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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073053 ID=TCONS_00073053|Name=TCONS_00073053|organism=Clytia hemisphaerica|type=transcript|length=2572bpRun BLAST on NCBI protein sequence of TCONS_00073053-protein >TCONS_00073053-protein ID=TCONS_00073053-protein|Name=TCONS_00073053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=625bp MKLVILIAAFIQLSLAGKDPILGKDVKLSPQQLPGKLYFGDMELNKKQEDRun BLAST on NCBI transcript from alignment at scaffold_86:1090236..1102299- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073053 ID=TCONS_00073053|Name=TCONS_00073053|organism=Clytia hemisphaerica|type=transcript|length=12064bp|location=Sequence derived from alignment at scaffold_86:1090236..1102299- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:1090236..1102299- >TCONS_00073053 ID=TCONS_00073053|Name=TCONS_00073053|organism=Clytia hemisphaerica|type=CDS|length=26292bp|location=Sequence derived from alignment at scaffold_86:1090236..1102299- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073053 vs. Swiss-Prot (Human)
Match: TLL2 (Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.667e-29 Identity = 76/195 (38.97%), Postives = 104/195 (53.33%), Query Frame = 2
Query: 278 WTNAVIPYVIDCSLENLPDAVDSIKRAMAEWEAKTCIRFVKHTNEKYKLTF-FRDTHCWGNVGMVSYS--RISVGYGCEYQHVMTHEIGHVVGFYHEQNRKDRDQYVTVHWENIGQFKSAFDIVK----NTDSLGVPYDYESIMHYPWNAFSAN-GRNTMTPKQDTRGQTPYVA----LSDLDAKQTSLMYNCPA 826
W VIPYVI + A+ K+AM WE TC+ F++ T+E+ + F +R C VG IS+G C+ ++ HE+GHVVGF+HE R DRDQ+VT+ ENI Q ++ +K SLG YD++SIMHY N FS +T+ P+QD G P + LS D Q +Y CPA
Sbjct: 159 WPGGVIPYVIGGNFTGSQRAI--FKQAMRHWEKHTCVTFIERTDEESFIVFSYRTCGCCSYVGRRGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENI-QPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQDDNGVRPTIGQRVRLSQGDIAQARKLYKCPA 350 The following BLAST results are available for this feature:
BLAST of TCONS_00073053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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