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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072907 ID=TCONS_00072907|Name=TCONS_00072907|organism=Clytia hemisphaerica|type=transcript|length=3421bpRun BLAST on NCBI protein sequence of TCONS_00072907-protein >TCONS_00072907-protein ID=TCONS_00072907-protein|Name=TCONS_00072907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1028bp NLLLRINRGFESWFCLLSIWVIMKTKFHAGNIYTNIDQNILISPFLINFLRun BLAST on NCBI transcript from alignment at scaffold_86:661776..681374+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072907 ID=TCONS_00072907|Name=TCONS_00072907|organism=Clytia hemisphaerica|type=transcript|length=19599bp|location=Sequence derived from alignment at scaffold_86:661776..681374+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:661776..681374+ >TCONS_00072907 ID=TCONS_00072907|Name=TCONS_00072907|organism=Clytia hemisphaerica|type=CDS|length=49392bp|location=Sequence derived from alignment at scaffold_86:661776..681374+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072907 vs. Swiss-Prot (Human)
Match: NBN (Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.052e-40 Identity = 110/328 (33.54%), Postives = 167/328 (50.91%), Query Frame = 2
Query: 155 MWILKSQSEENATGDCYYLLPKRKYVVGRKDCDIVITGDASISRKHCII----EVTELDGPNCTCVI-FTDTSKTGTKINDVKLKSKEETEAHDNSTIAFGKM--KFQLRHQKYLVVPSSIKKSEQKQLLEPVSKLGGRLVKEWNAETTHLVMTKIIFTIKVVYALACGKHIVTPKFFEXXXXXXXXXXXXXXXXEKNYLPVIQEQSMINMNALFYPNQERSQLFVGKIFVTLSATQHSRLKHAIQYSGGSMILQESREQKILKSISTSQTMVMALEGHEERSLSKD-QSKWMKELQNMLSTHGLRGIGESEIGLALINNSLEKYCNP 1114
MW L + A G+ Y LL +YVVGRK+C I+I D SISR H ++ VT L + V+ D SK GT +N+ K+++ I FG KF++ ++ + S + S + L + + +LGG V W E THLVM + TIK + AL CG+ IV P++F + L + K +++ P + E S+ + N QER Q+F GK F+ L+A QH +L A+ + GG L ++ T V+ ++L D Q KW++ + +ML GLR I E+EIGLA+I + + YC+P
Sbjct: 1 MWKLLPAAGP-AGGEPYRLLTGVEYVVGRKNCAILIENDQSISRNHAVLTANFSVTNLSQTDEIPVLTLKDNSKYGTFVNEEKMQNGFSRTLKSGDGITFGVFGSKFRIEYEPLVACSSCLDVSGKTALNQAILQLGGFTVNNWTEECTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVESKKQPPQI--ESFYPPLDEPSIGSKNVDLSGRQERKQIFKGKTFIFLNAKQHKKLSSAVVFGGGEARLITEENEEEHNFFLAPGTCVVDTGITNSQTLIPDCQKKWIQSIMDMLQRQGLRPIPEAEIGLAVIFMTTKNYCDP 325 The following BLAST results are available for this feature:
BLAST of TCONS_00072907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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