TCONS_00072387 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072387
Unique Name	TCONS_00072387
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	657

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_77:523138..529503+
coding sequence from alignment at scaffold_77:523138..529503+

transcript sequence

>TCONS_00072387 ID=TCONS_00072387|Name=TCONS_00072387|organism=Clytia hemisphaerica|type=transcript|length=657bp
ATGGAATGCAATACGTTGCTGATTTAAATATTGTACACCGTGATTTGGCG
TGCAGAAACATTTTAGTTGGTTACAATCGTGTATGTAAAGTTGCTGATTT
CGGACTGGCTAAAAAAGTTGGAGATAATGGAATATATCAACGTACAGAAC
AGGCAAAACTACCGGTCAAATGGCTACCCCCTGAATCCATCAAATACGGA
CGATCATCTCTACAAAGCGATATCTGGTCATATGGTATCATGATGTGGGA
AATTGTCACCATTGGTGCCGTGCCATATCCTGGTCACAAATCCAAAGAAA
TTCCTGGTCTGTTAAACAAAGGTTATCGAATGGagaaaccattgcattgc
aaaGAAGAATTGTATGAATTGATGTTGCAGTGCTGGagtgaagatgaaaa
gaaaagacCGAATTTCAAATTCATTCACCAAAAATTAGAACGAATGATTG
AGGGACTGtcaaCGTACATCAACTTGGAAGCTTACTCAGACGATTCGTAT
TTGACTTTTGGTGCTGGAGATGAAATTTTGGATGAAGATGAGATGATCGA
TATTgaggatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaat
gaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatga
atgaatt

Run BLAST on NCBI

protein sequence of TCONS_00072387-protein

>TCONS_00072387-protein ID=TCONS_00072387-protein|Name=TCONS_00072387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
GMQYVADLNIVHRDLACRNILVGYNRVCKVADFGLAKKVGDNGIYQRTEQ
AKLPVKWLPPESIKYGRSSLQSDIWSYGIMMWEIVTIGAVPYPGHKSKEI
PGLLNKGYRMEKPLHCKEELYELMLQCWSEDEKKRPNFKFIHQKLERMIE
GLSTYINLEAYSDDSYLTFGAGDEILDEDEMIDIEDE

