TCONS_00072817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072817
Unique NameTCONS_00072817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072817 ID=TCONS_00072817|Name=TCONS_00072817|organism=Clytia hemisphaerica|type=transcript|length=349bp
ACCAAGACGATCTTCTACTTTGATGCTGTAAATTTACAAAAATCAGATTT
TGAACAAGAAGTCCAAATTCATTTCATCTTTGGCTAATTGCAACATCATT
GTGTCAGTCAAAATATCGAAGCGCTCTTTATTCGTCAACATCTTTATTGA
TCATTTCTTGTCGTGAAGATTGAATAATGGTTTTGATAGAATTTCAGCCA
ACGCATTTTGGTGATTCAAAAACCGCTCGTAACCTTGGTCTTTATGTTTT
AAAAGTTGCCGAATGGCAGCACACAAATATTTTGGTTTTCAAAATTATTC
CTCGTTTTCGTTGCTTTTTTACTTGGTGAAAGTTTATTATCAAATCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_85:7980..8527+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072817 ID=TCONS_00072817|Name=TCONS_00072817|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_85:7980..8527+ (Clytia hemisphaerica)
ACCAAGACGATCTTCTACTTTGATGCTGTAAATTTACAAAAATCAGGTAA
AATCTTCTTTAATATGTATCAATCAATTAAGTACAGGGTATCCGAAACAA
AAGGAGACAGAAGATCAAAACATGTCATTAAATATGCAAGAATGTGGATT
TTCTGTCTTTATGCTATCCAATAGATCTAGATCTAGATCTAGATTTATAA
ACTCGCACGTTCTGAACAATATTTTGTTTCTCCTTTTGTTGCTAGATTTT
GAACAAGAAGTCCAAATTCATTTCATCTTTGGCTAATTGCAACATCATTG
TGTCAGTCAAAATATCGAAGCGCTCTTTATTCGTCAACATCTTTATTGAT
CATTTCTTGTCGTGAAGATTGAATAATGGTTTTGATAGAATTTCAGCCAA
CGCATTTTGGTGATTCAAAAACCGCTCGTAACCTTGGTCTTTATGTTTTA
AAAGTTGCCGAATGGCAGCACACAAATATTTTGGTTTTCAAAATTATTCC
TCGTTTTCGTTGCTTTTTTACTTGGTGAAAGTTTATTATCAAATCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045197XLOC_045197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072817-exon-scaffold_85-1491911889:7980..8025TCONS_00072817-exon-scaffold_85-1491911889:7980..8025Clytia hemisphaericaexon
TCONS_00072817-exon-scaffold_85-1510915933:7980..8025TCONS_00072817-exon-scaffold_85-1510915933:7980..8025Clytia hemisphaericaexon
TCONS_00072817-exon-scaffold_85-1575043694:7980..8025TCONS_00072817-exon-scaffold_85-1575043694:7980..8025Clytia hemisphaericaexon
TCONS_00072817-exon-scaffold_85-1491911889:8225..8527TCONS_00072817-exon-scaffold_85-1491911889:8225..8527Clytia hemisphaericaexon
TCONS_00072817-exon-scaffold_85-1510915933:8225..8527TCONS_00072817-exon-scaffold_85-1510915933:8225..8527Clytia hemisphaericaexon
TCONS_00072817-exon-scaffold_85-1575043694:8225..8527TCONS_00072817-exon-scaffold_85-1575043694:8225..8527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_85supercontigscaffold_85:7980..8527 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.613657	1.73822	2.5308	1.29523	0.711373	2.6898	0	0.971802	1.53273	0.000832554	0.571793	0.773095	4.32924	1.15646	1.25891	2.52925	0	0	2.7216	6.73127	1.27778	0.874977
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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