATCTTTGAGCAAGCA
AGTGTCTTTTGTAACGGTCGCAAGCCTTTCATTCATTATAAAGTGAAAAT
GGATTCAAGGCGTGACTTTTATGATCTGGCTCGATCAAACGTATCGTACC
ATTCAAACACATCCGTGTTAAAAAGTGTCGACAAACAGCGGGCTTTCTGG
GCCCCAGTCCTCTCCCCTACTAATACAAAGAACGACGGCTTTCTTAAAGA
GCGAGCTCTCAGATCAtttcaaatcttaaaaacaacCCACATCAGTATTA
TCGTGAGACGGGACTTAATTTCATTACCTAACAAAATTTTCCGTGGCATC
ATGGCGTGCGAACAAATTTTCGTTCTCGCAATTTTGCTAGCGATTATTGT
TGGTATTTTTCTGTGGGTCATCGAAAGATACCAAAACACCGATTTCCCGA
ATTCCTTTTGCCGAGGCGCGATGACTGGTTTGTATTGGTCGATTGTTTCC
ATGACGACGGTAGGTTACGGAGATATTCAGCCGTCGTCGGCCGTGGGACG
ATTCGTGACGTGTTTCTGGTTGTTCATCGGAGTTATGGTAGGTTGTGTGA
TGACTGCAACGGTGACGGACGTCGTGGCTGGAAACGATTTTGATATCCAA
AATAAAAAGGTAGCTGTACTCGAAAACTCTTTTGAGGAGCGAACAGCGGA
GAAGCAATATCGCACTAACGTGGTATCAGCAAAATCGTATGATGAAGTAT
TAGAAATGGTACGAAAACAAGAAGTCTTTGCCGCCATGATGAATTCAGAC
GTAGCCGCATGGTATGACGAAATCATAAGTGATGATACAGCGGAAGTACC
TTTGAGGATGGTTGCTAAGTTACCGGCCAATCTGTACGTACATTGCTTGT
TACCAACCGATCTCCTCCATAAGATGAAGGTGATCTTCAAATGCATGTAT
TACCAGAAAGATGAAGTGTACACGTTTGCCGAGGAGTCTTTCAAAGTGCA
TCATCATCCGCAGAACATCTACATCGGTTCCACAGGTGATCTCATGAGTG
AGAATGTCTTTTGTCGCGCTATTATCGGTTTACTAGCCGGTTTGATCATT
CTCGGTTTCGGATTCGATGGTTGGAAGTATGTTCAGTTCCGAGTGAACAC
CAAGAAACACGGTGCAACAAACGGGGAGAATAAAGAAATGACCAAGTATT
ATAACTCAGCACAAGCAGCTGCACTCATATAAGACAAGTTCTCTCGTTGA
GACACCTGTTAATAACATTTCCAGTTCAAAGCAGCGAGAAGGATGAGTAA
TCAGAAAGGCTTATCTAAAAAGCAGCTCTTAGCAGTATTCAATGAAAGAA
TAATTACACACAAACAGAAGCCCAGTCCGTTTTAAACTGGGGATTTGACA
ACTCTTGATGTCTTTTGACTATTATTGACCGAAAAACGGCTAAGCAGCGA
CAAAGGATAAAAAATTGATTCAGAGTAAATTAATAATGagcaaaattgtt
aaaattgaaCTGTATTTTGATAGGATAAGTTTGTGTATATTGGTTTTCAA
AAAGACGAGGT Run BLAST on NCBI transcript from alignment at scaffold_77:130994..133385+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072356 ID=TCONS_00072356|Name=TCONS_00072356|organism=Clytia hemisphaerica|type=transcript|length=2392bp|location=Sequence derived from alignment at scaffold_77:130994..133385+ (Clytia hemisphaerica)
CTAAACCTAACACATTTTTGTTCTTtgaagagagagaaaaaatgttttgg
cGAATTTCTGGTTAGTTTACagactttcattttaaaaagagattttattT
CAACATTTATTCGTGTATCCCACTGTAAACTTTTTCTAAGGTCANgcttt
cattaaaaaaaaaaactttcaaacttttattCGTGTATCCCGCTGTAAAC
TTTTTCTAAGGTCATTTTTTCTGATCGTCTGAAGAACTATTTCGTCATTT
TCACATCCGAAACTTTTCCAAGAATCAAAACCATTTGAAAGGATGATCAT
TTCTAAATATGGTCAAATTCATTACATCAACACAGCGGGTTTCTCTCATA
AATGGCCATTTCCCACTTTTCCGGAATCAAGAACCTGCCTATCCACTCTC
AGGCTTTACCTTGCTTTGACTTTacttttttcacctttcagGTAAATGAA
ATTGATCCACAAAAACCGTAAGAATGAaagtaaaaatgtttttgataacA
ATCTTGTTCGCTGGTCTTCTCCACATCACAACTCTGGTCATAGCTTCAAA
CGAAGCACTTACGCCAGACAATACAacacttgaaaaaaataacacaaCAC
TCGCAACAGACAACGCAACGCTTGCGATAAATAACCAAACACTTGGACAA
AATGATACTACAGTTGCAGCAAATAATACCACCATCGGTAGCCATGGCAA
CAACCAAAATATAACATCGGAAACAGATGAGACAATAGAGACGACAAAAG
AAAAGGAGAATGGAACTAGCattgaagaaaaagaattaCTACATGCGATC
TTCTGGGAAGTCAAACCGTTCATCTTCAAGAACTCGAAAGGAGAGATTGA
