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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=transcript|length=2330bp
gatgttcttttaaaaaaaagttgtttttacatttctctatcatgtgaaca
gttcagttgttcacgtgttaggaaaaaaacatctctgtatataagattaa
atatttcacattgttgtagataagagatagccgaatggtctaaggcgtct
aTGGCTAATATTAGTGACTCCAGGTTCAAATCtcttgttcagttcatatt
tttattcgctgggccttcatgccctctgggcttcttgttttcttttaaga
aaaagtaaaaaaaaatgtccATCACAAGTGAAAATCCCACAACAACTTTA
ACTGGATTTAACGAAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATC
GAATGTTTTCATTCATGTGATTGCTGCATTCATTGCACTTCGAGCACTTC
ACAAACACAAATACGGACGGTACCTACCTATCGCAATCATCGTGTTTGGA
TTTCTGTATCCTATCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTG
GATATACACTGCAGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTT
ATGGTGTGGGGCAGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTG
TATGGAACACTGTAATGAATAGCTTTGAGGTCATACAGCTTATGTAGTGA
TAAAAGCTATAAAATAGCTTCATCTTTGCCTCAATTTGAACATGACTGTG
GAAACTCGTGGAAatcaagaaatcaagaaattgGTGATTCGCGTAAATTA
ATAATCATTTGTATGTGGATCTTCTAATATGGATTTTCTGTTTTACGAAA
TCCTTTTAGATTTGTTGATCCTTTTCAAGCCTGTATAAACATTGTAACGT
GTTGCTTTGAGTTAATACAGCTAACAAAGTAATGAAGCTATCACAGAGCA
AATTTCGCCTATCTTGGTCATTTGTTTAACTTTGAAGATGGCCATGGCCA
GTTTCAAGGCTGTATAAACATTTTAACGTGTCACTTTGAGTGTATACAAC
TGACACAGTAATGAATAGCTTCATAGCGACAGAGCTGATGTCGTCTACCT
TGGTTTTTTGGTTTAATTTAAATATGGCTAAGGAAACACATAGAAATCAA
GAAAGTCGCATAGTAATTCGTGTGAAAGAATGATTTTACTAACTAAAGGC
TGAGGATTTACCAATCTCACACGTGGATGTCCTGTTGCACGAAATCATGT
TGAAGTTCATCTCTATCGATCCTTTTCAAGGCTGTACAGTATAAACCATT
GTAGTGTATAGCTTGATGTATAGCTTGATTCAATACACCACAGCTGATCT
TGgttatttcttttaatttaaacATGGCTAAAGAAGCACAAATCATGACA
TTCGCATCATAACTCGTGTGAAGGAATAAGGACTCTTTCAAtatgaaaat
gactgaaaaggTCAAACCCATGCAGTTCTGGTTATTGACAGTCATTTTAT
CGATCATGACTATCAAAGATTTATCCCAAACATAGTGTTTCCCGTATCAT
AATCGGTCCTCAGCAATTTCATTGTGTTTGTTGGCTGATTTAAtacagtt
gaactcatgtaattcgaattctaaAGAGACCGAGATTTTTGTTCGAAACA
TGAGTTTCGAACTAAAtgagttttcatatttttgacctgatttgatgaaa
aaagactttcccaggtttacttttgaacaattttgtattttcgagcTAGA
ATGATGAAATGCTAGTATAAATAATCTTgacacaaaaatttaaaagtcaa
ttcATAATtcgattgtttcattttttgctCTTGTTCCTTGGAAATCTCCT
CAGATCTTCTGAATCAGTGGGGTGATGTTCGATGACTCGAAAAGAGTCCT
CTTTTTGAGAGTGTCAATAGCCTTGTCAATCAATAAAGtcgaaaattcga
attacattAAACTTTCTTGATGGGACCTGAAATTCTGTTCGATTTGAATG
ATTTTTCGATTTACATGGGTTCGAATTAAAGGagtttttttaaggttttc
aaggtAAATTCTGAGGGGACCCACGGAATCTGTTCGAATTAGGTGAGTTT
TCGAATTATAGTTCGAACTACATGAGTTAAAGTGAATTGTGAGGCTTGGA
TTCGTTATGCGGTTATACGGTTTTGATGGGTTCACATATTTATTATACAT
ATCTTGTAAAATTTTGCGGGAGAAATGACTTtgctttatttatttattta
tttgttatttatttATACTGTTTACTTTATATGTTTCACTTTGATAGAGA
TCAgtaaactgagcaaaaaaatataCTGCAACTTTTTTCCAACTTTTGTG
