TCONS_00072395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072395
Unique NameTCONS_00072395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072395 ID=TCONS_00072395|Name=TCONS_00072395|organism=Clytia hemisphaerica|type=transcript|length=474bp
GAAGAAAACAAAGCAACATCAGAATGAAGATTTGGAGTGTTTTATtactt
ctttctttcttgtctGCCACAGTTTACTGTAAGTATTCGTCATTAAATCA
CCATAAGTCTAAACTCGAAACCAGTCCCTTATTTGCTTTTTTATGACTTT
GAAAGCGAACACGTTTGTATAGCTCTGGGAATGACTGGAGATCACCAAAA
GACACGAAGATACAAAGCTTTAATGTACGTAAAATTATAGATTCTTTTGC
tgttgaaatttcataacaAATAATTTTCTCTCTGCACACAGGTGAAGAAA
GCGAAGATTttgttgaaaacgaaagtgaaagtgaagatTTTGTTGAAGAA
GAACCTTCAGATGACGAGCCTTCGGAAGACGAGCCTTTAGATGACGAGcc
ttcaaaagatgaaaatgaagatgtccAGGATGAAGAAAACCAAAGCGAAG
AAAATGACGAGAATGAACAAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_77:34829..35302-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072395 ID=TCONS_00072395|Name=TCONS_00072395|organism=Clytia hemisphaerica|type=transcript|length=474bp|location=Sequence derived from alignment at scaffold_77:34829..35302- (Clytia hemisphaerica)
GAAGAAAACAAAGCAACATCAGAATGAAGATTTGGAGTGTTTTATTACTT
CTTTCTTTCTTGTCTGCCACAGTTTACTGTAAGTATTCGTCATTAAATCA
CCATAAGTCTAAACTCGAAACCAGTCCCTTATTTGCTTTTTTATGACTTT
GAAAGCGAACACGTTTGTATAGCTCTGGGAATGACTGGAGATCACCAAAA
GACACGAAGATACAAAGCTTTAATGTACGTAAAATTATAGATTCTTTTGC
TGTTGAAATTTCATAACAAATAATTTTCTCTCTGCACACAGGTGAAGAAA
GCGAAGATTTTGTTGAAAACGAAAGTGAAAGTGAAGATTTTGTTGAAGAA
GAACCTTCAGATGACGAGCCTTCGGAAGACGAGCCTTTAGATGACGAGCC
TTCAAAAGATGAAAATGAAGATGTCCAGGATGAAGAAAACCAAAGCGAAG
AAAATGACGAGAATGAACAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044949XLOC_044949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072395-exon-scaffold_77-1575043694:34829..35302TCONS_00072395-exon-scaffold_77-1575043694:34829..35302Clytia hemisphaericaexon
TCONS_00072395-exon-scaffold_77-1510915933:34829..35302TCONS_00072395-exon-scaffold_77-1510915933:34829..35302Clytia hemisphaericaexon
TCONS_00072395-exon-scaffold_77-1491911889:34829..35302TCONS_00072395-exon-scaffold_77-1491911889:34829..35302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:34829..35302 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.142667	3.44243	5.15642	340.322	289.126	19.945	169.53	0.0890382	0	0	0	0	0	0.426947	0	0	0	0.153502	0	0	0.128284	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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