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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=transcript|length=2346bp
CCTTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAA
CATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACA
TAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACA
ACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGT
TCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAAT
TTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATT
TCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAAT
GAAaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATACACGA
TGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTATGCACC
AACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATCCACTT
TCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTAACAGT
AGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttttgaag
ATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGA
CCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGA
GGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATG
GAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAA
GGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAACGATC
TGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGATATTGA
TAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTC
AAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTG
TACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAAACAGT
ACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGA
GACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTT
GAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGT
TGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTC
GATGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGT
TGCCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGT
GGAATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCA
AAAGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATACACGA
TTACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCA
AATTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAA
AAAGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatca
agaccaagaattttttttacaactgcaacaaaaatggatggaaaataaAT
GCGTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAAT
GTAGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACT
TTGTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTAT
TGAATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGA
AAAAGATGGAGAAGATATTGAAATTGTTGGAAggaaaagctttatttaag
cttTTGTTGCTTTCTCTCGCGAAATGatcaaattcatgatattcatgacg
tgatgttctctacggaaataccccggttttagccagtagtggaaAATTTa
tactagacaaaagttgtagaaaatttgccactactggcaaaaacggGGGT
CTTctcgtagaaaacattacgtcatgaatatcatgaatcttACTGAATGA
ATTTCCGTGATAATGGATACTTATTATTTTGTAGGACGCATTTATCAGTT
TACACTTATCACCAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAG
CAGGTTTGGAGAAGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTT
ACGCAATTTAATCCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTT
TCGAAGCATAAATTAACTAGATTTTTACGAATTTATAAAGCTTAAC Run BLAST on NCBI protein sequence of TCONS_00072922-protein >TCONS_00072922-protein ID=TCONS_00072922-protein|Name=TCONS_00072922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp
LLFGQTDTLVILTENEHYTKELYTQQCVQRTPHKIWLVPKLMQKEYFENN
IEKWLRDGIQKFVILCSLESTSLLLELTKGLLISSLEPLFFITSRQPMYF
LGSLPSMVVAVEDGNNENSGDPTEKNFDFYIHDAIYHKWRTINYHDLMHQ
HYTSLELRDLIESYPLSSFVQENYQLQLRVVTVVEEPYMMIANFSNVFED
GSCVVGKICWKPNNKGPYCCIGYLIDMLESLEEDLMFQSYLYFVADGKYG
EIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILI
SMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGAGKQY
ALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALL
TANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVW
NRMAQFMKDYNFTNTSKAFEQLATGELQAIIHDYFIAYHNIAKDTNCRFK
FAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKC
VETSKGSSPGATNNNNVVVRIGKEYFGGVFIALCGVTLISFGILVVEYLL
NRKIHTRTYWVSERRRKRWRRY Run BLAST on NCBI transcript from alignment at scaffold_86:816110..823828+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=transcript|length=7719bp|location=Sequence derived from alignment at scaffold_86:816110..823828+ (Clytia hemisphaerica)
CCTTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAA
CATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACA
TAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACA
ACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGT
TCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAAT
TTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATT
TCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAAT
GAAaagtatttgttttttttttcaatccagCCCTCTTTAGGCAGTAAACG
TCCGAGTAAACGTCGATCTCAGATCTTGACGAGAATTCAAAACATTAATA
TTTTGTACACCGATTCAAGTGAACTGTTAAAGTATCTTTTAAAGTAAGAC
CAAGACGATCAGGCCAAGTtggtggggatggaaaaatgaCTTAATTATAA
GGTGACTGAGAATCCAAACTTTAATATTTTAAATGTAAAATGCTTTAGTG
GGTGGGTGAGGCGGTGATGGTTTCAAGGGTTCTTGTTTTTTAAAAGCATG
accaatgggcttttccagaaagacTTTttaccccactgttgaggatattg
atttttcgaagtatcgaaacccctggatatcctactttattattAAAGAC
CCCTGGatctccactcttaaaaatatgctcaccccctggatattctttct
ataaagatgcttacctcCTGGATATCGTatcttttacttgaaaagacact
ttaccccctggatatccgattcTGGAAAGTCCAATCTATTCAGTTCATAT
TAATCTTTCAGCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACAT
ACACGATGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTA
TGCACCAACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATAT
CCACTTTCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGT
AACAGTAGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgttt
ttgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAAT
AAAGGACCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTT
AGAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAA
AATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTG
GTTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAA
ACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGA
TATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAA
CCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACC
GAGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAA
AACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTC
CAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCAT
AGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAG
CATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCT
GGATTCGATGACCCAAAGGTATAACTTACTATTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATTGGTTATTTGATCGATATGCTGG
AATCGTTAGAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCC
GATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGG
TGATTTGGTTAAAGGAAAAGCCGATTTGGCTTTAGCCTCGTTAACTATAA
ACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGT
GGTATgatattgataagtatactgGAAGAGAAAGCGCTACCTTTTGCTAA
TCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAG
TCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGT
GCTGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTT
ACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGA
AAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACG
TATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGG
