TCONS_00073064 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073064
Unique NameTCONS_00073064
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073064 ID=TCONS_00073064|Name=TCONS_00073064|organism=Clytia hemisphaerica|type=transcript|length=2210bp
GTGATTTTGACGAGAACTTTTCGCTTGcttgaaagtttcaaatttttatc
ttaAATAAACCTCCATTACGTTTTAATTCAACGATTTAATGAATTCTGGT
CTACATTGTTCACAAAAATATTATCATCTGACAGTTCTACAAGACTTCGA
CTTGGTATATAAAGATTTGAATTTCCCAACGAAAGGATGGTGAACTGCAG
GCTGAttctttttatgatgctgtctTTCAGCTGGTTGCTAAAGACATCAC
ACGGTCAAATCCTTGACATACCTGAAAATAACCACGGCGTGAAACCTGAC
GTCCTTATCGACCAAGAAATGAATCCAGTCATTGGTAACCTCATCAAAAC
CGTCCCAAGAATCTCGACTGAAAATAAAGTTACGTTGGATTTTGTTATCC
ATAGTTTACCAAGTGGTAGTACTGCAAATCTAATTCGTTTGAATGGAGAT
TCTATTAATGGAGTTGGAGGAGATATTCCTAAAGTCTTTATACATCCCTC
ACCACAAAGAGCTATTCAAGTTCAAACAGCTATCAATGGTACGTTGCATT
CTTTTCGAATTGAATTAGGAGCTGCAGCCATTGATCATCACCAAAGACTT
GAAATTGAACAACGCTACTTAAAAGATGGAATTTACAAATTTGTGATACT
GCTAAATGGAAATGTAATCCATTCAACAACAAATGCTGACGCTAAACAGT
TTTATAAtgttaaatgttttgtttccggaCCAGGATCACCAAGGCTTGCA
GATGCAACTATTAGTTATTTCAGCTTGACTAATTTTCTATGAGATGGAAG
AAGAATGGGCTCttcctgaaaaaaagttaaatatcggaggtggaggatat
ataattttttggaaatttgccccctcccccggacaagcatcagtcgACCA
CCTAGACATTCAAAATTATCCTCAAACAGAGCAATGTTACCACCCGGATT
TTGTAGATTTGTCACTatcccccggacactatatcctccacccccgcGTA
CGGATATTTTCTTGAAGAGCccaatataatttttcattgaacTATAAAGA
CTGAAACGGATGGGCGTgtcaaaaagtatcaaaacttCTACAGGTTCCCA
taatgtgcgagccataagggttcATTTAAGACACTCCTATCTCACAGTTT
CCTAAAGAGGGGATAAagattcctattgaaatcccaatgcaGATggtaat
tctattgttccaaggttaaaaaatccagtgggaatggttttggagtgcaa
ttctttaaacattggagatgaaaatcaaagtgaatttcccagtggggctg
aaattttagggtattttcccactaGGGACGaaactttttccaaattttcc
agtagggctggggtcccagcgggcaTGTGACGTAGGGGGTATTTTAAGAG
TATAAAAATCATTATAAAGCAATTGAGTCTCTATAAGGGTTCCAAAataa
cgaaaatcaaaaatcgatcTCCTTAAAGGGTCTTCTTCTTTCTTAAAATT
TGGActaagatttaaaaattttggttgaaatttaggcagaaaagtctatg
taagggtggcaaatttttctaaaaatagacataattttcgaaattcagtc
tctcaaaagtatcgattttcaaactttggctcggacaaacccgtcacctc
gcaaatcTAGTACCCcggtagacgatgttatcgtccgttacagtgatagt
aaaggcggaaaaaatggcggtatggcgttatggcggtatacggaaaaaat
tcggcgggagagtttcgaagaaagaaaagactagcaactctaccgactgt
aaactcttttcggcaaaaaaacccgtttgcgaattttcttcggctttggg