Run BLAST on NCBI

transcript from alignment at scaffold_77:523138..529503+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072387 ID=TCONS_00072387|Name=TCONS_00072387|organism=Clytia hemisphaerica|type=transcript|length=6366bp|location=Sequence derived from alignment at scaffold_77:523138..529503+ (Clytia hemisphaerica)
ATGGAATGCAATACGTTGCTGATTTAAATGTAAGTAAATGAATTATTTAG
AAGAttattcccagctggcacacaacgttgtttcaacgttcatctgacgt
tatatggacgttgtgaacgctagaaaaacgtcgaaacaacgttgtgtagt
ATCGGCTGTTCTATATTTTTATTCGTCCTCTTAAATTGCTTCTGTTCATG
CCCAGATGGCACACAatgtcaaaacaacgtccatgtgacattcataacgt
ccaaataacgttatttgaacgttaaaacaacgttgtgtgccagctgggtg
atCCAATAGAGGATAAAATGGATTCTTTCGTTGTctcagaccatgttcac
acgttacgtGTTATTATCGCTCTGGTATGATAGTTCTTACGGATAGAAAG
TGTTCGTATtgatttcggaacgtttcggagcaagaaaacggagcagtttc
GTTCCGAAGAAGAAAGTGAAGCGAAAACATTTTGCTTTGTCACGTCTTCT
TTTtcgacgtttcgaattttgacgttcgcgCTTGTTTCGCCACCTTTTCT
TTTCGGAGCGATACGAAATTGCAACGTCCAGAACGATGGTTGAACGTTAA
AAGCATCGCTTCCTttccaagctggcacacaacgttgtaaACCGTTATTT
GAAGGTTATAAGAAATACCTGCCTTTTTGTAGCAGTGTTAAAAGTTCATT
CGTCTCAGCAGAGTATATAAAGAGGTTTCcacgtctcaaaattctgcttA
ATTCACCAAAATATCTAGAATtatgtgctaatttgctgtgtaaaagCCAT
TTTCCGACCTTCCTTTCCTTACTGGCCACTGTTTTAGGCTATCGCATGGC
ATAAAATGAAACAGTTCTAAGAATTCTTAGCCACCCGACTTTTATGTCAG
CTGTATAATCGTTTATTTCAACAACTTTTTTACTTCAGATTGTACACCGT
GATTTGGCGTGCAGAAACATTTTAGTTGGTTACAATCGTGTATGTAAAGT
TGCTGATTTCGGACTGGCTAAAAAAGTTGGAGATAATGGAATATATCAAC
GTACAGAACAGGTATCTCTTTGTTTTCACTGGAGCGATTTTATTGAATGT
TCTTAATCAACTAATTTTCCCGTAGGATTTATCATTattgaccttttcat
aaataacgtcacgaacatcacttgcctcgtattcaaacagtTACCAttgt
gattatgtcccttgagacattaaatgattttttatgaattgaaaGTAGTT
TAAATAAAAACCGCTGGGAGTTAACCACTATGGCAAGTAGGAGTTGACTA
CTCAATTCTTCGCTACTTCGataaaatgggtgccgggtatgtgcgagcca
caAGATCTTTCAAAGAAGTACAACAAGCGATAAATTAACAATCGATTCTC
TGAAAGGATcccaaaattacgaaatatcaaaaaccgactccctcaaaggg
tcataaaatctgataattttgagctaaaaattgGAATCAAATAAACTCTC
AAAGGGTTGTGAAAACGTCTAAATTCAGTCTCTCAAcgggtcgattttcg
aactttcccCGAATCCTTAGACAAAGAGATTTTATAACTTATCAATGAAA
GAATCCTTCTTATGGGACAGAGAAACTAAAAATTGAtcacttttttatca
tttcagGCAAAACTACCGGTCAAATGGCTACCCCCTGAATCCATCAAATA
CGGACGATCATCTCTACAAAGCGATATGTAAGCAAATATTTAATGTTCAT
TATTCAGAAGaccaaactcgaacccagccTCTTAGTTCTTTCACTTACTA
GTGTATCATGTCCTAGCGACCGTAGTTAAGTGGCACAAGGTCGTGGGTTC
GATCATCGGTcgagtcataccaaagattcccaaaatggtacttgatgcct
ctctgcttgatgctcagtaattaagagaagaatcaagggtaagtggagca
atctaacgagaaagagtggcgccctcccctaccttcgggtggaTAGCTAT
CGatagaggagccttcgggtcgcttccgactgcggtcgcaaacttactta
ctactaTGTCCATCGATAAAATATGAAAAGTGGTGCTAGTGTCTCTGAGT
AAAACATTATCTTCAAAAGACCAAATTTTCTACGAATCACCGAGAGTGTT
TTGTAGGAAAGTGTCGCATGAGCACACGATTAAGTAGACAAACAGAGAGT
TCATGAACGTCATGTGTACGTTGAGAGaatgttatatggacgttataaAC
GTCAAATGTACGTTGAGAGaatgttatatggacgttataaatatcaaatg
tacgtTGAGAGAATGTTACATGGACGTTATAAACGTCAAATGTACGTTGA
GAGAATGTTATATGGATGTTATAAACGTCAAATGTACTTTGATAGAatgt
tatatggatgttgtgaacgtgAAATGTACGTTCATAGGATGTTTTTCTTT
CCATTTCAGCTGGTCATATGGTATCATGATGTGGGAAATTGTCACCATTG
GTAAGAAAGAAAtacatgatattcatgacgtaacgtcttctacggaaaga
ccccggttttagccagtagtggcaaattttatacaacttttttttagttt
gaattttccactactggctaaaaccggggtatttccgtagaaaacaatac
gtcatgaatatcatgaaatcCAATTTGAGAAttctttattgatttatttt
tcttgacaAGCTCGTTGGCACAACCACGGTGACCCTTCCTAAATGGAAAA
TTCGGCCAGAATTTTGTCCCTGTTGGGGAAAAAACCCTACAATTTCTccc
ccactgaaaaattgactttgatttcatccccatttcaATCTTAATTGCGT
TAAAATCGCACTTCAAAATCATTCCAATTTGATTAATTTTGACCTAGGAA
CAAAAAGATTTCTATCCTCTCCCAGCttgcacataacgttgttttaacat
