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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072538 ID=TCONS_00072538|Name=TCONS_00072538|organism=Clytia hemisphaerica|type=transcript|length=2669bp
CACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGATGAA
GGTCAAGGAGTTCAAATATCGGTTGAAGAAACCTGTTCTTCAAAGATTCC
GATTGATGAAGAGCTGGAAACATGCAACGCTGATAACGCCTAACGACCTT
CATCAATGGGGACAGTCCTCTCATATCCAAGGGTTGATCAAATTCCTATC
AAAAATATCGTATACATCAAAACCAAAAATGGACAAAGTGACTATTTCGC
AAGTAAGGTTTTCTCTTTGAATAGTATTTActatcttttataagaatatc
agggtgaaaattggcaaaatcgtaagaataccctaagaatgcCCTCCAGG
GTTTTCATAgattttgataagcaaaatagTCGTTTTCTACAACTGTTTTT
TTTCGTATGACTTAAATTACGTTTTTCCAATTAgtgatttcatttctttt
ttcgaGAAGCCATTGTTAAAGTAATTTTGTTATCTCTATTTCTTCAGGCC
TGTGACATTCGCAATTTCCTAATGATCAGCATAACAATAATCAATAGCGC
AAGGGCTTCCAATCTGATCAACATTTCCTTACAAGACATCACCAAAGCAA
TCCCGACAACGCCCAACGATGGTTTCTGTGGGTTCGAATTTTCTTCGTCC
AAGTACAAAACGTGTTTAATCTACGGAGACAAAGTGATGTGGGTTAACCA
GGAACTCTACGAATTCATCACTGGTTACATCACTTTCATCAGGCCCTTGA
TCGCTCCCAAAGATTCAACATTGTTATTTACGAGTTCTTCAAAGAAGTCA
AAGATACGGGAAGAAGGAGATGAAGAGAAAGACCCGGGACAGATGGAACA
CGCGATGATTTCGTCAGCATTCACAAGATCGTTCCAAAAAGCTGATGTAT
TTGGTTCCACGGACAACAACAACAGGGTTTCTCCGTCACGCCTCCGCTGC
GCCGCCTGCACGGAGCTTGTTGGTGTTGATGGCGAAAACAGCGACGATGT
GGCCTTGCATTTCATAAAACACAGGTATAAATTCAGTTTCCGTTTGCAAT
ACTTGCCTCTGTCTGTTCTTTTTATCAACCATCTCTGTCCGAGAGAATAT
GTCTGATTTGGCAGGTTTAGATTTTTTAGTCAGTTTGTCATTCATGCAAC
GTTTGCTTTTACAGACCATCCACATCGCGGAAGTATTATACCGCTTATTG
GGAAAACAGAGAGGCACTTCGTATTTCAATGAAATGCTATTCTAAGTTTC
TTCCAAACGAAACGACGGCACGCATAGTGGCTGAACGAGATCGCATGCTC
TCCAAACAAAAGCCACCGACGAGAAAAGACATGCAAacatggtttacaaa
aatggcCAAGCTGTTGCAGAGCTCGACCGGGGAGAAGTTTACGGACGAAG
GCCTTGTCCAATGCTTCAATGATTTGGACGACGACGACGTTCATTGTGAG
TTTATGTTTAAACCCATTAAATTAATTAATATGAATTTACATGAACTGTT
TTACATCTGGAACTGAACAAAATAATGTGTGCTAGTCTGAATTACAATTC
GGGATATAGTACAGTCTGTGTTGATATCAATTTGTAATTCTCTATTTAAT
GTGTAATTTGTGTCatgtttgtttcaaatttttagttgaCAAGTCTCCGG
ATGTTCCATCAACAGCACAAAGTTCCATCAAAGTACCAGGACCTTTTCAT
CGTGGCTTGAAAGGAACTTCTACTTCAACTTCTACTCCAAAAAGAAAGGC
ACCAGAAACTGGTAAGGTACCTTTTGTATCAAATTACcattgaattttat
tatttataccTGGCATTGGTGTCCGAGAATCCACCCAAAATGCACATCAA
TATATGTCTGACTggtctttcttttttaaagtgCTCATACTACATAAAAG
GCTCTCATTAAACTTATTAATTCTTTTCTGCTCATTCAGTACCTGCTAAC
CCTGACGAATTGACAAAAAACGCTAACATCAACGTTCCAAGTTCATCGAA
AAAGGCACCAGAAACTGGTAAGTTACCTATTGTATGAAATTACCatgaaa
tttcattatttttacccGGCATAGGTGTCCGAGAATCCACCCAAAATACA
CATCAATCTATGTCTGACTGGTCTTTTTTTAAAGTGCTCATACTACATAA
