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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072612 ID=TCONS_00072612|Name=TCONS_00072612|organism=Clytia hemisphaerica|type=transcript|length=1324bp
ggcagacactgtcctgatatgaaatatgtgtctgatatgaaacgggaaca
gttttgttaaaataaaacctttaagaacaCACAAGCTGagcacaaaataa
aaatactgcttaaaaatcttctttagTAAACAAGTTATAGAAATACAATA
CTAATCATGTCCACCATTCTCATTCTATTATCTTTAGCTCTTAAAATATT
TGAGTTAAACGGATGAAATATTCTTTGTCTCATGATATGCTTTTACAATA
AGTGGTCACATTTCAAATATGGTGTCACCAAAAAATTATGTCTGGCCAGT
ATAATGTTTTAGCAATGATTCGGTTGTCGGTGTATGTTAGAATCGATCCA
ACCCATTGTAGTGTAGTACCCATAATCTCTCCATTATATGAAATGTCTTT
CAAGCCAGCATATCAAACTACTTTTGTTTCGGATTCGGTGTCTGGTTAGA
AGGTAACATTGAATTACTCTATCTTGTTAGGATGAAATACTCAATCAGTT
CAATGGCACTGTGGTTACTGATTATTTACTGATACAGTTACTGATATTGA
TCAaaccaatacaccttttcgatcgtagccgccaattgccgcgcgggcat
tttttgtccgttttaccaccctaaaaccgtccaatcttttttttcgcacc
taaagacaatagaaaaacctggaaaaaaaggattggatcgactttagggt
ggtaaattaaataataaagtggcacgcgcctgaccgcacggctacagtcg
aaaaggtgtattagttCAATCCCAGCATGCATCATACGACGTCAATCTCG
CACTTTGATAACGTAATATGATTGTTGTTTTGACGTACCAGCTCCTCACA
CCGAAATTCTTTTTCCAAATTCTTCATTCTTTCGTTTTCTCTCTTCAATT
CGCACCACCCTCATTTGTCGGTATCACTTCATATTTTGAATTTGCTTTTA
CCGCCCCAAATACGCCATTCTTAAGTTTATCAAGCGCCCTCTCTTGATGG
ACGTGGTCTGAATCAGACTCACTATCAGGAACAGTCGTAGTAGGTGTAGC
TTTCTGTTGTTGAATCCCGTTTGATGGCGTTGTTTTCTTTGGGAGATTTC
CGTTTTGTTGAGTTTGTGAGTCTTGAGGATCGTTTGAGGAAGGTTGTCTT
TGCAAGCCGTCCATTTTCGAATATTTCCCTTTACTACCTTCGTTACCCAT
GATGCATCAGTTTTTGTTTATTACTTTTTCACTGAAAtggtaaatataag
aaaatgCTTTTAGATCAATAAGGGTTGATATCAGttctaaaatctcagac
atcgtGTAGTTTAGTGACGTGGTG Run BLAST on NCBI protein sequence of TCONS_00072612-protein >TCONS_00072612-protein ID=TCONS_00072612-protein|Name=TCONS_00072612-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MGNEGSKGKYSKMDGLQRQPSSNDPQDSQTQQNGNLPKKTTPSNGIQQQK
ATPTTTVPDSESDSDHVHQERALDKLKNGVFGAVKANSKYEVIPTNEGGA
N Run BLAST on NCBI transcript from alignment at scaffold_8:451002..452325 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072612 ID=TCONS_00072612|Name=TCONS_00072612|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at scaffold_8:451002..452325 (Clytia hemisphaerica)
CACCACGTCACTAAACTACacgatgtctgagattttagaaCTGATATCAA
CCCTTATTGATCTAAAAGcattttcttatatttaccaTTTCAGTGAAAAA
GTAATAAACAAAAACTGATGCATCATGGGTAACGAAGGTAGTAAAGGGAA
ATATTCGAAAATGGACGGCTTGCAAAGACAACCTTCCTCAAACGATCCTC