cttttttctttgattgtgattcgtcttagactataacatagtctagtaCC
CCGGTCTCAtagtatgtatgtatgtaatagtttatttcaagttgacgaac
aggtagcaacaaaggctaataaaagtcaacgctactttaatttgtaaggt
gattacaaaaagcCGACACCGTCAATATAGGTCCGGCAGTTTCTACACGG
GCAGATGAAGGCCTCCACTGCTTAatcttttctttgaaaatactaAGATC
AACTATATCTCTATACTCATAGTCAGAGAAGATTAAGTTTTTTGTACTTA
ATATATGTAATAACTTACAATCGagctaaaaaaaatttgagcgAGAAAAA
AACTTCGAGA
Run BLAST on NCBI

protein sequence of TCONS_00073064-protein

>TCONS_00073064-protein ID=TCONS_00073064-protein|Name=TCONS_00073064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MVNCRLILFMMLSFSWLLKTSHGQILDIPENNHGVKPDVLIDQEMNPVIG
NLIKTVPRISTENKVTLDFVIHSLPSGSTANLIRLNGDSINGVGGDIPKV
FIHPSPQRAIQVQTAINGTLHSFRIELGAAAIDHHQRLEIEQRYLKDGIY
KFVILLNGNVIHSTTNADAKQFYNVKCFVSGPGSPRLADATISYFSLTNF
L
Run BLAST on NCBI

transcript from alignment at scaffold_86:1220480..1224006-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073064 ID=TCONS_00073064|Name=TCONS_00073064|organism=Clytia hemisphaerica|type=transcript|length=3527bp|location=Sequence derived from alignment at scaffold_86:1220480..1224006- (Clytia hemisphaerica)
GTGATTTTGACGAGAACTTTTCGCTTGCTTGAAAGTTTCAAATTTTTATC
TTAAATAAACCTCCATTACGTTTTAATTCAACGATTTAATGAATTCTGGT
CTACATTGTTCACAAAAATATTATCATCTGACAGTTCTACAAGACTTCGA
CTTGGTATATAAAGATTTGAATTTCCCAACGAAAGGATGGTGAACTGCAG
GCTGATTCTTTTTATGATGCTGTCTTTCAGCTGGTTGCTAAAGGTACTTC
GTTTCTCTTTTATTATATTTCCTCGAAATTGATTCCACTTTAAGTTTCAC
AGAATGTCTCTCTGGAAAAATACTCAAAATTTTGTTATCCATTTTATGGA
TTTCTTTTGCATTGAGCCTCGTATTTAACAATGTAATTTTTTTGGAGCCC
AACCGATTAAAGCCTAAAGGAAAAAGATTTTCCACCCCATAGGTATGTAT
CCATTTCATTTTAACCCCACAAGCTTTTACCGGGTCACTGAAACAGGGGT
GTGTTCGAGTATGGTCAATAAAGTTGGACTGGCACCGATTACCCTTGGGA
AATTTAATCGAAGGATAGAGTCGAGAAGTTTAACTAATAACTGTATTACA
CTTCATGATTATCTCAAAATTTTGGTGGAGCTCCAGCAAGTTTAAGTCCA
AAAAACTTGAAATGCAGTCTGGATAACGATTAAGCAAATACCGCATCTAG
ATTGGGGGGGGGGGCACTCAAGGTAAGTAAGCTATCGTAGATGCGTTCCT
TAAGGGTACGTTTTTAAGTTTCCTAAATTGCTCTGTAAGGAGAAATGAGA
TAAAACACTGTAGTGGTGTAAAAATAGTGAGAAAAACGAATTGTGGAATA
ATTTGTGCGAAATTGTGAATAATTTGACGACAAATGTAACAAAAGGTGCT
CAAACTTTTACTAAGTTTTATTTCTCGGCACTGTATGTAAAGGTTCGATT
TTGAGACCCTATTTTTGTCCGCATATGGTAGTTTTCAGATCGAGCCCCCC
CCCCGCCCTCGAGAGGAAATACCCACAAGTGGAGCTTCCATGTGCTAGTT
CGTTATGGTGTTATGGCTAACTTTTATTGAAAAGTCTTTGATTTAAACTA
