TCONS_00072787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072787
Unique NameTCONS_00072787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072787 ID=TCONS_00072787|Name=TCONS_00072787|organism=Clytia hemisphaerica|type=transcript|length=225bp
AAAGACATCAAAGAATGGAGGAATCAGAAAATCACTTCCAACATACCAAT
AGTGAAGATGAGACGACGTGTGTTCTTGACACTAAACCCATTCATGATCA
TCATATCCGCAATAATACCACCGGATGGACCAACGATTGCTTTGATCAAG
TATGGCAAAGAAACCAAGAAACCAGTCTAGTGGtTTCAACAGTTTCGTCA
AGAGCTATCTTAACAACGCAAGATG
Run BLAST on NCBI

transcript from alignment at scaffold_84:109492..114129-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072787 ID=TCONS_00072787|Name=TCONS_00072787|organism=Clytia hemisphaerica|type=transcript|length=4638bp|location=Sequence derived from alignment at scaffold_84:109492..114129- (Clytia hemisphaerica)
AAAGACATCAAAGAATGGAGGAATCAGAAAATCACTTCCAACATACCAAT
AGTGAAGATGAGACGACGTGTGTTCTTGACACTAAACCCATTCATGATCA
TCATATCCGCAATAATACCACCGGATGGACCAACGATTGCTTTGATCAAG
TATGGCAAAGAAACCAAGAAACCAGTCTAGTGGGTAAGATGAATTTTCAG
TTATATTTTTCAGGATTTTATTTTCAGCGCTGTAGAATTTGGCAAATATC
AAATATTATTTCTAGGTTGATTGGATTTAAATTGCCGGTTTCGCCTGACG
AGTTTAATCTCACAGGGTCTGGGAAACTCAATTTGTTTGAAATAGTGAAA
TGATCATTTTCGAATTACAGAGAAATTCGAATTGCGGTCACTGAGAATTA
TTTCGACTTGTAAAGATTCACACCCCCGCGTCCCCGTATATCCCAGGCTT
TATTTACGTTACTGATTAACGCTAGGGTATTATCTAGCGCTATCAGTAAG
CATCAAAAAGCTGATAATACGCAGGAGGGAACGAGGTTGCGATTCACATA
TATGAAGCTTGAATTAGCGAGAGTCCCTTGAGTCTTATTTTCTTACCGTT
GCGATATCGAAGTTCAAAACCTTTTGGAAGAATTTCGGGATACAAATAAG
GATTGTATATAAACCCCAATCAGCTGTGAAGTTTGCAACAATAGTGGCCC
AAACAGGAATTGAAGTTATAATCTTTAACCAAGGTACTGGTGGTGCCTAA
AATGATAATAATCGTGTGTAACTAGTAAGCCCATGAAAGGCATTAAAAAT
TTCGATATCCAATGGTTATGCTTTGCTTCATCTAAATCGATTAAATACTG
TAATTCAAGCTGTTTTGCATACTTCCTCTCGAGAATTTGAATATGCAAAG
TATAGGAATATGTAAAGTAGTATACAAAAGTTGAAAAATATTGGGAACAT
GGCTAGAAAACACAGATACTCGATTTTATTAAGACCAACTCCGACCGTAA
GAGCTCAGGAGAATTCACGCAGCGCTAGCCATAATAAAGTTATTTTCAGC
TTATGAGATGGGAGATGACCGCCTGTCTTTAAGCTAATTCTTAACCAATC
TTAGCTCCCTCTCACACTGACTCATAACTCGTTGTTTAAAACATGCTATG
CAATATTTAGATTTGTGTCTTGACTAACCTTTTCGCCTTTTCTATTAGAC
AAGCTAGCCATGATATAGTTCTTTTCAGCCTGTGAGATGGTAGGATGTGT
CTCAGGGGCTGGATGAATGACCAGCCACCACACAAATGACCACAACAGAC
CAACAGCACCTAGAAAGAACGTGAAAGTTTATAAGCATTTCGAAATGAAT
TGTAGAAATAAAAAGCGTTAGTACCATAACTACGGCTCTAACGTGAATGT
TAAATCAGGGATTTACTTCTTTATTATCATTACTTTTTATTCAAAGTCCT
