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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=transcript|length=2434bpRun BLAST on NCBI protein sequence of TCONS_00073008-protein >TCONS_00073008-protein ID=TCONS_00073008-protein|Name=TCONS_00073008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp MYGAIILLIFCTWNEQFSYVFGETSDIGYGMLTRRQGVELDHKEIVDLGNRun BLAST on NCBI transcript from alignment at scaffold_86:738360..747724- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=transcript|length=9365bp|location=Sequence derived from alignment at scaffold_86:738360..747724- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:738360..747724- >TCONS_00073008 ID=TCONS_00073008|Name=TCONS_00073008|organism=Clytia hemisphaerica|type=CDS|length=14487bp|location=Sequence derived from alignment at scaffold_86:738360..747724- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073008 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 4.219e-49 Identity = 137/437 (31.35%), Postives = 211/437 (48.28%), Query Frame = 1
Query: 13 LC*VRFTKSKNYTFS*RIKISFENMY--GAIILLIFCTWNEQFSYVFGETSDIG-------------YGMLTRRQGVELDHKEIVDLGNGKRVEVITKALKPLLFEIPDFLSEEECDHIIKRALDPQEGGIKLFDSQAKGGLTSNETLKAVGVNGQSLGWLGRYEGWDKDGDGNITIEEIISIAHLTKTLVMEEPDIRDIFKAV-GQPSILDDDIITKEEFQLLSTLAVEKYLDNLWQNHPRFKPRTSQQAWLFMEQWLDPTVHNIRERLVRLSGLPREIIYGGEMLQVVHYTTNGHYHAHHDSETHLSDHVPCCHQYSGDTLGSTGECKLCRFLTFMMYLNDVEDGGQTAFPMAHEEVFDTDQIRQHGNASTDKYNLSYGCKIANLVVKPKKGKAVLWYNHLVNQTDGWMGELDPFSLHGGCDVKSGEKWISNMWI 1275
LC R S+ Y + + F ++Y + LL+F ++ E+SD G G LTR +G+++ H+ V L + + T +LKPLLFEIP FL++EEC II A Q G+ Q L + E +A+ + L + D++ DG++ + E+++ L M I++++ A+ P D +++ +EF + KY+ + R S WL+ + + IR+R++RL+ L EI+ E LQVV Y GHYHAH DS + + C H E CR++T + YLN+V GG+T FP+A +D + Q D + C NL VKP++G AV WYN+L + GW+G++D +SLHGGC V G KWI+N WI
Sbjct: 49 LCKPRGICSRAYFL---VLMVFVHLYLGNVLALLLFVHYSNG-----DESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLA---QMKGL-----QRSQILPTEEYEEAMST--MQVSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPD--GDGVLSLQEFSNMDLRDFHKYMRSHKAESSELV-RNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETI-CSHTKLVANESVPFETS-CRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQD---DVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPD-GQGWVGDVDDYSLHGGCLVTRGTKWIANNWI 458 The following BLAST results are available for this feature:
BLAST of TCONS_00073008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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