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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072924 ID=TCONS_00072924|Name=TCONS_00072924|organism=Clytia hemisphaerica|type=transcript|length=1684bp
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT
TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA
ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT
TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG
CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG
AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA
CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT
TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG
AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT
AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT
GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA
GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG
aTCAAAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGC
ATACACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGG
CACAGTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAG
CAACTGGCTACTGGAGAACTGCAAGCTATCATACACGATTACTTCATTGC
ATACCACAATATCGCTAAAGACACAAACTGTAGATTCAAATTTGCTGGTG
AGTCGATAAAAGATGGTGGTTCAGGGTTGGCTGTACAAAAAGGGTCAAAA
CTAGCTAACCAAATCTCCACGctaattttgaaatatcaagaccaagaatt
ttttttacaactgcaacaaaaatggatggaaaataaATGCGTTGAAACGT
CTAAAGGATCGTCGCCAGGGGCAACCAATAATAACAATGTAGTCGTTCGA
ATCGGTAAAGAATATTTTGGGGGAGTTTTTATTGCACTTTGTGGAGTAAc
tttaatttcttttggaatATTGGTTGTAGAATATTTATTGAATCGAAAAA
TTCACACAAGAACTTATTGGGTTTCTGAAAGACGGAGAAAAAGATGGAGA
AGATATTGAAATTGTTGGAAggaaaagctttatttaagcttTTGTTGCTT
TCTCTCGCGAAATGatcaaattcatgatattcatgacgtgatgttctcta
cggaaataccccggttttagccagtagtggaaAATTTatactagacaaaa
gttgtagaaaatttgccactactggcaaaaacggGGGTCTTctcgtagaa
aacattacgtcatgaatatcatgaatcttACTGAATGAATTTCCGTGATA
ATGGATACTTATTATTTTGTAGGACGCATTTATCAGTTTACACTTATCAC
CAACTCTAACACCATAAAGGTATCGGGTTTGAGTTAAGCAGGTTTGGAGA
AGACTTCTAAGTTCTCTTCAATGCAACGACCATGTTTTACGCAATTTAAT
CCGGGTAGACTGGAATCCAATCTTCTTTCATATAGCTTTCGAAGCATAAA
TTAACTAGATTTTTACGAATTTATAAAGCTTAAC Run BLAST on NCBI transcript from alignment at scaffold_86:819821..823828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072924 ID=TCONS_00072924|Name=TCONS_00072924|organism=Clytia hemisphaerica|type=transcript|length=4008bp|location=Sequence derived from alignment at scaffold_86:819821..823828+ (Clytia hemisphaerica)
ATTGGTTATTTGATCGATATGCTGGAATCGTTAGAAGAGGATCTAATGTT
TCAatcttatttatattttgtcGCCGATGGAAAATATGGAGAAATCGTGA
ACGGTTCTTGGGTTGGCATGGTCGGTGATTTGGTTAAAGGAAAAGCCGAT
TTGGCTTTAGCCTCGTTAACTATAAACACAAAACGATCTGAGGCTGTAAG
CTATTCACTACCTTTCCTTGTTGGTGGTATgatattgataagtatactgG
AAGAGAAAGCGCTACCTTTTGCTAATCTAGAACCTTTCAAAGCTATCGCA
CTTGATTTATGGATTGGAGTTATAGTCGTACCGAGTTGTACCGTATTAAT
TATTGTAATTACGGACAGGATAGGTGCTGGAAAACAGTACGCTCTTCGTG
AGAGTTTTACCTACATTATGGGCTTACTTTTCCAAAGAGACATGGGCGGT
AAAAATCCAATTAGTTGGAGTTCGAAAGTCATAGCTTTGAGTGTTGCTAT
GTTTACCTTGGTTGTCATGTCAACGTATACAGCATTGTTGACAGCAAATA
GTGTAACGTTTACACGAAGTCTTGGAATATCTGGATTCGATGACCCAAAG
GTATAACTTactattcatttttttatctACACGTATCAACCTGCGGGTGA
