TCONS_00072763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072763
Unique NameTCONS_00072763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length625

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072763 ID=TCONS_00072763|Name=TCONS_00072763|organism=Clytia hemisphaerica|type=transcript|length=625bp
GAAAATGATTGATATGGTCCACTGAGGTCGATCTGTGAGTTATAAAATGC
CGGAGCAACTGTTAGACTTGAAGGTGGAATTGGTCCCATGATGGCTTCAA
TCTGCTTCTTGAGGATGATACGACATTTTGTGCATGTTCTTCTGATTAGC
TTGACAAGCGCGCGGCCATTAATGATGTACACTTTCTTTAGAATTTCTCT
GATAGTAGTTTCAATGCCAGAATGACATGCAGAGCTGTTCCAGTGGATGT
CATACACGATGCTGAAGGCTATGGGAGAGTTTCCATCGATTATAGGTACA
CAAAAGGATGAGCTGGATAGGTCCAACATGGCAGATGTGAATCGTCCGAC
GATTGTTGTCTTTGTATCTGATAGGATGCGTCCATTGTATGTTAGTATCC
CATCTTTAAGTGTTGAAATTGGTTCATATTTTCGTGGTTCGACGagatga
agaatttcttctgtcgcctttttgaagaaatagaGCTCAGCCAAATGGAT
TTCATGGTTTGTTAGCTGAATTGATTTGGATGAAGACTTCTTTCTTGTGA
TGTTGCAGAATTTGATAACGTAAGCAAGAATTCGGATGACTGTCGAAAAG
CTTCTGTGGTTTGGGTCGATGAGNN
Run BLAST on NCBI

protein sequence of TCONS_00072763-protein

>TCONS_00072763-protein ID=TCONS_00072763-protein|Name=TCONS_00072763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
LIDPNHRSFSTVIRILAYVIKFCNITRKKSSSKSIQLTNHEIHLAELYFF
KKATEEILHLVEPRKYEPISTLKDGILTYNGRILSDTKTTIVGRFTSAML
DLSSSSFCVPIIDGNSPIAFSIVYDIHWNSSACHSGIETTIREILKKVYI
INGRALVKLIRRTCTKCRIILKKQIEAIMGPIPPSSLTVAPAFYNSQIDL
SGPYQSF
Run BLAST on NCBI

transcript from alignment at scaffold_83:35378..36002

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072763 ID=TCONS_00072763|Name=TCONS_00072763|organism=Clytia hemisphaerica|type=transcript|length=625bp|location=Sequence derived from alignment at scaffold_83:35378..36002 (Clytia hemisphaerica)
NNCTCATCGACCCAAACCACAGAAGCTTTTCGACAGTCATCCGAATTCTT GCTTACGTTATCAAATTCTGCAACATCACAAGAAAGAAGTCTTCATCCAA ATCAATTCAGCTAACAAACCATGAAATCCATTTGGCTGAGCtctatttct tcaaaaaggcgacagaagaaattcttcatctCGTCGAACCACGAAAATAT GAACCAATTTCAACACTTAAAGATGGGATACTAACATACAATGGACGCAT CCTATCAGATACAAAGACAACAATCGTCGGACGATTCACATCTGCCATGT TGGACCTATCCAGCTCATCCTTTTGTGTACCTATAATCGATGGAAACTCT CCCATAGCCTTCAGCATCGTGTATGACATCCACTGGAACAGCTCTGCATG TCATTCTGGCATTGAAACTACTATCAGAGAAATTCTAAAGAAAGTGTACA TCATTAATGGCCGCGCGCTTGTCAAGCTAATCAGAAGAACATGCACAAAA TGTCGTATCATCCTCAAGAAGCAGATTGAAGCCATCATGGGACCAATTCC ACCTTCAAGTCTAACAGTTGCTCCGGCATTTTATAACTCACAGATCGACC TCAGTGGACCATATCAATCATTTTC

Coding sequence (CDS) from alignment at scaffold_83:35378..36002

>TCONS_00072763 ID=TCONS_00072763|Name=TCONS_00072763|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_83:35378..36002 (Clytia hemisphaerica)
CTCATCGACCCAAACCACAGAAGCTTTTCGACAGTCATCCGAATTCTTGC
TTACGTTATCAAATTCTGCAACATCACAAGAAAGAAGTCTTCATCCAAAT
CAATTCAGCTAACAAACCATGAAATCCATTTGGCTGAGCtctatttcttc
aaaaaggcgacagaagaaattcttcatctCGTCGAACCACGAAAATATGA
ACCAATTTCAACACTTAAAGATGGGATACTAACATACAATGGACGCATCC
TATCAGATACAAAGACAACAATCGTCGGACGATTCACATCTGCCATGTTG
GACCTATCCAGCTCATCCTTTTGTGTACCTATAATCGATGGAAACTCTCC
CATAGCCTTCAGCATCGTGTATGACATCCACTGGAACAGCTCTGCATGTC
ATTCTGGCATTGAAACTACTATCAGAGAAATTCTAAAGAAAGTGTACATC
ATTAATGGCCGCGCGCTTGTCAAGCTAATCAGAAGAACATGCACAAAATG
TCGTATCATCCTCAAGAAGCAGATTGAAGCCATCATGGGACCAATTCCAC
CTTCAAGTCTAACAGTTGCTCCGGCATTTTATAACTCACAGATCGACCTC
AGTGGACCATATCAATCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045173XLOC_045173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072763-proteinTCONS_00072763-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072763-exon-scaffold_83-1491911889:35378..36002TCONS_00072763-exon-scaffold_83-1491911889:35378..36002Clytia hemisphaericaexon
TCONS_00072763-exon-scaffold_83-1510915933:35378..36002TCONS_00072763-exon-scaffold_83-1510915933:35378..36002Clytia hemisphaericaexon
TCONS_00072763-exon-scaffold_83-1575043694:35378..36002TCONS_00072763-exon-scaffold_83-1575043694:35378..36002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_83supercontigscaffold_83:35378..36002 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.45805 3.58828 3.54551 1.72983 3.53653 2.54528 3.32656 3.02744 1.23546 2.75323 1.90087 2.86953 1.64511 0.800544 0.860551 1.20328 1.28043 1.72761 0.759356 1.4546 1.13475 0.770261 1.36015 1.76136 3.42303 4.32821 0.65541 0.258184 0.492476 0.529547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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