TCONS_00072826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072826
Unique NameTCONS_00072826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072826 ID=TCONS_00072826|Name=TCONS_00072826|organism=Clytia hemisphaerica|type=transcript|length=731bp
GTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGtTTTCTCCTGTTGA
AGATTCACAACAATGTTCGCAGCAAATTGAAAATTCACAGCAAACTGAAG
AGTCGCCGTTCAAACTACCTTGGGATACACCTGTTAAGATCAAAAACAAG
GAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTGGTCCCTT
AGAAACAGATACAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAGATT
TCACTGAGGAGTTTTCAGTTGCGGactTTGATGCAGTTGAATTCATGAAT
ATTGCAAAAACTTATTGCGGCGTTCAAGAATTTTCTACAAGAAATGATTT
GCTTAAGTATTCTCTCAAGGCTGGTATGTTGGGTGGTATTGGTGGCCAGG
CGACAATGGACCAAGGAATAGAAACGTTTGGGAGATGGCTGTTTGTCAAC
AAAAAGGTCATGGTATTGCATAAACCAGTCGAAAACGCACTGGATATGGT
CAAAATTGTGCCAAAATCGAAATaattgaaaatagaaatgtagATTTGAT
CATTAGATACATCGCTGTTTCTATTTTCCATCTTTCAATTAGTTTTCGTT
TTTAGTataacttttaccaaaaaaatttatAGTTTATGAACCGTGCAAGC
TGTCTGGACAAATCGAGTAAGTTATACGTACTGATGTAAAACAAACGTTG
TGTCGACCAGGTTTCACACACTTTAAAACTC
Run BLAST on NCBI

transcript from alignment at scaffold_86:81138..84102+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072826 ID=TCONS_00072826|Name=TCONS_00072826|organism=Clytia hemisphaerica|type=transcript|length=2965bp|location=Sequence derived from alignment at scaffold_86:81138..84102+ (Clytia hemisphaerica)
GTCAGAGAAAACCCATTCACACGGTCACTAGGGCTGGTAAGTTTCATTTC
CCtcttcttttatatttttggttTCAATGAAAAGTTATTGAATTTTGCTG
CTACAGGATAGCACAGTAGCAAGCATTGATGCTCTTTGCTTTTAATCAGT
NATTCACACGGTCGCTAGGGCTGGTAAGTTTCATTTCCCtcttcttttat
atttttggttTCAATGAAAAGTTATTGAATTTTGCTGCTACAGGATAGCA
CAGTAGCAAGCATTGATGCTCTTTGCTTTTAATCAGTCTTTGATTTGCAT
TACAAAAAAACTAATTACAATTATTATCCCTAATTCAaacgtttgttttt
gtttatagtTTTCTCCTGTTGAAGATTCACAACAATGTTCGCAGCAAATT
GAAAATTCACAGCAAACTGAAGAGTCGCCGTTCAAACTACCTTGGGATAC
ACCTGTTAAGGTAAGAATGTGTTTGCATTTTGTTTAagccttttaatttt
ttttcattcgaTTATATAACACAAGAAATGcttctttcagaaaaattgtC
TGTGAAATTAGGTGAGAATCAATAGTTGACCTCCCGTTGCCATTGTGAAT
CAATTTAGAGGAATTTTGACATGAAGTGAAAACATCCAGGAACATCCCTG
AAGATAATTTTAGTGCTGTGGTtttaaaagggttttttttctgttgtttt
tggTCATTTCAGTGTCAATTCTTAAATCATCATTTGCTTTCATCTACTGT
ACCATTCAAAGAAATTCCTTTTGTGTAAAATAACACTTGTGCTTATTTCA
AGCTTTTTCTTCATATGTTATAACATGCTCTACTTTAATACTCAGATCAA
AAACAAGGAAGATGCTAAAGAGAAAATAAATGAATCAGGCATACATATTG
GTCCCTTAGAAACAGATACAGGTATATACAGGTGAAATTTTGACTACATC
AGCAAGCATCCATGAtataatatttgagacaaaattAGTCATGCTGAAAA
TTTATTTGcttcattaaaaattttaaaccgaTTGTGCAATAATACAACAT
ACTGTAttgtggtgttttttttttgagactctttgactttttggagcatg
ttttttgtaaaatgaactgatttaaaataaaatttctttcctcTTACTTT
CAGATCGTAGACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAG
TTTTCAGTTGCGGGTAAGAAGTTGGAAATTGTCTTATAACATTCAGATTT
TTTTCGTACTTAACTTTCCTATATCAGAAGGTATAAACACTTGCACTTTG
GCCATTTTAGACCAACAAGCAAAGTGTATTTTTAGAtagaagaaaaatat
taatCTGAACGTACATGTTTGGAAGAAGTAGAGTATGAACCTCCAATTCt
agtttacatttttcaaacggTAGAACAATTATTTGTACATTTAAAGATAT
CGGAAATGAAGTTGAATTTACTGTGCCAAAActtgctttttgaaaagcta
catgtttttttttataagcaagtgtatgccccttggttaggctcgtgtat
gcttaagttctcaaagcatccaggcatagtttatggttattatatgctta
agaattaagcttatgattcaccccgagccaagttttttagtgaaatttca
gatattttgtaaaaaatttgatcagattttgggagcagtggaacgtagct
agccgtggaatgtcttattttttacttgacctctaccaaaccagaaaaaa
atttaataaaaacagataaaaatgaccacttgaaaaatattttaggctga
catatatgctcatgttatgcttaggaattctgcaaatctgagccttNCAT
TTTATTGTCAATTCTTAAAAAGAATCATCATTTGCTTTCATCTACTGTAC
CATTCAAAGAAATTCCTTTTGTGTAAAATAACACTTGTGCTTATTTCAAG
CTTTTTTCTTCATATGTTATAACATGTTCTACTTTAATACTCAGATAAAA