tcatttgacgttatatggacgttgtgaacgttcaataaactttgaaacaa
cgttgtgtggcaGCTGGGCTTTAAGATTTCGATGTAAGTGTTCATCCCTT
GTGAGAAGTACCTCCTCGggatctttttcttttatcagcCAGTAATAAAA
AGTGCCTTTATCTTGAATTTGgtatttccagaaaaatattgaatatgggg
gatggaggatataacattttttggaaatttaccccggacattgtgaattt
tgacctcccccggacagcaggtctgaCCCCGTCCCGGATAAGCATTAGTT
GTTCCTCTGGACACTCAAAATTagcctcaaacagagcaaaattaccccca
aacggAGCATTTTCTAGAAGAGCCCAATTTGGTATTTAATAGGTGCCGTG
CCATATCCTGGTCACAAATCCAAAGAAATTCCTGGTCTGTTAAACAAAGG
TTATCGAATGGagaaaccattgcattgcaaaGAAGAATTGTAAGTCACTG
ATCTCTAACTTcttgactggatcgggcttCCTATATCAAATGAAGCACTC
TAGTTTTAGAGTTGActagtccgccatcttgtttttaaTGACTGGCATGA
ACAGCGGGATACGAATATTTTTCAagacaaaattgaaaacaacATGGCGG
ATTTGGATACGCTTCCACAGGAAATCTGTGAGCAGTTAGCTCATCTGGTG
TGTAAGGGAATATCGCTgttgacaaatcaaaaaattaaatttgagatTGG
CCCTTTTTGCATAGTGCTCCTCACTATGTCCCATCTACGTAAAACagggt
caatctcaaaatttatgttCAGACAAACAGAGAAACTCTTAGTTATCTCA
GgcaataattttgagatttgaCCTTTTGATTTGTAAACGGCGATATGATA
TCCGTGGATGAGACTATATTAATACCCCAGTCATCGTCAtataaaaaata
ctaaaaattatAGGTGGTTCAAAATAATAGGTCGTTAATTTCGTCCTCTC
TTGATTTCAAGTGTGGAAAAGTTTGGCCTTTCGTCTTCAACAGAATACAG
AAAGATTCAAACAATATTATCATGTTTCAATTGCCAATGACATACTATGA
GACTTTTACATTCTGATGATGATGGTTTTGGCGTTTGATATCAAAacaat
atgcaaaaatagatattttttctacgaagtgatgaaatttaatggaacaa
tAATACGTTCAAAACAGGTTTAAAGATTGAGgaatataacacccctttct
cacagaccaactgggaccccttcccactggaaataaTTGGCCAAagaatc
gtccccggtggaaaattatactccaattctGCCGTTTCAGAGCCAAAGGA
GGTaagttacaaattttcaaaaaatcttttttttcaaaaatcatggtTTT
TTGACCTGCTCTATCAGATGGTGTTACTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgaaaaaa
tgttttgaaagtgaaaaattggaGGTAAGTTACAAAATCTGTTTAAATAA
AAAGCTGTAAGtaacaaagattttccaaaattttgcttAAATAGATGTAA
GTAACACATTTctgaacaaaaaatgaattaatcaAAATACTTTCAATAAG
ATCTGAATAAATTTTATGGAAATCGATTCTTTGCTAGATTCTTTATATTT
AGTGTAAAAATTGGTACTAAATGGTCAAAATTGATCCTGCTGAcacgttt
ttcttgatttattcCAAATCcagaatattcaaaaattgttaCATACCTCC
TTTGGCTCTAAAACGGCagaatttttgtccccactgaaaataatcaaaaa
taacaattcTCGTTGCATGATATTGTGCTATTTGTCCCATCTTCACTGAA
TTTTCTgtcttgaaaagaaaagaattgaATCCCCAGCCacaaaaaatatg
agaatataTATTCCTTTTCATTTCCTTATTTTCTATACCCACTAGCTGAA
GAATCGCACCGGGTCCGTGGGAAGGGGGTGTAATATACAATTATGCAAGA
TCGGCTAGATAAATAACTAACCTTCAAATAATAgaacaaattttgatttt
attgtttCGCTTTTTCAGGTATGAATTGATGTTGCAGTGCTGGagtgaag
atgaaaagaaaagacCGAATTTCAAATTCATTCACCAAAAATTAGAACGA
ATGATTGAGGGACTGGTAATATGGATTCTTTCAAACAAAGATTCTCATTG
AAAATACTCTTATAACGGAAATAGTCTGTACTCTTTATGTTGAGGgcgtg
tgacgtccagggtggtctggaaaaaaaataatccagggtggtcagtaaaa
atGAGGTTAAAAATCCATCAACAGGGGTACAGTTTTTTTCTGGGTTTTCC
TGGCTTTTTCTATCTGCTTCGAACTCAAAGGACTGTCATTGGGGGTGATT
CTCCTAGAATCCACTGATCATGTACATTCAAAATATGATAGAACAAGTTT
TAATGTTTCCTTTCTGGTAGGGAGGGTactctttaaaaaattaatcaaac
ccTTATAAAAGGCTGGCTTCTCCTGACTTTTTCTCGGAGTACCTAAAAAA
ACTACTCCTAAAAATACTAGACTTTTTTGACCATCTTGAAAAACACAACT
CTTAAAAAGGACTCGAAAAAGGactggatttttcaatttttctaaccttt
ttttAGTTTCGAACTCACAAAAAGATTGGATTACACCCTGtatcacagcc
ccggtgggactTTCTTCCTGAGTGGGATAAAAATACCTCAATCTTATTGt
ttcaagtttgaaaaattcaatggggatggttttggagtacaactTTTaag
cattgaatttcgagtAGGGATAAAATCAGAGTtaatttctcagtggggct
gaaattccagctgaaattccaaggtattttcccactggggactaattttt
tgccaaattttctggGGTCCCAGCatgtctgtgacacaggggtgtttaat
cTACCCGTTTTCATAAAtctgttcttgtaaaaaagtatgtaaaggaaata
ttttacttttttttcagtcaaCGTACATCAACTTGGAAGCTTACTCAGAC
GATTCGTATTTGACTTTTGGTGCTGGAGATGAAATTTTGGATGAAGATGA
GATGATCGATATTgaggatgaatgaatgaatgaatgaatgaatgaatgaa
tgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatg
aatgaatgaatgaatt