AATATCTGGATTCGATGACCCAAAGGTATAACTTactattcattttttta
tctACACGTATCAACCTGCGGGTGAATACACAGGATGCGAACATGTGATT
ACTccaaaaagttcacgtgattttattcccatgttccTTGTTTTACAACT
TAacgctgataactttattagtgtcaataatctcgaaccaatcagaaata
aatgtcatgtaacaagcacataaaaatttcgaataaaagcgtgatttgtt
atcagactttaattttgcaaccgaTGTATTTGCagttttttattagtttt
tgcattGACGTTTTTATGATTGGGGTgccttaaaaaaattttttgcgtcT
TTACCTGATACAAGTTTCCGCCACAATTTATTTCTTTTAATATACACTGG
TAAACTTGTTTATGGTTAATGGATAAATTCATATTTGAtttctttagaac
aacaaactatataagaaccatggccaaaatatcaagaacaagctaagaac
aatttaaggctttgtggactctaaaacacccgatttcttaggaaaattgg
caaaaacacTCACGGCAAAAATAGTCTAggcaaaatggtgaaattaagaa
catttttaagacttgaaactccaaaagttaagaacatccgatggcttcaa
aaatgttggatgttcttataaaaaacggttttctttTGTGACAAGCCTTG
ATCCCAAACATTAGGGAACTATAAATGGCTCTTTGAACGCTTTCTTCGTT
AGAAAGGATTTTTAACATACAAAGAGTTATCATTGGACCGTTTTAAAGGG
CCCGTTCAAAAATAGAAGTTCCAGTGAAATAACCTCGAAAAATTTACGAA
CAATCGAACAGATCAATTTGTTGTTCAAATGAACTTGATATCATCTCAAA
GATAAATAACTAATTGTGGTTTCATGTGTAATTCAATACGCAGTTAAATA
CATTGTTATCGTTATCGAGAATTTCGGTCGCATAGCAACAAATTAGACAA
TCCTCTAATGAAATGCATTCCTTTCGCTTTCTCATTTTTTGTATCTGGTA
AGAACCGGTATCCATGAACCTGGCATTTACTGGTTTCTTCACCCCTGTGT
GACAGACACANATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAG
GATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATGG
AGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAG
GAAAAGCCGATTTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCT
GAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATgatattgat
aagtatactgGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCA
AAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGT
ACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTA
CGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAG
ACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTG
AGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTT
GACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCG
ATGACCCAAAGGTATAACTTactattcatttttttatctACACGTATCAA
CCTGCGGGTGAATACACAGGATGCGAACATGTGATTACTccaaaaagttc
acgtgattttattcccatgttccTTGTTTTACAACTTAacgctgataact
ttattagtgtcaataatctcgaaccaatcagaaataaatgtcatgtaaca
agcacataaaaatttcgaataaaagcgtgatttgttatcagactttaatt
ttgcaaccgaTGTATTTGCagttttttattagtttttgcattGACGTTTT
TATGATTGGGGTgccttaaaaaaattttttgcgtcTTTACCTGATACAAG
TTTCCGCCACAATTTATTTCTTTTAATATACACTGGTAAACTTGTTTATG
GTTAATGGATAAATTCATATTTGAtttctttagaacaacaaactatataa
gaaccatggccaaaatatcaagaacaagctaagaacaatttaaggctttg
tggactctaaaacacccgatttcttaggaaaattggcaaaaacacTCACG
GCAAAAATAGTCTAggcaaaatggtgaaattaagaacatttttaagactt
gaaactccaaaagttaagaacatccgatggcttcaaaaatgttggatgtt
cttataaaaaacggttttctttTGTGACAAGCCTTGATCCCAAACATTAG
GGAACTATAAATGGCTCTTTGAACGCTTTCTTCGTTAGAAAGGATTTTTA
ACATACAAAGAGTTATCATTGGACCGTTTTAAAGGGCCCGTTCAAAAATA
GAAGTTCCAGTGAAATAACCTCGAAAAATTTACGAACAATCGAACAGATC
AATTTGTTGTTCAAATGAATTTGATATCATCTCAAAGATAAATAACTAAT
TGTGGTTTCATGTGTAATTCAATACGCAGTTAAATACATTGTTATCGTTA
TCGAGAATTTCGGTCGCATAGCAACAAATTAGACAATCCTCTAATGAAAT
GCATTCCTTTCGCTTTCTCATTTTTTGTATCTGGTAAGAACCGGTATCCA
TGAACCTGGCATTTACTGGTTTCTTCACCCCTGTGTGACAGACACACTGG
aatatttggccaaaatttcgtccccggtggtaaAAAGACCCTACAATTTC
ATTAAttccgttaaaaaataaatttcaatgtaaaaaattgcactccaaaa
ccatcccaactgTAGTTTTTAAAGCTTGAAACTATAGAATTTCTATCACC
ATTGGGGTTTCGTTGGAAATTTTCATTCCCACTGTGGGAGAAAGTTCATT
GGGGTGTGAGACAAGGGGTTTTGTTACTGGCAGTGGGAATGAAAAATTAG
GGAGACTTGCTTGTAACGATTACACGCTTTtgtataagaatagtgtacag
tatatccatttcatcatggatatttttaacattttggtaaaaatcatcct
aaaatgcCATAACAGTATTCTCAGGATCTAAAGCAAACCTAAATTTAAAA
CGTTATGCCaagcagtggcgtggtgggaaaatttctctggggtagccaag