ATACACAGGATGCGAACATGTGATTACTccaaaaagttcacgtgatttta
ttcccatgttccTTGTTTTACAACTTAacgctgataactttattagtgtc
aataatctcgaaccaatcagaaataaatgtcatgtaacaagcacataaaa
atttcgaataaaagcgtgatttgttatcagactttaattttgcaaccgaT
GTATTTGCagttttttattagtttttgcattGACGTTTTTATGATTGGGG
TgccttaaaaaaattttttgcgtcTTTACCTGATACAAGTTTCCGCCACA
ATTTATTTCTTTTAATATACACTGGTAAACTTGTTTATGGTTAATGGATA
AATTCATATTTGAtttctttagaacaacaaactatataagaaccatggcc
aaaatatcaagaacaagctaagaacaatttaaggctttgtggactctaaa
acacccgatttcttaggaaaattggcaaaaacacTCACGGCAAAAATAGT
CTAggcaaaatggtgaaattaagaacatttttaagacttgaaactccaaa
agttaagaacatccgatggcttcaaaaatgttggatgttcttataaaaaa
cggttttctttTGTGACAAGCCTTGATCCCAAACATTAGGGAACTATAAA
TGGCTCTTTGAACGCTTTCTTCGTTAGAAAGGATTTTTAACATACAAAGA
GTTATCATTGGACCGTTTTAAAGGGCCCGTTCAAAAATAGAAGTTCCAGT
GAAATAACCTCGAAAAATTTACGAACAATCGAACAGATCAATTTGTTGTT
CAAATGAATTTGATATCATCTCAAAGATAAATAACTAATTGTGGTTTCAT
GTGTAATTCAATACGCAGTTAAATACATTGTTATCGTTATCGAGAATTTC
GGTCGCATAGCAACAAATTAGACAATCCTCTAATGAAATGCATTCCTTTC
GCTTTCTCATTTTTTGTATCTGGTAAGAACCGGTATCCATGAACCTGGCA
TTTACTGGTTTCTTCACCCCTGTGTGACAGACACACTGGaatatttggcc
aaaatttcgtccccggtggtaaAAAGACCCTACAATTTCATTAAttccgt
taaaaaataaatttcaatgtaaaaaattgcactccaaaaccatcccaact
gTAGTTTTTAAAGCTTGAAACTATAGAATTTCTATCACCATTGGGGTTTC
GTTGGAAATTTTCATTCCCACTGTGGGAGAAAGTTCATTGGGGTGTGAGA
CAAGGGGTTTTGTTACTGGCAGTGGGAATGAAAAATTAGGGAGACTTGCT
TGTAACGATTACACGCTTTtgtataagaatagtgtacagtatatccattt
catcatggatatttttaacattttggtaaaaatcatcctaaaatgcCATA
ACAGTATTCTCAGGATCTAAAGCAAACCTAAATTTAAAACGTTATGCCaa
gcagtggcgtggtgggaaaatttctctggggtagccaaggcaaatatggt
gcccttttaaaagattttttgtttttggcgcccctctatATACGCTCATT
TTACTTACGAATACAATacaaaaaagggagtgtgcgagcgaagcgagcca
gaaagtttttgaggtgatgaggggcgccatttttgttttttcatttgtca
atctttcgatatgggcgcctgaaaaatccttcttggcgccccttattttt
gggcgccccctctcaaaagggctccgctgggggggcctggCCCCTCtggc
ccccctgccaccacgacACTGATGCCAAGCAAGAATAAAGTGTTGAACAA
CGATAAAGAACATTTGGCCATttcgatgtaaaaataaaaaatgccccAAA
TTTAGCCTAAATTTAGCATTCTTAGATTCAGTTTGTTATGATGGTAATAT
TCTTACTATATTCTTAATTCTTTTACCAATTTCATAATATTCTTATAGAC
TAAATTCTAACAAGAACTGTCactttttaaaacttgaaaaccaATTGGAT
TCATACTTAAATTTGATTGGTTTCCtcttatttttatattatttagaTCA
AAAATCCAACACGAGAGTTTCGTTATGGTACAGTTGCCAACTCGGCATAC
ACCCAATTATTTGCCAACAGTCAAGATCCTGTGTGGAATCGAATGGCACA
GTTCATGAAAGATTACAATTTTACAAATACATCAAAAGCGTTTGAGCAAC
TGGCTACTGGGTATGGACCATTATAGTCTTAACTTAAATCTCCCTATCTT
AGAATGCCAACACAGAAATAGCACAATGAGGTTGAAGGTTTTTGAGAAAT
CAGATCACTAAAAATCAGATTACAAGATGTTCACTCCTCGTTTTCTGAAA
AAGACTATTTTTGTCTCCCTTAATTTGTCAATGAATATCAGATTGCCAAT
TCTGTGTTCGAGTTTATTTCACTAATCAATCATTTTAGAGAACTGCAAGC
TATCATACACGATTACTTCATTGCATACCACAATATCGCTAAAGACACAA
ACTGTAGATTCAAATTTGCTGGTGAGTCGATAAAAGATGGTGGTTCAGGG
TTGGCTGTACAAAAAGGGTCAAAACTAGCTAACCAAATCTCCACGctaat
tttgaaatatcaagaccaagaattttttttacaactgcaacaaaaatgga
tggaaaataaATGCGTTGAAACGTCTAAAGGATCGTCGCCAGGGGCAACC
AATAATAACAATGTAGTCGTTCGAATCGGTAAAGAATATTTTGGGGGAGT
TTTTATTGCACTTTGTGGAGTAActttaatttcttttggaatATTGGTTG
TAGAATATTTATTGAATCGAAAAATTCACACAAGAACTTATTGGGTTTCT
GAAAGACGGAGAAAAAGATGGAGAAGATATTGAAATTGTTGGAAggaaaa
gctttatttaagcttTTGTTGCTTTCTCTCGCGAAATGatcaaattcatg
