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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=transcript|length=891bp
CAGAAATGACAGCACAAAAAAGCAGCGTAGTTCGAGAAAGTTGACGACGA
AGCAAAAACCACACTAAATTTCGTAATCTAAGGCAATAAAGAGAACAGAT
TGACAGAGACAAAGAAGGATTAAGTACTACACTAAAACATAGATCAAAAT
GCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGATTGATG
TGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAGATCTT
GGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTAAATGC
TGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGACGACC
CACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACGATATC
GAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTCTTTGA
ATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGATGTTT
GCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAGAGATC
CGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAGGAACA
AGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAAATTTGATCAAGTA
ATTTTTAAGTGTTACTCGACTTCACTTTCAAAACATCAGGGACATCAAAA
AGTATCTATTCAAATCTAATACTTTATTTTGTTTATACGTTTCTAATTTC
TTACGTTTATATTTAATTTCATACCATTAAACTGTGTGTTTAAGTTTATA
TAATAAAAGCTTTCAAACTTAAAGTTGTGTTGtgtgtttaaaaatctttc
tcCAAATGTTTTATCTCTAAAGTTTGCAAAATGACCAAGAT Run BLAST on NCBI protein sequence of TCONS_00072856-protein >TCONS_00072856-protein ID=TCONS_00072856-protein|Name=TCONS_00072856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MPTIRLQSSDSEIFEIDVEIAKASMTIKTMLEDLGLDEDDDEPIPLPNVN
AAILRKVIQWATHHKDDPPPPEDDENKEKRTDDIETWDQEFLKVDQGTLF
ELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEE
QVRKENEWCEDK Run BLAST on NCBI transcript from alignment at scaffold_86:316437..319497+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=transcript|length=3061bp|location=Sequence derived from alignment at scaffold_86:316437..319497+ (Clytia hemisphaerica)
CAGAAATGACAGCACAAAAAAGCAGCGTAGTTCGAGAAAGTTGACGACGA
AGCAAAAACCACACTAAATTTCGTAATCTAAGGCAATAAAGAGAACAGAT
TGACAGAGACAAAGAAGGATTAAGTAGTAAGTAAAAACATATTATTGGAG
ATGGAATATCTCAGAGGATAGTAGACAGGGATGGAGTATTCATTCATCAG
TTTTTTTTGCtttgtgtcaatttttatgGGATATAAAGCAATAAACAAAG
AATGTGATGGTGATATCAGTTAAGATTAACCTGATAGCAGCTATGGAGTT
TTTTTTAACgcgacacgctgaagctctaaagatcgctaaaaactaacatc
tgaggaaaatggccctatctctacagaaattttgagtcaactttttgtct
tgtgccgaaaacttcaaaattaaaacTCGGCTGAAATGGCGCTCCATGAA
AAGTGccttttatagataggaattaaaattctatcccacaatgctttgcg
actggaaagatttcaaattggaggcggaaggtgaaaatggatgtttgtta
ttgttctgaaactcaagttttttggtctttatactttataaactttataa
aagtattcagtaatggtttgtattcattttctatagcttcagttttcttc
tactgataatataaagatgtttgtttatgatttttctctctttttaagtG