gcaaatatggtgcccttttaaaagattttttgtttttggcgcccctctat
ATACGCTCATTTTACTTACGAATACAATacaaaaaagggagtgtgcgagc
gaagcgagccagaaagtttttgaggtgatgaggggcgccatttttgtttt
ttcatttgtcaatctttcgatatgggcgcctgaaaaatccttcttggcgc
cccttatttttgggcgccccctctcaaaagggctccgctgggggggcctg
gCCCCTCtggcccccctgccaccacgacACTGATGCCAAGCAAGAATAAA
GTGTTGAACAACGATAAAGAACATTTGGCCATttcgatgtaaaaataaaa
aatgccccAAATTTAGCCTAAATTTAGCATTCTTAGATTCAGTTTGTTAT
GATGGTAATATTCTTACTATATTCTTAATTCTTTTACCAATTTCATAATA
TTCTTATAGACTAAATTCTAACAAGAACTGTCactttttaaaacttgaaa
accaATTGGATTCATACTTAAATTTGATTGGTTTCCtcttatttttatat
tatttagaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCA
ACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAAT
CGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGC
GTTTGAGCAACTGGCTACTGGGTATGGACCATTATAGTCTTAACTTAAAT
CTCCCTATCTTAGAATGCCAACACAGAAATAGCACAATGAGGTTGAAGGT
TTTTGAGAAATCAGATCACTAAAAATCAGATTACAAGATGTTCACTCCTC
GTTTTCTGAAAAAGACTATTTTTGTCTCCCTTAATTTGTCAATGAATATC
AGATTGCCAATTCTGTGTTCGAGTTTATTTCACTAATCAATCATTTTAGA
GAACTGCAAGCTATCATACACGATTACTTCATTGCATACCACAATATCGC
TAAAGACACAAACTGTAGATTCAAATTTGCTGGTGAGTCGATAAAAGATG
GTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAACTAGCTAACCAAATC
TCCACGctaattttgaaatatcaagaccaagaattttttttacaactgca
acaaaaatggatggaaaataaATGCGTTGAAACGTCTAAAGGATCGTCGC
CAGGGGCAACCAATAATAACAATGTAGTCGTTCGAATCGGTAAAGAATAT
TTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAActttaatttcttttgg
aatATTGGTTGTAGAATATTTATTGAATCGAAAAATTCACACAAGAACTT
ATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGAAGATATTGAAATTGT
TGGAAggaaaagctttatttaagcttTTGTTGCTTTCTCTCGCGAAATGa
tcaaattcatgatattcatgacgtgatgttctctacggaaataccccggt
tttagccagtagtggaaAATTTatactagacaaaagttgtagaaaatttg
ccactactggcaaaaacggGGGTCTTctcgtagaaaacattacgtcatga
atatcatgaatcttACTGAATGAATTTCCGTGATAATGGATACTTATTAT
TTTGTAGGACGCATTTATCAGTTTACACTTATCACCAACTCTAACACCAT
AAAGGTATCGGGTTTGAGTTAAGCAGGTTTGGAGAAGACTTCTAAGTTCT
CTTCAATGCAACGACCATGTTTTACGCAATTTAATCCGGGTAGACTGGAA
TCCAATCTTCTTTCATATAGCTTTCGAAGCATAAATTAACTAGATTTTTA
CGAATTTATAAAGCTTAAC Coding sequence (CDS) from alignment at scaffold_86:816110..823828+ >TCONS_00072922 ID=TCONS_00072922|Name=TCONS_00072922|organism=Clytia hemisphaerica|type=CDS|length=7476bp|location=Sequence derived from alignment at scaffold_86:816110..823828+ (Clytia hemisphaerica)
TTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAAATGAACA
TTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACACCACATA
AGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGAAAACAAC
ATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCTTATGTTC
GCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTATTAATTT
CAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAATGTATTTC
CTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAATGA
AaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATACACGATG
CAATATACCATAAATGGAGGACCATCAACTACCACGACCTTATGCACCAA
CATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATCCACTTTC
ATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTAACAGTAG
TTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttttgaagAT
GGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGACC
ATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGG
ATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAAATATGGA
GAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGG
AAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTG
AGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGATATTGATA
AGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAA
AGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTA
CCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAAACAGTAC
GCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGA
CATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGA
GTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTG
ACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGA
TGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTG
CCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGG
AATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATACATCAAA
AGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATACACGATT
ACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAA
TTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAA
AGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaatatcaag
accaagaattttttttacaactgcaacaaaaatggatggaaaataaATGC
GTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGT
AGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTT
GTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATATTTATTG
AATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAA
AAGATGGAGAAGATATTGATTACTATTTGGTCAAACCGATACCCTGGTTA
TTCTAACAGAAAATGAACATTATACAAAAGAGTTATACACGCAACAATGT
GTGCAAAGGACACCACATAAGATATGGTTGGTACCAAAGCTGATGCAAAA
AGAATACTTTGAAAACAACATCGAGAAATGGCTCAGAGATGGAATTCAAA
AATTTGTCATCTTATGTTCGCTGGAATCGACATCTTTGTTATTAGAATTA
ACCAAAGGTTTATTAATTTCAAGTTTAGAACCTTTATTTTTCATTACCAG
TCGACAGCCAATGTATTTCCTGGGAAGTTTACCGAGTATGGTGGTGGCTG
TTGAAGATGGCAACAATGAAaaCTCCGGTGATCCGACAGAAAAGAACTTT
GACTTCTACATACACGATGCAATATACCATAAATGGAGGACCATCAACTA
CCACGACCTTATGCACCAACATTATACCAGTCTTGAACTCCGAGACCTCA
TCGAATCATATCCACTTTCATCATTCGTACAGGAAAATTACCAACTGCAA
TTGAGGGTTGTAACAGTAGTTGAAGAACCTTATATGATGATTGCtaattt
ttcgaatgtttttgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGA
AGCCAAACAATAAAGGACCATATTGTTGCATTGGTTATTTGATCGATATG
CTGGAATCGTTAGAAGAGGATCTAATGTTTCAatcttatttatattttgt
cGCCGATGGAAAATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGG
TCGGTGATTTGGTTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACT
ATAAACACAAAACGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGT
TGGTGGTATGATATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTG
CTAATCTAGAACCTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTT
ATAGTCGTACCGAGTTGTACCGTATTAATTATTGTAATTACGGACAGGAT
AGGTGCCGGAAAACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGG
GCTTACTTTTCCAAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGT
TCGAAAGTCATAGCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTC
AACGTATACAGCATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTC
TTGGAATATCTGGATTCGATGACCCAAAGaTCAAAAATCCAACACGAGAG
TTTCGTTATGGTACAGTTGCCAACTCGGCATACACCCAATTATTTGCCAA
CAGTCAAGATCCTGTGTGGAATCGAATGGCACAGTTCATGAAAGATTACA
ATTTTACAAATACATCAAAAGCGTTTGAGCAACTGGCTACTGGAGAACTG
CAAGCTATCATACACGATTACTTCATTGCATACCACAATATCGCTAAAGA
CACAAACTGTAGATTCAAATTTGCTGGTGAGTCGATAAAAGATGGTGGTT
CAGGGTTGGCTGTACAAAAAGGGTCAAAACTAGCTAACCAAATCTCCACG
ctaattttgaaatatcaagaccaagaattttttttacaactgcaacaaaa
atggatggaaaataaATGCGTTGAAACGTCTAAAGGATCGTCGCCAGGGG
CAACCAATAATAACAATGTAGTCGTTCGAATCGGTAAAGAATATTTTGGG
GGAGTTTTTATTGCACTTTGTGGAGTAActttaatttcttttggaatATT
GGTTGTAGAATATTTATTGAATCGAAAAATTCACACAAGAACTTATTGGG
TTTCTGAAAGACGGAGAAAAAGATGGAGAAGATATTGATTACTATTTGGT
CAAACCGATACCCTGGTTATTCTAACAGAAAATGAACATTATACAAAAGA
GTTATACACGCAACAATGTGTGCAAAGGACACCACATAAGATATGGTTGG
TACCAAAGCTGATGCAAAAAGAATACTTTGAAAACAACATCGAGAAATGG
CTCAGAGATGGAATTCAAAAATTTGTCATCTTATGTTCGCTGGAATCGAC