CAAGTTAAGTGTGAAAATCTTAAAGATTACTTTTGTGAAACGCAAAAGCT
GAGTGTTTTTATAATTTGTAAAGTCTCAAAAATTCGGTATTGAACCTCGA
TGCAGTGCTCATCCATCAAAAAAACGTTGCATGGACGTGGTTTTGCATTT
GGTATTGACGAACTTACCAAAAACGTAGAATACGGAAGCCCAGCCACCAT
CAAATCCATATTTGGTCAACAGACCTGTCATAGGCATAGTCAAAATGGTT
CCTACGGGACATCCTGCAGCTGTGATTGAAAACAAACGAGATCTTTCCAA
AGGCGGAGCCCATTGACCCCAAATAGCGTGGTTACTTGGGAAAAGGACAC
CCTAAAATCAATAGAAGTTTACAAAACATGAATTTTACCAAAAAACATAC
GAAAGCTTAATTTATTTTCAACAAACAAAAGGCAGGTATTAAATTTAAAA
TTGTAATACTAATTAATCGTTGTAAGAAAAACATTTGAGGCAAACATGGT
AGATGACAAAAAATGTAACTTGGTGGAAACTTGAAATTCAGCCAAATTTC
TTCTTGCAAAGATTAGTACAAATAAGATTCGATCCTTGTAAATAGATCTT
ATCGGAGTTTTTGATTTTTCTAAAAAATGCGATGCATTGTGGGATTGTTT
CGGGAGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGGGAATTCTAT
TGTAATACTCCCAAAACAATCCCAAAATGCATCGCTTTTTTAGAAAAATC
AAAAACTCCGATAAGATCAATTTCATGTTTTGCTGAATTTAAAAAGATAC
TTACCAAAGCAATGCCTTCAAGTACTCTCAAAACAATCAAGGCGTAGACG
CTGAATCGTGCGGCCATCGGCGTCAAGAGTGTTAGCACAGACGCAAAGAA
CAAAGCGGCGCCGAAAATTCTTGTTCCACCGATTCTAGTGGCTAACCAAC
CANGGCCGTCGGCGTCAAGAGTGTTAGCACAGACGCAAAGAACAAAGCGG
CGCCGAAAATTCTTGTTCCACCGATTCTAGTGGCTAACCAACCACCAGGA
ATTTGCAGAACGATGTAACCATAGTAAAATGATCCAAGTACCATTCCTGA
AATTGAATCATTGAATGCTTCAATACCCGTGTTAAGCCTTCATATAATCA
ATCACATAAGATGGACGTCAAAACGACACTGATGCTAGTTGAGTAGAATC
TTATCTATAGTGCCTTAACCCTTCAAACCCGAGTGACGTGTATACACGTT
CTAAACTTGACGATATTCCTAAAAGGGCATAAACAAGAGGAAAGGACAGG
AAATAAAAGTGATATAAAAATATTGGTTTTCCATTATTTTATTAGTTAGA
TTTTTTTAAATAGTCGATCCAAGCCTGAAGCCCGCCTTACTGCTCGTAAA
TTATCAGCATTGACTGCTGACGGTATAAACTGGAGTTGACTCATCACATA
GAATGATTGAAACTTGAAGTAAAAAGAGGTGAAGCAGATAGCCTGTACCA
CACTGTCAATCTTTACAAACTTTATGTTTGCTTTGGTAAGAATTTGTCAA
GCTTTCAAGTACTAGCTTCACAATGTGTCAATGAAAAGATTACATATTGT
TTTTGTCAGCAATATATGTTTTTCTTTTGAAGTGGCAAAAGGTTACATCA
CATCAATTAGAAAGCTATTTCTACCCACCGTTGCTATGGGCATTAATCAC
TTAACTTGAGTCATTGTAGCAATGCTTTATTACCATGATTAGAGATCCTC
ACATAGCCCTAGTTACATTACCATACATTTTAGGTTACTTATGTTTTGTT
GTTATATTATTGTTATTATCTTTGAACGGAAATTATATGAGGAATTGCTG
ATTAAGAAAGAAATTCACCGACATATCTTGCTTGTCAAATACCCTTTCAT
GATCTTTCCAACGAGTTCTACCACAGTTATTCCCAACCCAAACTTCAATG
TTTATTTAAGGGTTGGCCAGGTTTCTCTCTAAATGGATTACGTTCCCAAT
ATAGGATACATCGATTTAGCACCGACATGGCAGATTGTAGTTTCTAGGTG
GTGGATCCTCTTTTTGTGGAGAACTTTAGTTACATTGCTTGGTTACTTAA
GCTCTTGTTATTGAAACTTTTTCAGTAGCATTAATACAATATTGCAATAC
TACCTATTTTGTAATCAGTTGTTCCTTTTAAGGAACAAGCNCAGTAGCAT
TAATACAATATTGCAGTAATACCTATTTTGTAATCAGTTGTTCCTTTTAA