AACAAGGAAGATGCTAAAGAGAAGATAAATGAATCAGGCATACATATTGG
TCCCTTAGAAACAGATACAGGTATAAACTGAAATTTTGACTACATCAGCA
AGCATATATGATATAATATTTTAGACAAAATTAGTCATGCTGAAAATTTA
TTTGCTTCATTAAAGATTTTAAACCGATTGTGCAATAATACAACATACTG
CAttgtggtgtttttttttttagactctttgactttttggagcatgttct
tgtaaaatgaactgatttaaaataaaatttctttcctcTTACTTTCAGAT
CGTAGACTTGTAGAAATTGAAGACTCAGAAGATTTCACTGAGGAGTTTTC
AGTTGCGGGTAAGAAGTTGGAAATTGTCTTATAACATTCAGATTTTTTTC
GTACTTAANTTTCAAACATCACCTTATAATATGGATATCAGTGTGTAGAT
TAAAAAACTTACCACAAGAAATTAGTAGATTTTTAatgtgtttctttttt
tctttcagactTTGATGCAGTTGAATTCATGAATATTGCAAAAACTTATT
GCGGCGTTCAAGAATTTTCTACAAGAAATGATTTGCTTAAGTATTCTCTC
AAGGCTGGTATGTTGGGTGGTATTGGTGGCCAGGCGACAATGGACCAAGG
AATAGAAACGTTTGGGAGATGGCTGTTTGTCAACAAAAAGGTCATGGTAT
TGCATAAACCAGTCGAAAACGCACTGGATATGGTCAAAATTGTGCCAAAA
TCGAAATaattgaaaatagaaatgtagATTTGATCATTAGATACATCGCT
GTTTCTATTTTCCATCTTTCAATTAGTTTTCGTTTTTAGTataactttta
ccaaaaaaatttatAGTTTATGAACCGTGCAAGCTGTCTGGACAAATCGA
GTAAGTTATACGTACTGATGTAAAACAAACGTTGTGTCGACCAGGTTTCA
CACACTTTAAAACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045205XLOC_045205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072826-exon-scaffold_86-1491911889:81138..81173TCONS_00072826-exon-scaffold_86-1491911889:81138..81173Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1510915933:81138..81173TCONS_00072826-exon-scaffold_86-1510915933:81138..81173Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1575043694:81138..81173TCONS_00072826-exon-scaffold_86-1575043694:81138..81173Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1491911889:81496..81597TCONS_00072826-exon-scaffold_86-1491911889:81496..81597Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1510915933:81496..81597TCONS_00072826-exon-scaffold_86-1510915933:81496..81597Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1575043694:81496..81597TCONS_00072826-exon-scaffold_86-1575043694:81496..81597Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1491911889:81983..82058TCONS_00072826-exon-scaffold_86-1491911889:81983..82058Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1510915933:81983..82058TCONS_00072826-exon-scaffold_86-1510915933:81983..82058Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1575043694:81983..82058TCONS_00072826-exon-scaffold_86-1575043694:81983..82058Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1491911889:83436..83495TCONS_00072826-exon-scaffold_86-1491911889:83436..83495Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1510915933:83436..83495TCONS_00072826-exon-scaffold_86-1510915933:83436..83495Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1575043694:83436..83495TCONS_00072826-exon-scaffold_86-1575043694:83436..83495Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1491911889:83646..84102TCONS_00072826-exon-scaffold_86-1491911889:83646..84102Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1510915933:83646..84102TCONS_00072826-exon-scaffold_86-1510915933:83646..84102Clytia hemisphaericaexon
TCONS_00072826-exon-scaffold_86-1575043694:83646..84102TCONS_00072826-exon-scaffold_86-1575043694:83646..84102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:81138..84102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.392336	0.0356247	0	0	0	0.176131	0	0.260287	0.449991	0.47063	0	0.4564	0	0.246668	0	0.623452	0.169859	0.303574	2.01168e-05	0.506932	1.29169	0.773019	0.495235	0.446042	0.145942	0	0.146827	0.550157	0.82652	0.483997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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