GATCAGAAGTTATGGGTGTTTTTGtagtca Run BLAST on NCBI protein sequence of TCONS_00072831-protein >TCONS_00072831-protein ID=TCONS_00072831-protein|Name=TCONS_00072831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSITSENPTTTLTGFNEIWYKIFLYCLGSNVFIHVIAAFIALRALHKHKY
GRYLPIAIIVFGFLYPISGGFITSCCIAWIYTAANYAMEVQMCAIYGVGQ
TFFLVVVSFIRLYGTL Run BLAST on NCBI transcript from alignment at scaffold_86:167356..170881+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=transcript|length=3526bp|location=Sequence derived from alignment at scaffold_86:167356..170881+ (Clytia hemisphaerica)
gatgttcttttaaaaaaaagttgtttttacatttctctatcatgtgaaca
gttcagttgttcacgtgttaggaaaaaaacatctctgtatataagattaa
atatttcacattgttgtagataagagatagccgaatggtctaaggcgtct
aTGGCTAATATTAGTGACTCCAGGTTCAAATCtcttgttcagttcatatt
tttattcgctgggccttcatgccctctgggcttcttgttttcttttaaga
aaaagtaaaaaaaaatgtccATCACAAGTGAAAATCCCACAACAACTTTA
ACTGGATTTAACGGTAtaaaatgttttaatcttttttaaCGCCTCACAAT
GGAGGGTCAGTGTGACGCACTTTGCAAACAAAAAGATTCGATCATTTTGA
GTGTAATTTTAAACACTATAAGAACAAACCGTACGGTTTATTTCATTGCC
ATTGGAAGAATCTTTGTACTAAAAATACACCgagaaaataaagaactaaT
TTACAATTTCTACACGGTGTTTCATGCCGGCTCAATCCTAAGACGATgaa
gattttatattttattttgaataaaatctaCATTGATTGAAACTTGCATT
GCCTGAAGGTGGCGCCAGCATGAAACATTGTGGTTCTTTTCATTTGACTG
TACTAACAATGATAGGTCTGTTCACACGTACAACACATTCTCCTGTCATT
TTTAACTCTCAATCCGATAAAtgaatgacaaaaattttttccctatctta
tttttgttttaaactaTTTTAGAAATTTGGTACAAGATCTTTTTGTATTG
TTTGGGATCGAATGTTTTCATTCATGTGATTGCTGCATTCATTGCACTTC
GAGCACTTCACAAACACAAATACGGACGGTACCTACCTATCGCAATCATC
GTGTTTGGATTTCTGTATCCTATCAGTGGAGGTTTCATTACAAGTATGCT
AATATTTCCATGTGAATGAGAAACCATCGCAATTCCCAGTTTTTGGGTCT
TTAAATCGTCTTTTTTATGGTGaagttttaagaattttcttATACTTTAT
CCGAGTTTAGGCGAACTATAAAAAAAGCCTGTGGGGTTAATTCATTCCTA
TAATTTGATTGTTACTTTTTAACAATATTTCACCTTATTTTTATGATATG
TTCTAAACATATAGCAACAAATGTCAATAAGTCAAATAGCGCTTTGCTGC
ATCAAACAaggaaaaaacaatgataccgCGTGTCCAAGAAAAGAGTCCTC
TTTGAAGTGAAATTTCTTGAGAACTACAGTATGAACTGTTAAAGAAACaa
tctttttgcattggaaagaggagggatgataaacttaaattttgaggggt
catttatcaaatttggttAAAAGCTCATCTAAAGTCAAagctaaatgcta
aaacattacttctcaaaaaagttgataaaaggCGAAAAACGAGGATATCA
AATCATCATATTAGTTCttctattgttttctttgtCTAATTTAACGAACA
TTCGTGGGTATCATTAGAGACATAATGCTTTTTCAAGccctaaaaattca
aaatcttagGAACATTTTGTGTCTTTGTACAATAAATTTAATACCCTCAT
TTTACCCTGAAATGCCATTAGATTTGTGATATTAGGCTGGTTAAAAATTT
TTGTCTAAAAGTCTTAATTTCGTATTTTAGGTTGTTGTATTGCTTGGATA
TACACTGCAGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGG
TGTGGGGCAGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATG
GAACACTGTAATGAATAGCTTTGAGGTCATACAGCTTATGTAGTGATAAA
AGCTATAAAATAGCTTCATCTTTGCCTCAATTTGAACATGACTGTGGAAA
CTCGTGGAAatcaagaaatcaagaaattgGTGATTCGCGTAAATTAATAA
