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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072515 ID=TCONS_00072515|Name=TCONS_00072515|organism=Clytia hemisphaerica|type=transcript|length=1238bp
CTAgtataaatttcatttcaatacaGTTTTCATAGATATGCCAGTTATCA
ATTAGCTCTCGTAATCTGTCAATGTCAGCTTTATGCTCAGTAGAAGTTGG
GAGAGCCACAGACGTCAGCTTTATGCTTCGGCAAAATAAGATCTCTGGGG
TATTTATGTTGTGGTTTTCAGCGGTTAATAGAGCTTTCGATATAAGCGAA
TAGTTCTGTTGGTTGTTTGAGGATGCAATGTGGTAGGTGTATTGTGAGGT
CGATGGGTTTGCAAAGAGCTGCTTGACAAGGGTTAGCTTACGTTTCTCCA
GAATATGAGATATGTCTGGGATGTTGTAGACACGGTGAATGTAGTTCCTA
CtgtttttcgaaacattaaatAATGATTTTAAACACGATCTAGCAGTTGT
GTTAAGTTGGAGTAAATCAGATCTTGAAAGATCACATAGCTCTAAGCCAT
ATAGCAGTTTCGGAATAATGATCGAATAGAATATCGTGACAATTGCGTTG
GGGTGGCAGTGTCGTATACCAGCAGAGATCAAGGATGTGGTAGTGGACCA
GAGTTCAGATAGGCGTTGATCCCTGTGAGCATTGAGGCTGAGTTTGTCTC
GTTTCAGGTTCCAGCAGAAACCAAGGTGAGTGAGCTCTCGCTGGGGGAGA
ACTGGTAGGTTGTTCAAGGTAAGCGACGGGTTTGGGAGGTTCGATGTACC
CGAGATGATAAACTGAGTTTTCGTTTTCGACTTAGAGTGGCAGAACTTGA
TACCGTTTTTCTGACCAAATGTTTCACAGTGGGAGAGCATCATCTGAAGT
TGACTAAGACACGGACTGAGCAGGATGATGTCATCAGCATATACAATAAT
TGCTGAGTGGAAGTCATTTGGAAGAAACGTACCAACTTTCAATCGCTTAA
TTGATTCAAGAAGTCCCTCGGTGTAGACGTTATATAGATACGGTGAGAGT
ATACTGCCTTGTCTAACGCCTTGTGATAGGTGGAATGTTTCAGAGTTGTG
TGTTGCATAGTGAATCAAGGCTGAGCCGTTGAGATAGAGTTTGATAAGAA
AAGCCAAAACGATGCCTGGTATGTTTTTTAGAGAAAGTTTCTGGAATAAT
GAAAGCCAACTGCAGCAGTCAAAGGCTTTCTCTGCGTCGAGACTGCATAT
GTAAACGGGAGAGTCCTGGTTGTTGTAGAATTGAACGGTGTCGAGAAGGA
TGGCCTCTGCATGGAGAGTGGACGAGTTGGCTGTGAAA Run BLAST on NCBI protein sequence of TCONS_00072515-protein >TCONS_00072515-protein ID=TCONS_00072515-protein|Name=TCONS_00072515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
FTANSSTLHAEAILLDTVQFYNNQDSPVYICSLDAEKAFDCCSWLSLFQK
LSLKNIPGIVLAFLIKLYLNGSALIHYATHNSETFHLSQGVRQGSILSPY
LYNVYTEGLLESIKRLKVGTFLPNDFHSAIIVYADDIILLSPCLSQLQMM
LSHCETFGQKNGIKFCHSKSKTKTQFIISGTSNLPNPSLTLNNLPVLPQR
ELTHLGFCWNLKRDKLSLNAHRDQRLSELWSTTTSLISAGIRHCHPNAIV
TIFYSIIIPKLLYGLELCDLSRSDLLQLNTTARSCLKSLFNVSKNSRNYI
HRVYNIPDISHILEKRKLTLVKQLFANPSTSQYTYHIASSNNQQNYSLIS
KALLTAENHNINTPEILFCRSIKLTSVALPTSTEHKADIDRLRELIDNWH
IYENCIEMKFIL Run BLAST on NCBI transcript from alignment at scaffold_78:96405..97642 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072515 ID=TCONS_00072515|Name=TCONS_00072515|organism=Clytia hemisphaerica|type=transcript|length=1238bp|location=Sequence derived from alignment at scaffold_78:96405..97642 (Clytia hemisphaerica)
TTTCACAGCCAACTCGTCCACTCTCCATGCAGAGGCCATCCTTCTCGACA
CCGTTCAATTCTACAACAACCAGGACTCTCCCGTTTACATATGCAGTCTC
GACGCAGAGAAAGCCTTTGACTGCTGCAGTTGGCTTTCATTATTCCAGAA
ACTTTCTCTAAAAAACATACCAGGCATCGTTTTGGCTTTTCTTATCAAAC
TCTATCTCAACGGCTCAGCCTTGATTCACTATGCAACACACAACTCTGAA
ACATTCCACCTATCACAAGGCGTTAGACAAGGCAGTATACTCTCACCGTA
TCTATATAACGTCTACACCGAGGGACTTCTTGAATCAATTAAGCGATTGA
AAGTTGGTACGTTTCTTCCAAATGACTTCCACTCAGCAATTATTGTATAT
GCTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTCAACTTCAGATGAT
GCTCTCCCACTGTGAAACATTTGGTCAGAAAAACGGTATCAAGTTCTGCC
ACTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGGGTACATCGAAC
CTCCCAAACCCGTCGCTTACCTTGAACAACCTACCAGTTCTCCCCCAGCG
AGAGCTCACTCACCTTGGTTTCTGCTGGAACCTGAAACGAGACAAACTCA
GCCTCAATGCTCACAGGGATCAACGCCTATCTGAACTCTGGTCCACTACC
ACATCCTTGATCTCTGCTGGTATACGACACTGCCACCCCAACGCAATTGT
CACGATATTCTATTCGATCATTATTCCGAAACTGCTATATGGCTTAGAGC
TATGTGATCTTTCAAGATCTGATTTACTCCAACTTAACACAACTGCTAGA
TCGTGTTTAAAATCATTatttaatgtttcgaaaaacaGTAGGAACTACAT
TCACCGTGTCTACAACATCCCAGACATATCTCATATTCTGGAGAAACGTA
AGCTAACCCTTGTCAAGCAGCTCTTTGCAAACCCATCGACCTCACAATAC
ACCTACCACATTGCATCCTCAAACAACCAACAGAACTATTCGCTTATATC
GAAAGCTCTATTAACCGCTGAAAACCACAACATAAATACCCCAGAGATCT
TATTTTGCCGAAGCATAAAGCTGACGTCTGTGGCTCTCCCAACTTCTACT
GAGCATAAAGCTGACATTGACAGATTACGAGAGCTAATTGATAACTGGCA
TATCTATGAAAACtgtattgaaatgaaatttatacTAG Coding sequence (CDS) from alignment at scaffold_78:96405..97642 >TCONS_00072515 ID=TCONS_00072515|Name=TCONS_00072515|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_78:96405..97642 (Clytia hemisphaerica)
TTCACAGCCAACTCGTCCACTCTCCATGCAGAGGCCATCCTTCTCGACAC
CGTTCAATTCTACAACAACCAGGACTCTCCCGTTTACATATGCAGTCTCG
ACGCAGAGAAAGCCTTTGACTGCTGCAGTTGGCTTTCATTATTCCAGAAA
CTTTCTCTAAAAAACATACCAGGCATCGTTTTGGCTTTTCTTATCAAACT
CTATCTCAACGGCTCAGCCTTGATTCACTATGCAACACACAACTCTGAAA
CATTCCACCTATCACAAGGCGTTAGACAAGGCAGTATACTCTCACCGTAT
CTATATAACGTCTACACCGAGGGACTTCTTGAATCAATTAAGCGATTGAA
AGTTGGTACGTTTCTTCCAAATGACTTCCACTCAGCAATTATTGTATATG
CTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTCAACTTCAGATGATG
CTCTCCCACTGTGAAACATTTGGTCAGAAAAACGGTATCAAGTTCTGCCA
CTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGGGTACATCGAACC
TCCCAAACCCGTCGCTTACCTTGAACAACCTACCAGTTCTCCCCCAGCGA
GAGCTCACTCACCTTGGTTTCTGCTGGAACCTGAAACGAGACAAACTCAG
CCTCAATGCTCACAGGGATCAACGCCTATCTGAACTCTGGTCCACTACCA
CATCCTTGATCTCTGCTGGTATACGACACTGCCACCCCAACGCAATTGTC
ACGATATTCTATTCGATCATTATTCCGAAACTGCTATATGGCTTAGAGCT
ATGTGATCTTTCAAGATCTGATTTACTCCAACTTAACACAACTGCTAGAT
CGTGTTTAAAATCATTatttaatgtttcgaaaaacaGTAGGAACTACATT
CACCGTGTCTACAACATCCCAGACATATCTCATATTCTGGAGAAACGTAA
GCTAACCCTTGTCAAGCAGCTCTTTGCAAACCCATCGACCTCACAATACA
CCTACCACATTGCATCCTCAAACAACCAACAGAACTATTCGCTTATATCG
AAAGCTCTATTAACCGCTGAAAACCACAACATAAATACCCCAGAGATCTT
ATTTTGCCGAAGCATAAAGCTGACGTCTGTGGCTCTCCCAACTTCTACTG
AGCATAAAGCTGACATTGACAGATTACGAGAGCTAATTGATAACTGGCAT
ATCTATGAAAACtgtattgaaatgaaatttatacTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072515-exon-scaffold_78-1491911889:96405..97642 | TCONS_00072515-exon-scaffold_78-1491911889:96405..97642 | Clytia hemisphaerica | exon |
| TCONS_00072515-exon-scaffold_78-1510915933:96405..97642 | TCONS_00072515-exon-scaffold_78-1510915933:96405..97642 | Clytia hemisphaerica | exon |
| TCONS_00072515-exon-scaffold_78-1575043694:96405..97642 | TCONS_00072515-exon-scaffold_78-1575043694:96405..97642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:96405..97642 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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