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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073066 ID=TCONS_00073066|Name=TCONS_00073066|organism=Clytia hemisphaerica|type=transcript|length=1283bpRun BLAST on NCBI transcript from alignment at scaffold_86:1229087..1290713- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073066 ID=TCONS_00073066|Name=TCONS_00073066|organism=Clytia hemisphaerica|type=transcript|length=61627bp|location=Sequence derived from alignment at scaffold_86:1229087..1290713- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073066 vs. Swiss-Prot (Human)
Match: DHRS4 (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3) HSP 1 Score: 233.032 bits (593), Expect = 9.884e-73 Identity = 121/263 (46.01%), Postives = 177/263 (67.30%), Query Frame = 2
Query: 14 STRMMST-VSKR--LEGKVAIVTASTAGIGYAIAEGLAENGAKVVISSRKEKNVEEALQQLKSKDLEVSGCVCHVAKEGDRTKLLEETLKQYGQLDILVNNAGISPAFGPLLKTTSEQWDKIFSVNVKAGFQFVQEAMPHLQQT-NGSVIFNSSMAAYNPIQMIGAYSISKTAILGLVKALASECGPMGIRVNGIAPGVIETQMNEMPLSNDAYREQVLKTIPLNRFGKPSELAGLAVFLSSDEASYITGETIMVTGGVHSRL 790
S RM S+ +++R L KVA+VTAST GIG+AIA LA++GA VV+SSRK++NV++A+ L+ + L V+G VCHV K DR +L+ +K +G +DILV+NA ++P FG ++ T E WDK +NVKA + +P +++ GSV+ SS+AA++P Y++SKTA+LGL K LA E P IRVN +APG+I+T + M + E + +T+ + R G+P + AG+ FL S++ASYITGET++V GG SRL
Sbjct: 16 SVRMASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 278 The following BLAST results are available for this feature:
BLAST of TCONS_00073066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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