AAGGCTCTCATTAAACTTATCTATTTTTTTCTTGCTCATTCAGTACCTAA
AAAACTCATACAATTTGTTTGCACCAATTATCAACTGTTTTTGAAATCTA
TATAACTACCTTTTCAGATGTTAGTGAAGTTTACCCACTATTAGGTCTAA
GATGGAATATGGTCTTAGGTAGAATAAGAAGGGgttggatttttttcaaa
agctaaTCGCCAGGGGTTGGATTAAAAATGTCCCGTGTAGAAAAATTGAC
CGGAGGAAGTTTTGCAAATATTCTTTCGAAAATATAATCGACTACTTAGT
CATTAAAGGACGAGATATTTAATGAGATgtcttttttattattaaacGCG
AAAAAAAGAATATACAAAGCTATCTGCCTTATGAgcagatttttgatttt
tgtttataCTCTCATTGCCAATCAGTTTgctgatatttttcaagttgacg
ataatATGAAATacttgaatttcattttttccttaTGTTTAGAAGTCAGC
AAATTTTGATGGTTTGTCG Run BLAST on NCBI transcript from alignment at scaffold_8:36162..38961+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072538 ID=TCONS_00072538|Name=TCONS_00072538|organism=Clytia hemisphaerica|type=transcript|length=2800bp|location=Sequence derived from alignment at scaffold_8:36162..38961+ (Clytia hemisphaerica)
CACGTATATGTCGGTATGTTGACGGATGAAAGGGAACTTCTTCTGATGAA
GGTCAAGGAGTTCAAATATCGGTTGAAGAAACCTGTTCTTCAAAGGTAAA
TTGCAGTTCTTTTATAAGTCTTCCTGTCTCTCCGTTTAAATCTTGGAAAA
AAGGCTTGTTCAAAGCAAGTTATCTTTTCAGACCCATTTTTGGAGTTTAT
TTAATGCTCGTCGAACCTTTGTTTAGATTCCGATTGATGAAGAGCTGGAA
ACATGCAACGCTGATAACGCCTAACGACCTTCATCAATGGGGACAGTCCT
CTCATATCCAAGGGTTGATCAAATTCCTATCAAAAATATCGTATACATCA
AAACCAAAAATGGACAAAGTGACTATTTCGCAAGTAAGGTTTTCTCTTTG
AATAGTATTTActatcttttataagaatatcagggtgaaaattggcaaaa
tcgtaagaataccctaagaatgcCCTCCAGGGTTTTCATAgattttgata
agcaaaatagTCGTTTTCTACAACTGTTTTTTTTCGTATGACTTAAATTA
CGTTTTTCCAATTAgtgatttcatttcttttttcgaGAAGCCATTGTTAA
AGTAATTTTGTTATCTCTATTTCTTCAGGCCTGTGACATTCGCAATTTCC
TAATGATCAGCATAACAATAATCAATAGCGCAAGGGCTTCCAATCTGATC
AACATTTCCTTACAAGACATCACCAAAGCAATCCCGACAACGCCCAACGA
TGGTTTCTGTGGGTTCGAATTTTCTTCGTCCAAGTACAAAACGTGTTTAA
TCTACGGAGACAAAGTGATGTGGGTTAACCAGGAACTCTACGAATTCATC
ACTGGTTACATCACTTTCATCAGGCCCTTGATCGCTCCCAAAGATTCAAC
ATTGTTATTTACGAGTTCTTCAAAGAAGTCAAAGATACGGGAAGAAGGAG
ATGAAGAGAAAGACCCGGGACAGATGGAACACGCGATGATTTCGTCAGCA
TTCACAAGATCGTTCCAAAAAGCTGATGTATTTGGTTCCACGGACAACAA
CAACAGGGTTTCTCCGTCACGCCTCCGCTGCGCCGCCTGCACGGAGCTTG
TTGGTGTTGATGGCGAAAACAGCGACGATGTGGCCTTGCATTTCATAAAA
CACAGGTATAAATTCAGTTTCCGTTTGCAATACTTGCCTCTGTCTGTTCT
TTTTATCAACCATCTCTGTCCGAGAGAATATGTCTGATTTGGCAGGTTTA
GATTTTTTAGTCAGTTTGTCATTCATGCAACGTTTGCTTTTACAGACCAT
CCACATCGCGGAAGTATTATACCGCTTATTGGGAAAACAGAGAGGCACTT
CGTATTTCAATGAAATGCTATTCTAAGTTTCTTCCAAACGAAACGACGGC
ACGCATAGTGGCTGAACGAGATCGCATGCTCTCCAAACAAAAGCCACCGA
CGAGAAAAGACATGCAAacatggtttacaaaaatggcCAAGCTGTTGCAG