GTATTTGTGTGTGATGTTATTATACTTTGTTTTCTCTtgtgtgatcagtt
taaagcaaaaaagattcttttttgacCATATTCATCCATTAAAGAACCTT
GTTTGTGAAATACAataatgttttgcatacttcttttccaaaaaagttct
gaatttGCTTCGAGAGAACTTGACATATCTCCTGACCTAAaagttgtcgg
ccatgacaccccTCCTTGTCGACATTGCACCCGGACCTGTTCCActtaaa
taaaattctacgcGGTCCGCGTACAGGCGCGCGaccatattcttcagatt
gtatatttttcgtccacgtctttagagcttcagcgtactgggccagaaaa
tacacaatctgttatcaggttAGTTAAGTTAGAGAAGAGAGTTAGAGAAG
TCAGTTATAACCTAGTCCTTATGCAGCGATGGTATCATCAGTTATTCACA
CttggaaatcaagctttcagcaAAAAACAAGTATCAGTCATCTGCAGGCT
GtattttaaaacttatttttgatATCATTTAGATAGATTGGTGCATTTTG
CAAAACTAATTTTGGCACTCACTTTCTGgcaaaattttttcatatatCTA
GgggtttttgaagatttttagtgAAACATTGGGCAAATTAAATTTTGGTG
ATGGTAGACAcccaaaaatgggaaaattttagGTCATTAATAATAGCTGT
CTGTGGTGACTAGCTAGAGTCTAGTAGCTCTGGATAAAAATATTTCCTAT
GCTGCAAACAAGAAAATGTGAAACCCCAAGAAATTTTATGTACCTATAAA
GCCCCAAATGGGAGGGGGGCTTGTAGgagttcgaaataccgtttttccgt
cAAAAGTTTTGctgaatgggctcttccagaaaaaaaacattcatgggggg
tggaggatatattgtccaggggtattgaaaaaaaccTGAAAAGCTGCCAT
GTCCATGCGGTGAATcagcaatgtccaggggtaaatatttgtgtccaggg
ggtcaatttgatgcttatccaggggtaaaacacgtgtccagggggtgaaa
aatcgaaaagtccaggggtagatcaaagaaaaaataatatatcctccaca
ccccatgaacgaattttttctggaagagcccaatcccGGAatcccaaaaa
ttgaaaaaaatagtaaCGCCGTCACAACAGATTGtccaggttcaaatacc
ggcataatgacaaaatagaaggccaaataccgtcaccgtctgattttaaa
atactgttttcccgtcttttttcctgtcaaatcccgtaataccgtactaa
aaaatggccaatcccgtcacaccgtaaaagtacaaaccccccccaAATTG
AACCGCCCTAAATAACTTGAACCGCCCAATTTGCCAAACACAGGAGAAAG
AATATGTAACTCGAATCAGGAATTAGCTTCATTATGAATACAATTTTATA
AGCTCCCTGaacaaaaaacagaaaattaaaACAGGCCTGGCTCCTAGAAT
CCCCATTCAAGTGCTTAGGTCTGCAGTACTGGGCTGTTTTTCATACTAAA
TTTATTTCTAAGAACGATTATGTGTGACATGCAATTCTCATTTTAGCTAC
ACTAAAACATAGATCAAAATGCCTACCATTCGTTTGCAAAGCAGTGACAG
TGAAATCTTTGAGATTGATGTGGAAATTGCAAAAGCTTCAATGACCATCA
AAACAATGTTAGAAGATCTTGGTTTGGATGAAGATGATGACGAACCCATC
CCATTACCCAACGTAAATGCTGCCATCTTAAGAAAAGTCATTCAATGGGC
AACACACCACAAAGACGACCCACCACCACCAGAAGatgatgaaaacaaag
aaaagcgCACAGACGATATCGAAACCTGGGATCAAGAATTCCTCAAAGTT
GATCAAGGAACTCTCTTTGAATTGATTCTAGCTGCTAATTATTTGGATAT
TAAAGGACTCTTAGATGTTTGCTGTAAAACAGTAGCAAATATGATTAAAG
GTAAAACACCTGAAGAGATCCGCAAAACCTTCAACATTAAAAATGACTTC
ACGCCAGAAGAGGAGGAACAAGTACGCAAAGAGAATGAATGGTGTGAGGA
TAAATAAATTTGATCAAGTAATTTTTAAGTGTTACTCGACTTCACTTTCA
AAACATCAGGGACATCAAAAAGTATCTATTCAAATCTAATACTTTATTTT
GTTTATACGTTTCTAATTTCTTACGTTTATATTTAATTTCATACCATTAA
ACTGTGTGTTTAAGTTTATATAATAAAAGCTTTCAAACTTAAAGTTGTGT
TGtgtgtttaaaaatctttctcCAAATGTTTTATCTCTAAAGTTTGCAAA