Coding sequence (CDS) from alignment at scaffold_77:523138..529503+

>TCONS_00072387 ID=TCONS_00072387|Name=TCONS_00072387|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_77:523138..529503+ (Clytia hemisphaerica)
GGAATGCAATACGTTGCTGATTTAAATATTGTACACCGTGATTTGGCGTG
CAGAAACATTTTAGTTGGTTACAATCGTGTATGTAAAGTTGCTGATTTCG
GACTGGCTAAAAAAGTTGGAGATAATGGAATATATCAACGTACAGAACAG
GCAAAACTACCGGTCAAATGGCTACCCCCTGAATCCATCAAATACGGACG
ATCATCTCTACAAAGCGATATCTGGTCATATGGTATCATGATGTGGGAAA
TTGTCACCATTGGTGCCGTGCCATATCCTGGTCACAAATCCAAAGAAATT
CCTGGTCTGTTAAACAAAGGTTATCGAATGGagaaaccattgcattgcaa
aGAAGAATTGTATGAATTGATGTTGCAGTGCTGGagtgaagatgaaaaga
aaagacCGAATTTCAAATTCATTCACCAAAAATTAGAACGAATGATTGAG
GGACTGtcaaCGTACATCAACTTGGAAGCTTACTCAGACGATTCGTATTT
GACTTTTGGTGCTGGAGATGAAATTTTGGATGAAGATGAGATGATCGATA
TTgaggatgaatgaGGAATGCAATACGTTGCTGATTTAAATATTGTACAC
CGTGATTTGGCGTGCAGAAACATTTTAGTTGGTTACAATCGTGTATGTAA
AGTTGCTGATTTCGGACTGGCTAAAAAAGTTGGAGATAATGGAATATATC
AACGTACAGAACAGGCAAAACTACCGGTCAAATGGCTACCCCCTGAATCC
ATCAAATACGGACGATCATCTCTACAAAGCGATATCTGGTCATATGGTAT
CATGATGTGGGAAATTGTCACCATTGGTGCCGTGCCATATCCTGGTCACA
AATCCAAAGAAATTCCTGGTCTGTTAAACAAAGGTTATCGAATGGagaaa
ccattgcattgcaaaGAAGAATTGTATGAATTGATGTTGCAGTGCTGGag
tgaagatgaaaagaaaagacCGAATTTCAAATTCATTCACCAAAAATTAG
AACGAATGATTGAGGGACTGtcaaCGTACATCAACTTGGAAGCTTACTCA
GACGATTCGTATTTGACTTTTGGTGCTGGAGATGAAATTTTGGATGAAGA
TGAGATGATCGATATTgaggatgaatgaGGAATGCAATACGTTGCTGATT
TAAATATTGTACACCGTGATTTGGCGTGCAGAAACATTTTAGTTGGTTAC
AATCGTGTATGTAAAGTTGCTGATTTCGGACTGGCTAAAAAAGTTGGAGA
TAATGGAATATATCAACGTACAGAACAGGCAAAACTACCGGTCAAATGGC
TACCCCCTGAATCCATCAAATACGGACGATCATCTCTACAAAGCGATATC
TGGTCATATGGTATCATGATGTGGGAAATTGTCACCATTGGTGCCGTGCC
ATATCCTGGTCACAAATCCAAAGAAATTCCTGGTCTGTTAAACAAAGGTT
ATCGAATGGagaaaccattgcattgcaaaGAAGAATTGTATGAATTGATG
TTGCAGTGCTGGagtgaagatgaaaagaaaagacCGAATTTCAAATTCAT
TCACCAAAAATTAGAACGAATGATTGAGGGACTGtcaaCGTACATCAACT
TGGAAGCTTACTCAGACGATTCGTATTTGACTTTTGGTGCTGGAGATGAA
ATTTTGGATGAAGATGAGATGATCGATATTgaggatgaatgaGGAATGCA
ATACGTTGCTGATTTAAATATTGTACACCGTGATTTGGCGTGCAGAAACA
TTTTAGTTGGTTACAATCGTGTATGTAAAGTTGCTGATTTCGGACTGGCT
AAAAAAGTTGGAGATAATGGAATATATCAACGTACAGAACAGGCAAAACT
ACCGGTCAAATGGCTACCCCCTGAATCCATCAAATACGGACGATCATCTC
TACAAAGCGATATCTGGTCATATGGTATCATGATGTGGGAAATTGTCACC
ATTGGTGCCGTGCCATATCCTGGTCACAAATCCAAAGAAATTCCTGGTCT
GTTAAACAAAGGTTATCGAATGGagaaaccattgcattgcaaaGAAGAAT
TGTATGAATTGATGTTGCAGTGCTGGagtgaagatgaaaagaaaagacCG
AATTTCAAATTCATTCACCAAAAATTAGAACGAATGATTGAGGGACTGtc