atattcatgacgtgatgttctctacggaaataccccggttttagccagta
gtggaaAATTTatactagacaaaagttgtagaaaatttgccactactggc
aaaaacggGGGTCTTctcgtagaaaacattacgtcatgaatatcatgaat
cttACTGAATGAATTTCCGTGATAATGGATACTTATTATTTTGTAGGACG
CATTTATCAGTTTACACTTATCACCAACTCTAACACCATAAAGGTATCGG
GTTTGAGTTAAGCAGGTTTGGAGAAGACTTCTAAGTTCTCTTCAATGCAA
CGACCATGTTTTACGCAATTTAATCCGGGTAGACTGGAATCCAATCTTCT
TTCATATAGCTTTCGAAGCATAAATTAACTAGATTTTTACGAATTTATAA
AGCTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072924-exon-scaffold_86-1491911889:819821..820420 | TCONS_00072924-exon-scaffold_86-1491911889:819821..820420 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1510915933:819821..820420 | TCONS_00072924-exon-scaffold_86-1510915933:819821..820420 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1575043694:819821..820420 | TCONS_00072924-exon-scaffold_86-1575043694:819821..820420 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1491911889:822517..822680 | TCONS_00072924-exon-scaffold_86-1491911889:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1510915933:822517..822680 | TCONS_00072924-exon-scaffold_86-1510915933:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1575043694:822517..822680 | TCONS_00072924-exon-scaffold_86-1575043694:822517..822680 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1491911889:822909..823828 | TCONS_00072924-exon-scaffold_86-1491911889:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1510915933:822909..823828 | TCONS_00072924-exon-scaffold_86-1510915933:822909..823828 | Clytia hemisphaerica | exon |
| TCONS_00072924-exon-scaffold_86-1575043694:822909..823828 | TCONS_00072924-exon-scaffold_86-1575043694:822909..823828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:819821..823828 + |
Blast
BLAST of TCONS_00072924 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 3.893e-45 Identity = 119/409 (29.10%), Postives = 193/409 (47.19%), Query Frame = 1
Query: 4 GYLIDMLESLEEDLMFQSYLYFVADGKYGEIVNGSWVGMVGDLVKGKADLALASLTINTKRSEAVSYSLPFLVGGMILISILEEKALPFANLEPFKAIALDLWIGVIVVPSCTVLIIVITDRIGA----------GKQYALRESFTYIMGLLFQRDMGGKNPISWSSKVIALSVAMFTLVVMSTYTALLTANSVTFTRSLGISGFDDPKIKNPTREFRYGTVANSAYTQLFANSQDPVWNRMAQFMKDYNFTNTSKAFEQLATG--ELQAIIHDYFIAYHNIAKDTNCRFKFAGESIKDGGSGLAVQKGSKLANQISTLILKYQDQEFFLQLQQKWMENKCVETSKGSSPGATNNNNVVVRIGKEYFGGVFIALC---GVT-LISFGILVVEYLLNRKIHTRT---YWV 1173
GY ID+LE + ED+ F LY V DGKYG NG W G+VGDL++G A +A+ S +INT RS+ + ++ PF + ++ + A P + +W+G+ V T + + + + K ++ + LLF R + K P W+ + + A+F + +STYTA L A V +SG DPK+ +P++ FR+GTV S+ S + M ++M+ YN T E L +L A I D + + ++ D +C+ G+ G G+ + S L IS LI +Y+ F L KW + V K S T +++G ++F G+F+ LC G++ L + G +V LL +I ++ YW+
Sbjct: 578 GYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIGAF--MWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS----FPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWY--RVVPCGKRSF-AVTE----TLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIVYRLLLPRIKNKSKLQYWL 973
The following BLAST results are available for this feature:
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