ATGACCAAGAT Coding sequence (CDS) from alignment at scaffold_86:316437..319497+ >TCONS_00072856 ID=TCONS_00072856|Name=TCONS_00072856|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_86:316437..319497+ (Clytia hemisphaerica)
ATGCCTACCATTCGTTTGCAAAGCAGTGACAGTGAAATCTTTGAGATTGA
TGTGGAAATTGCAAAAGCTTCAATGACCATCAAAACAATGTTAGAAGATC
TTGGTTTGGATGAAGATGATGACGAACCCATCCCATTACCCAACGTAAAT
GCTGCCATCTTAAGAAAAGTCATTCAATGGGCAACACACCACAAAGACGA
CCCACCACCACCAGAAGatgatgaaaacaaagaaaagcgCACAGACGATA
TCGAAACCTGGGATCAAGAATTCCTCAAAGTTGATCAAGGAACTCTCTTT
GAATTGATTCTAGCTGCTAATTATTTGGATATTAAAGGACTCTTAGATGT
TTGCTGTAAAACAGTAGCAAATATGATTAAAGGTAAAACACCTGAAGAGA
TCCGCAAAACCTTCAACATTAAAAATGACTTCACGCCAGAAGAGGAGGAA
CAAGTACGCAAAGAGAATGAATGGTGTGAGGATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072856-exon-scaffold_86-1491911889:316437..316562 | TCONS_00072856-exon-scaffold_86-1491911889:316437..316562 | Clytia hemisphaerica | exon |
| TCONS_00072856-exon-scaffold_86-1510915933:316437..316562 | TCONS_00072856-exon-scaffold_86-1510915933:316437..316562 | Clytia hemisphaerica | exon |
| TCONS_00072856-exon-scaffold_86-1575043694:316437..316562 | TCONS_00072856-exon-scaffold_86-1575043694:316437..316562 | Clytia hemisphaerica | exon |
| TCONS_00072856-exon-scaffold_86-1491911889:318733..319497 | TCONS_00072856-exon-scaffold_86-1491911889:318733..319497 | Clytia hemisphaerica | exon |
| TCONS_00072856-exon-scaffold_86-1510915933:318733..319497 | TCONS_00072856-exon-scaffold_86-1510915933:318733..319497 | Clytia hemisphaerica | exon |
| TCONS_00072856-exon-scaffold_86-1575043694:318733..319497 | TCONS_00072856-exon-scaffold_86-1575043694:318733..319497 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:316437..319497 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
Blast
BLAST of TCONS_00072856 vs. Swiss-Prot (Human)
Match: SKP1 (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2) HSP 1 Score: 234.572 bits (597), Expect = 1.376e-76 Identity = 141/163 (86.50%), Postives = 153/163 (93.87%), Query Frame = 2
Query: 149 MPTIRLQSSDSEIFEIDVEIAKASMTIKTMXXXXXXXXXXXX-PIPLPNVNAAILRKVIQWATHHXXXXXXXXXXXXXXXRTDDIETWDQEFLKVDQGTLFELILAANYLDIKGLLDVCCKTVANMIKGKTPEEIRKTFNIKNDFTPEEEEQVRKENEWCEDK 634
MP+I+LQSSD EIFE+DVEIAK S+TIKTMLEDLG+D++ D+ P+PLPNVNAAIL+KVIQW THHKDDPPPPEDDENKEKRTDDI WDQEFLKVDQGTLFELILAANYLDIKGLLDV CKTVANMIKGKTPEEIRKTFNIKNDFT EEE QVRKEN+WCE+K
Sbjct: 1 MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 163
The following BLAST results are available for this feature:
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