TCONS_00072699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072699
Unique NameTCONS_00072699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072699 ID=TCONS_00072699|Name=TCONS_00072699|organism=Clytia hemisphaerica|type=transcript|length=373bp
TTAGAtataatacaaaagaaaaagtgtCAGTGGAAGCTGTTACTGGCTGG
GTTACAAAAGCTTTTGACAACAATGCCACACCTTATTTTGCAGTTATCAT
TTGCTTATGGGGTACTGTATTTTGTGAATATTGGAAAAGAACGAATGCTT
TGTTAGCCTATAAATGGGATGTGGATTTGTTTGAAGAACAGGAAACGAAC
AGACCACAGTTTATAGGAACTACTGTAAAGAAGAACCCTGTATCAGGAGA
ATATGAACCTCATTATCCAAAGTGGCGTAAAGTGTTGAAGTCAATGGGGT
CAATgagtattattttatttatgNATTATCCAAAGTGGCGTAAAGCCGTG
AAGTCAATGGGGTCAATGAGCAT
Run BLAST on NCBI

protein sequence of TCONS_00072699-protein

>TCONS_00072699-protein ID=TCONS_00072699-protein|Name=TCONS_00072699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
RYNTKEKVSVEAVTGWVTKAFDNNATPYFAVIICLWGTVFCEYWKRTNAL
LAYKWDVDLFEEQETNRPQFIGTTVKKNPVSGEYEPHYPKWRKVLKSMGS
MSIILFMXYPKWRKAVKSMGSMS
Run BLAST on NCBI

transcript from alignment at scaffold_82:364389..365699+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072699 ID=TCONS_00072699|Name=TCONS_00072699|organism=Clytia hemisphaerica|type=transcript|length=1311bp|location=Sequence derived from alignment at scaffold_82:364389..365699+ (Clytia hemisphaerica)
TTAGAtataatacaaaagaaaaagtgtCAGTGGAAGCTGTTACTGGCTGG
GTTACAAAAGCTTTTGACAACAATGCCACACCTTATTTTGCAGTTATCAT
TTGCTTATGGGGTAAGGAAAATATTACAAATGGTGAAACCTTCAAAGATG
GTATAAGCCAATATATCATTAATGATGTTTGctacaatttgattttttcg
agaAGGAAAATCCAAGCGAGATCTTGCTAGTCTGAAGAGATATTACTAGA
TGTTTTTATTCTGACTTAAACAGCTTTGAGCTTTCTTTGAACAACGATAA
GAATTGTGAGATATTGCTAGTCTGTATTTAGAGCAAGAATATGTGGTCAG
GTCAATGattgatttctttgatttttccaTAGGTACTGTATTTTGTGAAT
ATTGGAAAAGAACGAATGCTTTGTTAGCCTATAAATGGGATGTGGATTTG
TTTGAAGAACAGGTAGTTAacaacctgataacagattgcatattttctgg
cccagtacgctgaagctctaaagaagtGGGCGAAATTTAGcaatctttag
agcttcagcgtatcGCTTTAAGAAAGCTCAACAgcgctgttatcaggtta
ttaTTGATTCGCTCTCATATAATCgatagaaaaataaattgatcCAACAA
TTTAATATTACAATTTCATACTCTGGCAAACCAATAGATAGAGGTTTATG
AGCTTTCATAAATACCGTAGTCTCTCAATCTTATTACCTTTAgtatcttt
ttttctttacatttaGGAAACGAACAGACCACAGTTTATAGGAACTACTG
TAAAGAAGGTAATTGTTTCCTTCTTGAAATTCCTCAATTATGGTAGCGAC
CGTAGTGCTAAGGTAGAGGCTACGATGTGCACGGTCGTGTTGGTTTAATC
CCCGGTCGGGTTCTACAAAAGATTTCTTACCTAGTACTTATTGCCTGATA
CCTTTAATAGAAGAATCAAGGGTAAAATGGAGTAATCCAGGAAAAAAGAG
TGTCGCCCTCCCTTACCTTCGCGTGGATAAATATCGAAAGAGAAGCCTTC
GGGTCGACTCGGACTGCGATCGCCATGGTTTGCTTTTGTTCATTATTTAG
CTCTCAATAATTGTCAAgatatattcttattttcaaacAATCGTGTTTCA
ATGCAACCTTTTCTGTTTCAGAACCCTGTATCAGGAGAATATGAACCTCA
TTATCCAAAGTGGCGTAAAGTGTTGAAGTCAATGGGGTCAATgagtatta
ttttatttatgNATTATCCAAAGTGGCGTAAAGCCGTGAAGTCAATGGGG
TCAATGAGCAT