TCATTTGTATGTGGATCTTCTAATATGGATTTTCTGTTTTACGAAATCCT
TTTAGATTTGTTGATCCTTTTCAAGCCTGTATAAACATTGTAACGTGTTG
CTTTGAGTTAATACAGCTAACAAAGTAATGAAGCTATCACAGAGCAAATT
TCGCCTATCTTGGTCATTTGTTTAACTTTGAAGATGGCCATGGCCAGTTT
CAAGGCTGTATAAACATTTTAACGTGTCACTTTGAGTGTATACAACTGAC
ACAGTAATGAATAGCTTCATAGCGACAGAGCTGATGTCGTCTACCTTGGT
TTTTTGGTTTAATTTAAATATGGCTAAGGAAACACATAGAAATCAAGAAA
GTCGCATAGTAATTCGTGTGAAAGAATGATTTTACTAACTAAAGGCTGAG
GATTTACCAATCTCACACGTGGATGTCCTGTTGCACGAAATCATGTTGAA
GTTCATCTCTATCGATCCTTTTCAAGGCTGTACAGTATAAACCATTGTAG
TGTATAGCTTGATGTATAGCTTGATTCAATACACCACAGCTGATCTTGgt
tatttcttttaatttaaacATGGCTAAAGAAGCACAAATCATGACATTCG
CATCATAACTCGTGTGAAGGAATAAGGACTCTTTCAAtatgaaaatgact
gaaaaggTCAAACCCATGCAGTTCTGGTTATTGACAGTCATTTTATCGAT
CATGACTATCAAAGATTTATCCCAAACATAGTGTTTCCCGTATCATAATC
GGTCCTCAGCAATTTCATTGTGTTTGTTGGCTGATTTAAtacagttgaac
tcatgtaattcgaattctaaAGAGACCGAGATTTTTGTTCGAAACATGAG
TTTCGAACTAAAtgagttttcatatttttgacctgatttgatgaaaaaag
actttcccaggtttacttttgaacaattttgtattttcgagcTAGAATGA
TGAAATGCTAGTATAAATAATCTTgacacaaaaatttaaaagtcaattcA
TAATtcgattgtttcattttttgctCTTGTTCCTTGGAAATCTCCTCAGA
TCTTCTGAATCAGTGGGGTGATGTTCGATGACTCGAAAAGAGTCCTCTTT
TTGAGAGTGTCAATAGCCTTGTCAATCAATAAAGtcgaaaattcgaatta
cattAAACTTTCTTGATGGGACCTGAAATTCTGTTCGATTTGAATGATTT
TTCGATTTACATGGGTTCGAATTAAAGGagtttttttaaggttttcaagg
tAAATTCTGAGGGGACCCACGGAATCTGTTCGAATTAGGTGAGTTTTCGA
ATTATAGTTCGAACTACATGAGTTAAAGTGAATTGTGAGGCTTGGATTCG
TTATGCGGTTATACGGTTTTGATGGGTTCACATATTTATTATACATATCT
TGTAAAATTTTGCGGGAGAAATGACTTtgctttatttatttatttatttg
ttatttatttATACTGTTTACTTTATATGTTTCACTTTGATAGAGATCAg
taaactgagcaaaaaaatataCTGCAACTTTTTTCCAACTTTTGTGGATC
AGAAGTTATGGGTGTTTTTGtagtca Coding sequence (CDS) from alignment at scaffold_86:167356..170881+ >TCONS_00072831 ID=TCONS_00072831|Name=TCONS_00072831|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_86:167356..170881+ (Clytia hemisphaerica)
atgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAACGA
AATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCATTC
ATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAATAC
GGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCTAT
CAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGCAG
CCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGCAG
ACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTGTA
AatgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAACG
AAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCATT
CATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAATA
CGGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCTA
TCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGCA
GCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGCA
GACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTGT
AAatgtccATCACAAGTGAAAATCCCACAACAACTTTAACTGGATTTAAC
GAAATTTGGTACAAGATCTTTTTGTATTGTTTGGGATCGAATGTTTTCAT
TCATGTGATTGCTGCATTCATTGCACTTCGAGCACTTCACAAACACAAAT
ACGGACGGTACCTACCTATCGCAATCATCGTGTTTGGATTTCTGTATCCT
ATCAGTGGAGGTTTCATTACAAGTTGTTGTATTGCTTGGATATACACTGC
AGCCAACTATGCAATGGAGGTTCAAATGTGTGCCATTTATGGTGTGGGGC
AGACCTTTTTCTTGGTGGTGGTGTCCTTTATTAGGTTGTATGGAACACTG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072831-exon-scaffold_86-1491911889:167356..167668 | TCONS_00072831-exon-scaffold_86-1491911889:167356..167668 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1510915933:167356..167668 | TCONS_00072831-exon-scaffold_86-1510915933:167356..167668 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1575043694:167356..167668 | TCONS_00072831-exon-scaffold_86-1575043694:167356..167668 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1491911889:168128..168298 | TCONS_00072831-exon-scaffold_86-1491911889:168128..168298 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1510915933:168128..168298 | TCONS_00072831-exon-scaffold_86-1510915933:168128..168298 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1575043694:168128..168298 | TCONS_00072831-exon-scaffold_86-1575043694:168128..168298 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1491911889:169036..170881 | TCONS_00072831-exon-scaffold_86-1491911889:169036..170881 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1510915933:169036..170881 | TCONS_00072831-exon-scaffold_86-1510915933:169036..170881 | Clytia hemisphaerica | exon |
| TCONS_00072831-exon-scaffold_86-1575043694:169036..170881 | TCONS_00072831-exon-scaffold_86-1575043694:169036..170881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:167356..170881 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019334 | Transmembrane_pr_170 |
Blast
BLAST of TCONS_00072831 vs. Swiss-Prot (Human)
Match: T170A (Transmembrane protein 170A OS=Homo sapiens GN=TMEM170A PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.467e-21 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1
Query: 289 TTTLTGFNEIWYKIFLYCLGSNVFIHVIAAFIALRALHKHKYGRYLPIAIIVFGFLYPISGGFITSCCIAWIYTAANYAMEVQMCAIYGVGQTFFLVVVSFIRLYGTL 612
+T+L F E+WY +FL+ L S++F HV A +AL L HKYGR++ ++I++ G + PI+ G +TS IA +Y AA M G GQTF ++VVSF+R+ TL
Sbjct: 37 STSLCSFPEMWYGVFLWALVSSLFFHVPAGLLALFTLRHHKYGRFMSVSILLMGIVGPITAGILTSAAIAGVYRAAGKEMIPFEALTLGTGQTFCVLVVSFLRILATL 144
The following BLAST results are available for this feature:
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