Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072991 ID=TCONS_00072991|Name=TCONS_00072991|organism=Clytia hemisphaerica|type=transcript|length=2452bpRun BLAST on NCBI protein sequence of TCONS_00072991-protein >TCONS_00072991-protein ID=TCONS_00072991-protein|Name=TCONS_00072991-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp MASPGNDFDGYEPYSPSLSEGIVHQKKKLRSWLVERLDVNDCPGCSWIKTRun BLAST on NCBI transcript from alignment at scaffold_86:392598..400477- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072991 ID=TCONS_00072991|Name=TCONS_00072991|organism=Clytia hemisphaerica|type=transcript|length=7880bp|location=Sequence derived from alignment at scaffold_86:392598..400477- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:392598..400477- >TCONS_00072991 ID=TCONS_00072991|Name=TCONS_00072991|organism=Clytia hemisphaerica|type=CDS|length=11928bp|location=Sequence derived from alignment at scaffold_86:392598..400477- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072991 vs. Swiss-Prot (Human)
Match: IRF8 (Interferon regulatory factor 8 OS=Homo sapiens GN=IRF8 PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 3.111e-26 Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = 3 Query: 144 KKLRSWLVERLDVNDCPGCSWIKTNGKVFRLSWKHYGRPGFDEERDATIFRKWAEHTGRYQQGDPPDISTWKTRFRNALHKMPDIEEMTNYHQLDGNDPFRVYRFRTPEELEIIKNKANDSNHMN 518 ++LR WL+E++D + PG W +FR+ WKH G+ +++E DA+IF+ WA G++++GD + +TWKTR R AL+K PD EE+T+ QLD ++P++VYR PEE + K + +N Sbjct: 8 RRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGDKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRI-VPEEEQKCKLGVATAGCVN 131 The following BLAST results are available for this feature:
BLAST of TCONS_00072991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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