aaCGTACATCAACTTGGAAGCTTACTCAGACGATTCGTATTTGACTTTTG
GTGCTGGAGATGAAATTTTGGATGAAGATGAGATGATCGATATTgaggat
gaatgaGGAATGCAATACGTTGCTGATTTAAATATTGTACACCGTGATTT
GGCGTGCAGAAACATTTTAGTTGGTTACAATCGTGTATGTAAAGTTGCTG
ATTTCGGACTGGCTAAAAAAGTTGGAGATAATGGAATATATCAACGTACA
GAACAGGCAAAACTACCGGTCAAATGGCTACCCCCTGAATCCATCAAATA
CGGACGATCATCTCTACAAAGCGATATCTGGTCATATGGTATCATGATGT
GGGAAATTGTCACCATTGGTGCCGTGCCATATCCTGGTCACAAATCCAAA
GAAATTCCTGGTCTGTTAAACAAAGGTTATCGAATGGagaaaccattgca
ttgcaaaGAAGAATTGTATGAATTGATGTTGCAGTGCTGGagtgaagatg
aaaagaaaagacCGAATTTCAAATTCATTCACCAAAAATTAGAACGAATG
ATTGAGGGACTGtcaaCGTACATCAACTTGGAAGCTTACTCAGACGATTC
GTATTTGACTTTTGGTGCTGGAGATGAAATTTTGGATGAAGATGAGATGA
TCGATATTgaggatgaatgaGGAATGCAATACGTTGCTGATTTAAATATT
GTACACCGTGATTTGGCGTGCAGAAACATTTTAGTTGGTTACAATCGTGT
ATGTAAAGTTGCTGATTTCGGACTGGCTAAAAAAGTTGGAGATAATGGAA
TATATCAACGTACAGAACAGGCAAAACTACCGGTCAAATGGCTACCCCCT
GAATCCATCAAATACGGACGATCATCTCTACAAAGCGATATCTGGTCATA
TGGTATCATGATGTGGGAAATTGTCACCATTGGTGCCGTGCCATATCCTG
GTCACAAATCCAAAGAAATTCCTGGTCTGTTAAACAAAGGTTATCGAATG
GagaaaccattgcattgcaaaGAAGAATTGTATGAATTGATGTTGCAGTG
CTGGagtgaagatgaaaagaaaagacCGAATTTCAAATTCATTCACCAAA
AATTAGAACGAATGATTGAGGGACTGtcaaCGTACATCAACTTGGAAGCT
TACTCAGACGATTCGTATTTGACTTTTGGTGCTGGAGATGAAATTTTGGA
TGAAGATGAGATGATCGATATTgaggatgaatgaGGAATGCAATACGTTG
CTGATTTAAATATTGTACACCGTGATTTGGCGTGCAGAAACATTTTAGTT
GGTTACAATCGTGTATGTAAAGTTGCTGATTTCGGACTGGCTAAAAAAGT
TGGAGATAATGGAATATATCAACGTACAGAACAGGCAAAACTACCGGTCA
AATGGCTACCCCCTGAATCCATCAAATACGGACGATCATCTCTACAAAGC
GATATCTGGTCATATGGTATCATGATGTGGGAAATTGTCACCATTGGTGC
CGTGCCATATCCTGGTCACAAATCCAAAGAAATTCCTGGTCTGTTAAACA
AAGGTTATCGAATGGagaaaccattgcattgcaaaGAAGAATTGTATGAA
TTGATGTTGCAGTGCTGGagtgaagatgaaaagaaaagacCGAATTTCAA
ATTCATTCACCAAAAATTAGAACGAATGATTGAGGGACTGtcaaCGTACA
TCAACTTGGAAGCTTACTCAGACGATTCGTATTTGACTTTTGGTGCTGGA
GATGAAATTTTGGATGAAGATGAGATGATCGATATTgaggatgaatga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044948	XLOC_044948	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00072387-protein	TCONS_00072387-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_77	supercontig	scaffold_77:523138..529503 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.247893	0.112177	0	1.78248	1.40811	1.94623	2.59123	0.285042	1.55253	0	0.395986	19.2811	21.8186	11.2178	7.53641	0.872152	2.01941	0.758306	1.33915	0.961682	0.908753	0.771328	0.83261	0.634187	0.466837	1.67334	1.07711	1.28468	0.89925