AGCTCGACCGGGGAGAAGTTTACGGACGAAGGCCTTGTCCAATGCTTCAA
TGATTTGGACGACGACGACGTTCATTGTGAGTTTATGTTTAAACCCATTA
AATTAATTAATATGAATTTACATGAACTGTTTTACATCTGGAACTGAACA
AAATAATGTGTGCTAGTCTGAATTACAATTCGGGATATAGTACAGTCTGT
GTTGATATCAATTTGTAATTCTCTATTTAATGTGTAATTTGTGTCatgtt
tgtttcaaatttttagttgaCAAGTCTCCGGATGTTCCATCAACAGCACA
AAGTTCCATCAAAGTACCAGGACCTTTTCATCGTGGCTTGAAAGGAACTT
CTACTTCAACTTCTACTCCAAAAAGAAAGGCACCAGAAACTGGTAAGGTA
CCTTTTGTATCAAATTACcattgaattttattatttataccTGGCATTGG
TGTCCGAGAATCCACCCAAAATGCACATCAATATATGTCTGACTggtctt
tcttttttaaagtgCTCATACTACATAAAAGGCTCTCATTAAACTTATTA
ATTCTTTTCTGCTCATTCAGTACCTGCTAACCCTGACGAATTGACAAAAA
ACGCTAACATCAACGTTCCAAGTTCATCGAAAAAGGCACCAGAAACTGGT
AAGTTACCTATTGTATGAAATTACCatgaaatttcattatttttacccGG
CATAGGTGTCCGAGAATCCACCCAAAATACACATCAATCTATGTCTGACT
GGTCTTTTTTTAAAGTGCTCATACTACATAAAAGGCTCTCATTAAACTTA
TCTATTTTTTTCTTGCTCATTCAGTACCTAAAAAACTCATACAATTTGTT
TGCACCAATTATCAACTGTTTTTGAAATCTATATAACTACCTTTTCAGAT
GTTAGTGAAGTTTACCCACTATTAGGTCTAAGATGGAATATGGTCTTAGG
TAGAATAAGAAGGGgttggatttttttcaaaagctaaTCGCCAGGGGTTG
GATTAAAAATGTCCCGTGTAGAAAAATTGACCGGAGGAAGTTTTGCAAAT
ATTCTTTCGAAAATATAATCGACTACTTAGTCATTAAAGGACGAGATATT
TAATGAGATgtcttttttattattaaacGCGAAAAAAAGAATATACAAAG
CTATCTGCCTTATGAgcagatttttgatttttgtttataCTCTCATTGCC
AATCAGTTTgctgatatttttcaagttgacgataatATGAAATacttgaa
tttcattttttccttaTGTTTAGAAGTCAGCAAATTTTGATGGTTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072538-exon-scaffold_8-1491911889:36162..36256 | TCONS_00072538-exon-scaffold_8-1491911889:36162..36256 | Clytia hemisphaerica | exon |
| TCONS_00072538-exon-scaffold_8-1510915933:36162..36256 | TCONS_00072538-exon-scaffold_8-1510915933:36162..36256 | Clytia hemisphaerica | exon |
| TCONS_00072538-exon-scaffold_8-1575043694:36162..36256 | TCONS_00072538-exon-scaffold_8-1575043694:36162..36256 | Clytia hemisphaerica | exon |
| TCONS_00072538-exon-scaffold_8-1491911889:36388..38961 | TCONS_00072538-exon-scaffold_8-1491911889:36388..38961 | Clytia hemisphaerica | exon |
| TCONS_00072538-exon-scaffold_8-1510915933:36388..38961 | TCONS_00072538-exon-scaffold_8-1510915933:36388..38961 | Clytia hemisphaerica | exon |
| TCONS_00072538-exon-scaffold_8-1575043694:36388..38961 | TCONS_00072538-exon-scaffold_8-1575043694:36388..38961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:36162..38961 + |
Blast
The following BLAST results are available for this feature:
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