TCTTTACAGACATCACACGGTCAAATCCTTGACATACCTGAAAATAACCA
CGGCGTGAAACCTGACGTCCTTATCGACCAAGGTAAATTGTTATGCTATT
AATTGATCACTTGTTTAAGACAGGCCAGGCTATGGGAACTCGTCTTTGGT
GAATTTTGTGGGATCTTGAAAACTTCTTTTTGGTAATATTCCTTCTTCCA
CGACCTAAAAACTGCTATGGCAAGGTTGAATAAGCAAATGGTGTCCAAAT
TAGTGATTTGAGGAGCTGGTCTTGCCTTTTGGCGCCCCTAAAAAAATCGG
TCACTGCCCTACTCACGCACTTTAGGCGTACAAACTTTCACGTCTAAAAT
GCCACCATACTACTGCTCTGGTGGCCATGCATGGGTTTCCATAATCGTAA
TTTTAGATTGTTTGTTTAAGGGAGCTGTGCCTGGGAGGTCTCCCTACGGG
GGAAAGGTTCGAATAGTAGAAGTCAAAACTACTGCTTTCCACTGTATAAA
TATCAAAATTTCAACATCGTTTTTTTCTTATAGAAATGAATCCAGTCATT
GGTAACCTCATCAAAACCGTCCCAAGAATCTCGACTGAAAATAAAGTTAC
GTTGGATTTTGTTATCCATAGTTTACCAAGTGGTAGTACTGCAAATCTAA
TTCGTTTGAATGGAGATTCTATTAATGGAGTTGGAGGAGATATTCCTAAA
GTCTTTATACATCCCTCACCACAAAGAGCTATTCAAGTTCAAACAGCTAT
CAATGGTACGTTGCATTCTTTTCGAATTGAATTAGGAGCTGCAGCCATTG
ATCATCACCAAAGACTTGAAATTGAACAACGCTACTTAAAAGATGGAATT
TACAAATTTGTGATACTGCTAAATGGAAATGTAATCCATTCAACAACAAA
TGCTGACGCTAAACAGTTTTATAATGTTAAATGTTTTGTTTCCGGACCAG
GATCACCAAGGCTTGCAGATGCAACTATTAGTTATTTCAGCTTGACTAAT
TTTCTATGAGATGGAAGAAGAATGGGCTCTTCCTGAAAAAAAGTTAAATA
TCGGAGGTGGAGGATATATAATTTTTTGGAAATTTGCCCCCTCCCCCGGA
CAAGCATCAGTCGACCACCTAGACATTCAAAATTATCCTCAAACAGAGCA
ATGTTACCACCCGGATTTTGTAGATTTGTCACTATCCCCCGGACACTATA
TCCTCCACCCCCGCGTACGGATATTTTCTTGAAGAGCCCAATATAATTTT
TCATTGAACTATAAAGACTGAAACGGATGGGCGTGTCAAAAAGTATCAAA
ACTTCTACAGGTTCCCATAATGTGCGAGCCATAAGGGTTCATTTAAGACA
CTCCTATCTCACAGTTTCCTAAAGAGGGGATAAAGATTCCTATTGAAATC
CCAATGCAGATGGTAATTCTATTGTTCCAAGGTTAAAAAATCCAGTGGGA
ATGGTTTTGGAGTGCAATTCTTTAAACATTGGAGATGAAAATCAAAGTGA
ATTTCCCAGTGGGGCTGAAATTTTAGGGTATTTTCCCACTAGGGACGAAA
CTTTTTCCAAATTTTCCAGTAGGGCTGGGGTCCCAGCGGGCATGTGACGT
AGGGGGTATTTTAAGAGTATAAAAATCATTATAAAGCAATTGAGTCTCTA
TAAGGGTTCCAAAATAACGAAAATCAAAAATCGATCTCCTTAAAGGGTCT
TCTTCTTTCTTAAAATTTGGACTAAGATTTAAAAATTTTGGTTGAAATTT
AGGCAGAAAAGTCTATGTAAGGGTGGCAAATTTTTCTAAAAATAGACATA
ATTTTCGAAATTCAGTCTCTCAAAAGTATCGATTTTCAAACTTTGGCTCG
GACAAACCCGTCACCTCGCAAATCTAGTACCCCGGTAGACGATGTTATCG
TCCGTTACAGTGATAGTAAAGGCGGAAAAAATGGCGGTATGGCGTTATGG
CGGTATACGGAAAAAATTCGGCGGGAGAGTTTCGAAGAAAGAAAAGACTA
GCAACTCTACCGACTGTAAACTCTTTTCGGCAAAAAAACCCGTTTGCGAA
TTTTCTTCGGCTTTGGGCTTTTTTCTTTGATTGTGATTCGTCTTAGACTA