AAGACTCACAAACTCAACAAAACGGAAATCTCCCAAAGAAAACAACGCCA
TCAAACGGGATTCAACAACAGAAAGCTACACCTACTACGACTGTTCCTGA
TAGTGAGTCTGATTCAGACCACGTCCATCAAGAGAGGGCGCTTGATAAAC
TTAAGAATGGCGTATTTGGGGCGGTAAAAGCAAATTCAAAATATGAAGTG
ATACCGACAAATGAGGGTGGTGCGAATTGAAGAGAGAAAACGAAAGAATG
AAGAATTTGGAAAAAGAATTTCGGTGTGAGGAGCTGGTACGTCAAAACAA
CAATCATATTACGTTATCAAAGTGCGAGATTGACGTCGTATGATGCATGC
TGGGATTGaactaatacaccttttcgactgtagccgtgcggtcaggcgcg
tgccactttattatttaatttaccaccctaaagtcgatccaatccttttt
ttccaggtttttctattgtctttaggtgcgaaaaaaaagattggacggtt
ttagggtggtaaaacggacaaaaaatgcccgcgcggcaattggcggctac
gatcgaaaaggtgtattggttTGATCAATATCAGTAACTGTATCAGTAAA
TAATCAGTAACCACAGTGCCATTGAACTGATTGAGTATTTCATCCTAACA
AGATAGAGTAATTCAATGTTACCTTCTAACCAGACACCGAATCCGAAACA
AAAGTAGTTTGATATGCTGGCTTGAAAGACATTTCATATAATGGAGAGAT
TATGGGTACTACACTACAATGGGTTGGATCGATTCTAACATACACCGACA
ACCGAATCATTGCTAAAACATTATACTGGCCAGACATAATTTTTTGGTGA
CACCATATTTGAAATGTGACCACTTATTGTAAAAGCATATCATGAGACAA
AGAATATTTCATCCGTTTAACTCAAATATTTTAAGAGCTAAAGATAATAG
AATGAGAATGGTGGACATGATTAGTATTGTATTTCTATAACTTGTTTAct
aaagaagatttttaagcagtatttttattttgtgctCAGCTTGTGtgttc
ttaaaggttttattttaacaaaactgttcccgtttcatatcagacacata
tttcatatcaggacagtgtctgcc Coding sequence (CDS) from alignment at scaffold_8:451002..452325 >TCONS_00072612 ID=TCONS_00072612|Name=TCONS_00072612|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_8:451002..452325 (Clytia hemisphaerica)
ATGGGTAACGAAGGTAGTAAAGGGAAATATTCGAAAATGGACGGCTTGCA
AAGACAACCTTCCTCAAACGATCCTCAAGACTCACAAACTCAACAAAACG
GAAATCTCCCAAAGAAAACAACGCCATCAAACGGGATTCAACAACAGAAA
GCTACACCTACTACGACTGTTCCTGATAGTGAGTCTGATTCAGACCACGT
CCATCAAGAGAGGGCGCTTGATAAACTTAAGAATGGCGTATTTGGGGCGG
TAAAAGCAAATTCAAAATATGAAGTGATACCGACAAATGAGGGTGGTGCG
AATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072612-exon-scaffold_8-1491911889:451002..452325 | TCONS_00072612-exon-scaffold_8-1491911889:451002..452325 | Clytia hemisphaerica | exon |
| TCONS_00072612-exon-scaffold_8-1510915933:451002..452325 | TCONS_00072612-exon-scaffold_8-1510915933:451002..452325 | Clytia hemisphaerica | exon |
| TCONS_00072612-exon-scaffold_8-1575043694:451002..452325 | TCONS_00072612-exon-scaffold_8-1575043694:451002..452325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:451002..452325 . |
Blast
The following BLAST results are available for this feature:
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