Coding sequence (CDS) from alignment at scaffold_82:364389..365699+

>TCONS_00072699 ID=TCONS_00072699|Name=TCONS_00072699|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_82:364389..365699+ (Clytia hemisphaerica)
AGAtataatacaaaagaaaaagtgtCAGTGGAAGCTGTTACTGGCTGGGT
TACAAAAGCTTTTGACAACAATGCCACACCTTATTTTGCAGTTATCATTT
GCTTATGGGGTACTGTATTTTGTGAATATTGGAAAAGAACGAATGCTTTG
TTAGCCTATAAATGGGATGTGGATTTGTTTGAAGAACAGGAAACGAACAG
ACCACAGTTTATAGGAACTACTGTAAAGAAGAACCCTGTATCAGGAGAAT
ATGAACCTCATTATCCAAAGTGGCGTAAAGTGTTGAAGTCAATGGGGTCA
ATgagtattattttatttatgNATTATCCAAAGTGGCGTAAAGCCGTGAA
GTCAATGGGGTCAATGAGCAGAtataatacaaaagaaaaagtgtCAGTGG
AAGCTGTTACTGGCTGGGTTACAAAAGCTTTTGACAACAATGCCACACCT
TATTTTGCAGTTATCATTTGCTTATGGGGTACTGTATTTTGTGAATATTG
GAAAAGAACGAATGCTTTGTTAGCCTATAAATGGGATGTGGATTTGTTTG
AAGAACAGGAAACGAACAGACCACAGTTTATAGGAACTACTGTAAAGAAG
AACCCTGTATCAGGAGAATATGAACCTCATTATCCAAAGTGGCGTAAAGT
GTTGAAGTCAATGGGGTCAATgagtattattttatttatgNATTATCCAA
AGTGGCGTAAAGCCGTGAAGTCAATGGGGTCAATGAGCAGAtataataca
aaagaaaaagtgtCAGTGGAAGCTGTTACTGGCTGGGTTACAAAAGCTTT
TGACAACAATGCCACACCTTATTTTGCAGTTATCATTTGCTTATGGGGTA
CTGTATTTTGTGAATATTGGAAAAGAACGAATGCTTTGTTAGCCTATAAA
TGGGATGTGGATTTGTTTGAAGAACAGGAAACGAACAGACCACAGTTTAT
AGGAACTACTGTAAAGAAGAACCCTGTATCAGGAGAATATGAACCTCATT
ATCCAAAGTGGCGTAAAGTGTTGAAGTCAATGGGGTCAATgagtattatt
ttatttatgNATTATCCAAAGTGGCGTAAAGCCGTGAAGTCAATGGGGTC
AATGAGCAGAtataatacaaaagaaaaagtgtCAGTGGAAGCTGTTACTG
GCTGGGTTACAAAAGCTTTTGACAACAATGCCACACCTTATTTTGCAGTT
ATCATTTGCTTATGGGGTACTGTATTTTGTGAATATTGGAAAAGAACGAA
TGCTTTGTTAGCCTATAAATGGGATGTGGATTTGTTTGAAGAACAGGAAA
CGAACAGACCACAGTTTATAGGAACTACTGTAAAGAAGAACCCTGTATCA
GGAGAATATGAACCTCATTATCCAAAGTGGCGTAAAGTGTTGAAGTCAAT
GGGGTCAATgagtattattttatttatgNATTATCCAAAGTGGCGTAAAG
CCGTGAAGTCAATGGGGTCAATGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045124XLOC_045124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072699-exon-scaffold_82-1491911889:364389..364499TCONS_00072699-exon-scaffold_82-1491911889:364389..364499Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1510915933:364389..364499TCONS_00072699-exon-scaffold_82-1510915933:364389..364499Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1575043694:364389..364499TCONS_00072699-exon-scaffold_82-1575043694:364389..364499Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1491911889:364771..364850TCONS_00072699-exon-scaffold_82-1491911889:364771..364850Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1510915933:364771..364850TCONS_00072699-exon-scaffold_82-1510915933:364771..364850Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1575043694:364771..364850TCONS_00072699-exon-scaffold_82-1575043694:364771..364850Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1491911889:365155..365196TCONS_00072699-exon-scaffold_82-1491911889:365155..365196Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1510915933:365155..365196TCONS_00072699-exon-scaffold_82-1510915933:365155..365196Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1575043694:365155..365196TCONS_00072699-exon-scaffold_82-1575043694:365155..365196Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1491911889:365560..365699TCONS_00072699-exon-scaffold_82-1491911889:365560..365699Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1510915933:365560..365699TCONS_00072699-exon-scaffold_82-1510915933:365560..365699Clytia hemisphaericaexon
TCONS_00072699-exon-scaffold_82-1575043694:365560..365699TCONS_00072699-exon-scaffold_82-1575043694:365560..365699Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072699-proteinTCONS_00072699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:364389..365699 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.22045	8.6491	2.44937	2.87559	18.0873	12.9096	10.0124	9.6339	8.93246	10.3869	14.4652	8.35624	5.61104	2.39061	1.84257	3.2956	3.57272	3.66192	5.05914	5.77531	3.55568	7.03937	3.72056	4.96104	5.34201	9.94981	5.04268	4.43197	2.88128	1.71242
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007632Anoctamin
Blast
[Close]
BLAST of TCONS_00072699 vs. Swiss-Prot (Human)
Match: ANO3 (Anoctamin-3 OS=Homo sapiens GN=ANO3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.652e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 3 
Query:   18 EKVSVEAVTGWVTKAFDNNATPYFAVIICLWGTVFCEYWKRTNALLAYKWD-VDLFEEQETNRPQFIGTTVKK---NPVSGEYEPHYPKWRKVLKSMGSMSIILFM 323
            ++++   +   VT  FDN  T +FA+ + +W TVF E+WKR  ++L Y WD ++  EE+ET RPQF     K    NP++G+ EPH P   KV + + S+S I FM
Sbjct:  452 QRLNDSCIYAKVTYLFDNGGTVFFAIFMAIWATVFLEFWKRRRSILTYTWDLIEWEEEEETLRPQFEAKYYKMEIVNPITGKPEPHQPSSDKVTRLLVSVSGIFFM 557
The following BLAST results are available for this feature:
BLAST of TCONS_00072699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANO39.652e-1740.57Anoctamin-3 OS=Homo sapiens GN=ANO3 PE=1 SV=2[more]
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