TAACATAGTCTAGTACCCCGGTCTCATAGTATGTATGTATGTAATAGTTT
ATTTCAAGTTGACGAACAGGTAGCAACAAAGGCTAATAAAAGTCAACGCT
ACTTTAATTTGTAAGGTGATTACAAAAAGCCGACACCGTCAATATAGGTC
CGGCAGTTTCTACACGGGCAGATGAAGGCCTCCACTGCTTAATCTTTTCT
TTGAAAATACTAAGATCAACTATATCTCTATACTCATAGTCAGAGAAGAT
TAAGTTTTTTGTACTTAATATATGTAATAACTTACAATCGAGCTAAAAAA
AATTTGAGCGAGAAAAAAACTTCGAGA

Coding sequence (CDS) from alignment at scaffold_86:1220480..1224006-

>TCONS_00073064 ID=TCONS_00073064|Name=TCONS_00073064|organism=Clytia hemisphaerica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_86:1220480..1224006- (Clytia hemisphaerica)
AAATGAATCCAGTCATTGGTAACCTCATCAAAACCGTCCCAAGAATCTCG
ACTGAAAATAAAGTTACGTTGGATTTTGTTATCCATAGTTTACCAAGTGG
TAGTACTGCAAATCTAATTCGTTTGAATGGAGATTCTATTAATGGAGTTG
GAGGAGATATTCCTAAAGTCTTTATACATCCCTCACCACAAAGAGCTATT
CAAGTTCAAACAGCTATCAATGGTACGTTGCATTCTTTTCGAATTGAATT
AGGAGCTGCAGCCATTGATCATCACCAAAGACTTGAAATTGAACAACGCT
ACTTAAAAGATGGAATTTACAAATTTGTGATACTGCTAAATGGAAATGTA
ATCCATTCAACAACAAATGCTGACGCTAAACAGTTTTATAATGTTAAATG
TTTTGTTTCCGGACCAGGATCACCAAGGCTTGCAGATGCAACTATTAGTT
ATTTCAGCTTGACTAATTTTCTATGAACATCACACGGTCAAATCCTTGAC
ATACCTGAAAATAACCACGGCGTGAAACCTGACGTCCTTATCGACCAAGA
TGGTGAACTGCAGGCTGATTCTTTTTATGATGCTGTCTTTCAGCTGGTTG
CTAAAGAAATGAATCCAGTCATTGGTAACCTCATCAAAACCGTCCCAAGA
ATCTCGACTGAAAATAAAGTTACGTTGGATTTTGTTATCCATAGTTTACC
AAGTGGTAGTACTGCAAATCTAATTCGTTTGAATGGAGATTCTATTAATG
GAGTTGGAGGAGATATTCCTAAAGTCTTTATACATCCCTCACCACAAAGA
GCTATTCAAGTTCAAACAGCTATCAATGGTACGTTGCATTCTTTTCGAAT
TGAATTAGGAGCTGCAGCCATTGATCATCACCAAAGACTTGAAATTGAAC
AACGCTACTTAAAAGATGGAATTTACAAATTTGTGATACTGCTAAATGGA
AATGTAATCCATTCAACAACAAATGCTGACGCTAAACAGTTTTATAATGT
TAAATGTTTTGTTTCCGGACCAGGATCACCAAGGCTTGCAGATGCAACTA
TTAGTTATTTCAGCTTGACTAATTTTCTATGAACATCACACGGTCAAATC
CTTGACATACCTGAAAATAACCACGGCGTGAAACCTGACGTCCTTATCGA
CCAAGATGGTGAACTGCAGGCTGATTCTTTTTATGATGCTGTCTTTCAGC
TGGTTGCTAAAGAAATGAATCCAGTCATTGGTAACCTCATCAAAACCGTC
CCAAGAATCTCGACTGAAAATAAAGTTACGTTGGATTTTGTTATCCATAG
TTTACCAAGTGGTAGTACTGCAAATCTAATTCGTTTGAATGGAGATTCTA
TTAATGGAGTTGGAGGAGATATTCCTAAAGTCTTTATACATCCCTCACCA
CAAAGAGCTATTCAAGTTCAAACAGCTATCAATGGTACGTTGCATTCTTT
TCGAATTGAATTAGGAGCTGCAGCCATTGATCATCACCAAAGACTTGAAA
TTGAACAACGCTACTTAAAAGATGGAATTTACAAATTTGTGATACTGCTA