GGAACAAGCTTCTTGTATCAGTAGCTACCGTACCATTTTGGGGCATTGGA
GCTTTTCCAGAGAAGAACTTTCGTTATGGGGTTTAAAGAATATCAATTTA
TGAGCAATTTTAAACTCTGTGTAATAAGAAAGCATATCATTTTGAAAAAA
TAAATGAAAAAATAATTTTCAAACTTACAAACTTTTCCTTGTTTCATCCC
AAAGTAAGTTTAGACTTGAGATACTTATTATATTGATCTTATCATGTTCA
AATTTCTAGGGTATTTTAACTTAGAAACCCTATTTAATATACAAATAAAA
TTCAGCAATTCCGGCTCAATATTGTTCTTATGGAAAATGAGTGCATTTGA
TTTAATGTTTCTAATCTGAACACCTGTAGTAACTATTAATCAATCACTTA
TCTTCACCTGCCAGTATAAGACAATGTAAATAGTGCCATAGTTAATACAG
GTAATTAGCGATCAATATTAGACGTTACATCCGGCAAGTGAACAATATAG
AAAAACCGAAACAAAGTTTTGAAGTCAGTTCATAAATTAATCGAAACTTC
TATATGTCACGAGTAGAAAACCTTAAGCGTGGAAGAATTTTAAAGGATTT
TCGACAAAAAATTGGATTTATTTAATTGAAAAGACTTTGACTTGAGGCAT
TACAATTGCCTTCAAAATTTGATAAAAAGGAAAAAATTTAATGATGCTAT
TTGGCAACATGTTATTAGGCCTAATTGTGGCAATTTATGCAGGTAATTAT
CCTTTTCTGAGAGAGAAAAGTTTAATCAAGCCATTGATCAACACTATATC
ATTTATTTGGGATCAGAAAAACGGAACATTTTGTGAAAAAAATGGCTAAA
CTAGTCTTATTGTTGGAGATTTTGAGATTTTCTTTTCTTTTTACAGTTTC
AACAGTTTCGTCAAGAGCTATCTTAACAACGCAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045181XLOC_045181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072787-exon-scaffold_84-1575043694:113947..114129TCONS_00072787-exon-scaffold_84-1575043694:113947..114129Clytia hemisphaericaexon
TCONS_00072787-exon-scaffold_84-1575043694:109492..109533TCONS_00072787-exon-scaffold_84-1575043694:109492..109533Clytia hemisphaericaexon
TCONS_00072787-exon-scaffold_84-1510915933:113947..114129TCONS_00072787-exon-scaffold_84-1510915933:113947..114129Clytia hemisphaericaexon
TCONS_00072787-exon-scaffold_84-1510915933:109492..109533TCONS_00072787-exon-scaffold_84-1510915933:109492..109533Clytia hemisphaericaexon
TCONS_00072787-exon-scaffold_84-1491911889:113947..114129TCONS_00072787-exon-scaffold_84-1491911889:113947..114129Clytia hemisphaericaexon
TCONS_00072787-exon-scaffold_84-1491911889:109492..109533TCONS_00072787-exon-scaffold_84-1491911889:109492..109533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_84supercontigscaffold_84:109492..114129 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.57492	0	2.58998	0	3.08476	3.65643	7.35222	6.88306	1.9276	4.77528	8.11125	2.28515	2.28197	2.36985	8.44281	2.09087	0	5.28018	0	0	0	0	1.31138	0	6.13986	4.38374	0	0	1.26945	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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