ATCTTTGTTATTAGAATTAACCAAAGGTTTATTAATTTCAAGTTTAGAAC
CTTTATTTTTCATTACCAGTCGACAGCCAATGTATTTCCTGGGAAGTTTA
CCGAGTATGGTGGTGGCTGTTGAAGATGGCAACAATGAAaaCTCCGGTGA
TCCGACAGAAAAGAACTTTGACTTCTACATACACGATGCAATATACCATA
AATGGAGGACCATCAACTACCACGACCTTATGCACCAACATTATACCAGT
CTTGAACTCCGAGACCTCATCGAATCATATCCACTTTCATCATTCGTACA
GGAAAATTACCAACTGCAATTGAGGGTTGTAACAGTAGTTGAAGAACCTT
ATATGATGATTGCtaatttttcgaatgtttttgaagATGGTTCGTGCGTT
GTTGGTAAGATTTGCTGGAAGCCAAACAATAAAGGACCATATTGTTGCAT
TGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTTTC
AatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGAAC
GGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGATTT
AGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAGCT
ATTCACTACCTTTCCTTGTTGGTGGTATGATATTGATAAGTATGCTGGAA
GAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCACT
TGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAATTA
TTGTAATTACGGACAGGATAGGTGCCGGAAAACAGTACGCTCTTCGTGAG
AGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGTAA
AAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTATGT
TTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATAGT
GTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAGaT
CAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGCAT
ACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGGCA
CAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAGCA
ACTGGCTACTGGAGAACTGCAAGCTATCATACACGATTACTTCATTGCAT
ACCACAATATCGCTAAAGACACAAACTGTAGATTCAAATTTGCTGGTGAG
TCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAACT
AGCTAACCAAATCTCCACGctaattttgaaatatcaagaccaagaatttt
ttttacaactgcaacaaaaatggatggaaaataaATGCGTTGAAACGTCT
AAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGTAGTCGTTCGAAT
CGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAActt
taatttcttttggaatATTGGTTGTAGAATATTTATTGAATCGAAAAATT
CACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGAAG
ATATTGATTACTATTTGGTCAAACCGATACCCTGGTTATTCTAACAGAAA
ATGAACATTATACAAAAGAGTTATACACGCAACAATGTGTGCAAAGGACA
CCACATAAGATATGGTTGGTACCAAAGCTGATGCAAAAAGAATACTTTGA
AAACAACATCGAGAAATGGCTCAGAGATGGAATTCAAAAATTTGTCATCT
TATGTTCGCTGGAATCGACATCTTTGTTATTAGAATTAACCAAAGGTTTA
TTAATTTCAAGTTTAGAACCTTTATTTTTCATTACCAGTCGACAGCCAAT
GTATTTCCTGGGAAGTTTACCGAGTATGGTGGTGGCTGTTGAAGATGGCA
ACAATGAAaaCTCCGGTGATCCGACAGAAAAGAACTTTGACTTCTACATA
CACGATGCAATATACCATAAATGGAGGACCATCAACTACCACGACCTTAT
GCACCAACATTATACCAGTCTTGAACTCCGAGACCTCATCGAATCATATC
CACTTTCATCATTCGTACAGGAAAATTACCAACTGCAATTGAGGGTTGTA
ACAGTAGTTGAAGAACCTTATATGATGATTGCtaatttttcgaatgtttt
tgaagATGGTTCGTGCGTTGTTGGTAAGATTTGCTGGAAGCCAAACAATA
AAGGACCATATTGTTGCATTGGTTATTTGATCGATATGCTGGAATCGTTA
GAAGAGGATCTAATGTTTCAatcttatttatattttgtcGCCGATGGAAA
ATATGGAGAAATCGTGAACGGTTCTTGGGTTGGCATGGTCGGTGATTTGG
TTAAAGGAAAAGCCGATTTAGCTTTAGCCTCGTTAACTATAAACACAAAA
CGATCTGAGGCTGTAAGCTATTCACTACCTTTCCTTGTTGGTGGTATGAT
ATTGATAAGTATGCTGGAAGAGAAAGCGCTACCTTTTGCTAATCTAGAAC
CTTTCAAAGCTATCGCACTTGATTTATGGATTGGAGTTATAGTCGTACCG
AGTTGTACCGTATTAATTATTGTAATTACGGACAGGATAGGTGCCGGAAA
ACAGTACGCTCTTCGTGAGAGTTTTACCTACATTATGGGCTTACTTTTCC
AAAGAGACATGGGCGGTAAAAATCCAATTAGTTGGAGTTCGAAAGTCATA
GCTTTGAGTGTTGCTATGTTTACCTTGGTTGTCATGTCAACGTATACAGC
ATTGTTGACAGCAAATAGTGTAACGTTTACACGAAGTCTTGGAATATCTG
GATTCGATGACCCAAAGaTCAAAAATCCAACACGAGAGTTTCGTTATGGT
ACAGTTGCCAACTCGGCATACACCCAATTATTTGCCAACAGTCAAGATCC
TGTGTGGAATCGAATGGCACAGTTCATGAAAGATTACAATTTTACAAATA
CATCAAAAGCGTTTGAGCAACTGGCTACTGGAGAACTGCAAGCTATCATA
CACGATTACTTCATTGCATACCACAATATCGCTAAAGACACAAACTGTAG
ATTCAAATTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGGTTGGCTG
TACAAAAAGGGTCAAAACTAGCTAACCAAATCTCCACGctaattttgaaa
tatcaagaccaagaattttttttacaactgcaacaaaaatggatggaaaa
taaATGCGTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACCAATAATA
ACAATGTAGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGTTTTTATT
GCACTTTGTGGAGTAActttaatttcttttggaatATTGGTTGTAGAATA
TTTATTGAATCGAAAAATTCACACAAGAACTTATTGGGTTTCTGAAAGAC
GGAGAAAAAGATGGAGAAGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072922-exon-scaffold_86-1491911889:816110..816464 | TCONS_00072922-exon-scaffold_86-1491911889:816110..816464 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1510915933:816110..816464 | TCONS_00072922-exon-scaffold_86-1510915933:816110..816464 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1575043694:816110..816464 | TCONS_00072922-exon-scaffold_86-1575043694:816110..816464 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1491911889:817021..817927 | TCONS_00072922-exon-scaffold_86-1491911889:817021..817927 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1510915933:817021..817927 | TCONS_00072922-exon-scaffold_86-1510915933:817021..817927 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1575043694:817021..817927 | TCONS_00072922-exon-scaffold_86-1575043694:817021..817927 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1491911889:822517..822680 | TCONS_00072922-exon-scaffold_86-1491911889:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1510915933:822517..822680 | TCONS_00072922-exon-scaffold_86-1510915933:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1575043694:822517..822680 | TCONS_00072922-exon-scaffold_86-1575043694:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1491911889:822909..823828 | TCONS_00072922-exon-scaffold_86-1491911889:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1510915933:822909..823828 | TCONS_00072922-exon-scaffold_86-1510915933:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072922-exon-scaffold_86-1575043694:822909..823828 | TCONS_00072922-exon-scaffold_86-1575043694:822909..823828 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:816110..823828 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004970 | ionotropic glutamate receptor activity |
| GO:0005234 | extracellular-glutamate-gated ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
| molecular_function |
GO:0004970 |
ionotropic glutamate receptor activity |
Blast
BLAST of TCONS_00072922 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 196.438 bits (498), Expect = 6.077e-52 Identity = 137/482 (28.42%), Postives = 221/482 (45.85%), Query Frame = 3
Query: 513 QENYQLQLRVVTVVEEPYMMIANFSNVFEDGSCVVGKICWKP------------------NNKGPY----CCIGYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISMLEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWV 1835
Q +L LRVVT++E P++ V ++G C G++C P N+ P CC GY ID+LE + ED+ F LY V DGKYG NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF + ++ + A P + +W+G+ V T + + + + K ++ + LLF R + K P W+ + + A+F + +STYTA L A V +SG DPK+ +P++ FR+GTV S+ S + M ++M+ YN T E L +L A I D + + ++ D +C+ G+ G G+ + S L IS LI +Y+ F L KW + V K S +++G ++F G+F+ LC G++ L + G +V LL +I ++ YW+
Sbjct: 508 QHPSKLHLRVVTLIEHPFVFT---REVDDEGLCPAGQLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSFAVTE-----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL 973
The following BLAST results are available for this feature:
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