AATGGAAATGTAATCCATTCAACAACAAATGCTGACGCTAAACAGTTTTA
TAATGTTAAATGTTTTGTTTCCGGACCAGGATCACCAAGGCTTGCAGATG
CAACTATTAGTTATTTCAGCTTGACTAATTTTCTATGAACATCACACGGT
CAAATCCTTGACATACCTGAAAATAACCACGGCGTGAAACCTGACGTCCT
TATCGACCAAGATGGTGAACTGCAGGCTGATTCTTTTTATGATGCTGTCT
TTCAGCTGGTTGCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045298XLOC_045298Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073064-proteinTCONS_00073064-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073064-exon-scaffold_86-1575043694:1223764..1224006TCONS_00073064-exon-scaffold_86-1575043694:1223764..1224006Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1575043694:1222825..1222897TCONS_00073064-exon-scaffold_86-1575043694:1222825..1222897Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1575043694:1220480..1222373TCONS_00073064-exon-scaffold_86-1575043694:1220480..1222373Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1510915933:1223764..1224006TCONS_00073064-exon-scaffold_86-1510915933:1223764..1224006Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1510915933:1222825..1222897TCONS_00073064-exon-scaffold_86-1510915933:1222825..1222897Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1510915933:1220480..1222373TCONS_00073064-exon-scaffold_86-1510915933:1220480..1222373Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1491911889:1223764..1224006TCONS_00073064-exon-scaffold_86-1491911889:1223764..1224006Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1491911889:1222825..1222897TCONS_00073064-exon-scaffold_86-1491911889:1222825..1222897Clytia hemisphaericaexon
TCONS_00073064-exon-scaffold_86-1491911889:1220480..1222373TCONS_00073064-exon-scaffold_86-1491911889:1220480..1222373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1220480..1224006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.660157	0.338431	0.862935	1.44968	1.46626	1.07987	0.929993	0.962003	0.788935	0.784881	0.902069	0.980131	4.92324	5.22108	3.25439	1.89992	1.24433	1.18485	7.61682	7.11132	2.51925	2.47919	1.36585	2.57212	2.61996	3.96708	1.39697	0.889519	0.770529	0.963499
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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