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001245	Ser-Thr/Tyr_kinase_cat_dom
IPR020635	Tyr_kinase_cat_dom
IPR008266	Tyr_kinase_AS
IPR000719	Prot_kinase_dom
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0004713	protein tyrosine kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004713	protein tyrosine kinase activity

Blast

[Close]

BLAST of TCONS_00072387 vs. Swiss-Prot (Human)
Match: RET (Proto-oncogene tyrosine-protein kinase receptor Ret OS=Homo sapiens GN=RET PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 8.894e-47
Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = 3

Query:    3 GMQYVADLNIVHRDLACRNILVGYNRVCKVADFGLAKKVGDNGIYQRTEQAKLPVKWLPPESIKYGRSSLQSDIWSYGIMMWEIVTIGAVPYPGHKSKEIPGLLNKGYRMEKPLHCKEELYELMLQCWSEDEKKRPNFKFIHQKLERMIEGLSTYINLEAYSDDSYLTFGAG 518
            GMQY+A++ +VHRDLA RNILV   R  K++DFGL++ V +   Y +  Q ++PVKW+  ES+     + QSD+WS+G+++WEIVT+G  PYPG   + +  LL  G+RME+P +C EE+Y LMLQCW ++  KRP F  I + LE+M+     Y++L A +    L +  G
Sbjct:  861 GMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDLAASTPSDSLIYDDG 1032

The following BLAST results are available for this feature:

BLAST of TCONS_00072387 vs. Swiss-Prot (Human)

BLAST of TCONS_00072387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RET	8.894e-47	44.77	Proto-oncogene tyrosine-protein kinase receptor Re...	[more]

You are here

TCONS_00072387 (transcript) - C. hemisphaerica