TGGAATCATTCCACAGATCTTTGAGCAAGCAAGTGTCTTTTGTAACGGTC
GCAAGCCTTTCATTCATTATAAAGTGAAAATGGATTCAAGGCGTGACTTT
TATGATCTGGCTCGATCAAACGTATCGTACCATTCAAACACATCCGTGTT
AAAAAGTGTCGACAAACAGCGGGCTTTCTGGGCCCCAGTCCTCTCCCCTA
CTAATACAAAGAACGACGGCTTTCTTAAAGAGCGAGCTCTCAGATCAttt
caaatcttaaaaacaacCCACATCAGTATTATCGTGAGACGGGACTTAAT
TTCATTACCTAACAAAATTTTCCGTGGCATCATGGCGTGCGAACAAATTT
TCGTTCTCGCAATTTTGCTAGCGATTATTGTTGGTATTTTTCTGTGGGTC
ATCGAAAGATACCAAAACACCGATTTCCCGAATTCCTTTTGCCGAGGCGC
GATGACTGGTTTGTATTGGTCGATTGTTTCCATGACGACGGTAGGTTACG
GAGATATTCAGCCGTCGTCGGCCGTGGGACGATTCGTGACGTGTTTCTGG
TTGTTCATCGGAGTTATGGTAGGTTGTGTGATGACTGCAACGGTGACGGA
CGTCGTGGCTGGAAACGATTTTGATATCCAAAATAAAAAGGTAGCTGTAC
TCGAAAACTCTTTTGAGGAGCGAACAGCGGAGAAGCAATATCGCACTAAC
GTGGTATCAGCAAAATCGTATGATGAAGTATTAGAAATGGTACGAAAACA
AGAAGTCTTTGCCGCCATGATGAATTCAGACGTAGCCGCATGGTATGACG
AAATCATAAGTGATGATACAGCGGAAGTACCTTTGAGGATGGTTGCTAAG
TTACCGGCCAATCTGTACGTACATTGCTTGTTACCAACCGATCTCCTCCA
TAAGATGAAGGTGATCTTCAAATGCATGTATTACCAGAAAGATGAAGTGT
ACACGTTTGCCGAGGAGTCTTTCAAAGTGCATCATCATCCGCAGAACATC
TACATCGGTTCCACAGGTGATCTCATGAGTGAGAATGTCTTTTGTCGCGC
TATTATCGGTTTACTAGCCGGTTTGATCATTCTCGGTTTCGGATTCGATG
GTTGGAAGTATGTTCAGTTCCGAGTGAACACCAAGAAACACGGTGCAACA
AACGGGGAGAATAAAGAAATGACCAAGTATTATAACTCAGCACAAGCAGC
TGCACTCATATAAGACAAGTTCTCTCGTTGAGACACCTGTTAATAACATT
TCCAGTTCAAAGCAGCGAGAAGGATGAGTAATCAGAAAGGCTTATCTAAA
AAGCAGCTCTTAGCAGTATTCAATGAAAGAATAATTACACACAAACAGAA
GCCCAGTCCGTTTTAAACTGGGGATTTGACAACTCTTGATGTCTTTTGAC
TATTATTGACCGAAAAACGGCTAAGCAGCGACAAAGGATAAAAAATTGAT
TCAGAGTAAATTAATAATGagcaaaattgttaaaattgaaCTGTATTTTG
ATAGGATAAGTTTGTGTATATTGGTTTTCAAAAAGACGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072356-exon-scaffold_77-1491911889:130994..131053 | TCONS_00072356-exon-scaffold_77-1491911889:130994..131053 | Clytia hemisphaerica | exon |
| TCONS_00072356-exon-scaffold_77-1510915933:130994..131053 | TCONS_00072356-exon-scaffold_77-1510915933:130994..131053 | Clytia hemisphaerica | exon |
| TCONS_00072356-exon-scaffold_77-1575043694:130994..131053 | TCONS_00072356-exon-scaffold_77-1575043694:130994..131053 | Clytia hemisphaerica | exon |
| TCONS_00072356-exon-scaffold_77-1491911889:131435..133385 | TCONS_00072356-exon-scaffold_77-1491911889:131435..133385 | Clytia hemisphaerica | exon |
| TCONS_00072356-exon-scaffold_77-1510915933:131435..133385 | TCONS_00072356-exon-scaffold_77-1510915933:131435..133385 | Clytia hemisphaerica | exon |
| TCONS_00072356-exon-scaffold_77-1575043694:131435..133385 | TCONS_00072356-exon-scaffold_77-1575043694:131435..133385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_77 | supercontig | scaffold_77:130994..133385 + |
Blast
The following BLAST results are available for this feature:
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