TCONS_00073072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073072
Unique NameTCONS_00073072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073072 ID=TCONS_00073072|Name=TCONS_00073072|organism=Clytia hemisphaerica|type=transcript|length=450bp
GTACAATTGGTCAGCAAGAAGACAAATTTTCCAGGTTTACCAACGTTGGA
AGATGTGGTTAGTGTGTTTCCATTGAGGTTAAAACTTTTATATGGTGTGC
ACGAGACCTTTCCATCTGGTTCAGCGTAACCGATATTGTCATAGCCTGGG
TTATCCATACGTTCATAATTGAAAATAGtgtatgtttttttgtaatcgGT
CGCTATGATAGCTTGAAAACGGAATAAGATGTTTCGATTATCGTAATAAG
GAACGTTATTGAAAGTGATGACAATTGcttcttttgatttaaaagatgga
gcagattttgaaagtgaaataTCTCTGTCGATCGAGTTCAATGTAGTTTG
ATCTTTTGTGGTGCGGCACAGTATATCATTTCCATGACTTCTCATGTCGT
AATTAAATGGGACGAGTACTGAGATGTAGGAGGTCAAAGATGCTCTTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_86:1243895..1246001-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073072 ID=TCONS_00073072|Name=TCONS_00073072|organism=Clytia hemisphaerica|type=transcript|length=2107bp|location=Sequence derived from alignment at scaffold_86:1243895..1246001- (Clytia hemisphaerica)
GTACAATTGGTCAGCAAGAAGACAAATTTTCCAGGTTTACCAACGTTGGA
AGATGTGGTTAGTGTGTTTCCATTGAGGTTAAAACTTTTATATGGTGTGC
AAGAGACCTCTCCATCTGGTTCAGCGTAACCGATATTACCATAGCCTGGA
TTATCGATTCGATCATAATTGAAAATAGTGTATGTGTTTTTGTAATCTGT
AGCTATGACAACTTGAAAACGGAATAAGATGTTTCGCTTATCGTAGTAAG
GAACATTATTGAAAGTGATGACAATTGCTTCTTTTGATTTAAAAGATGGA
GCAGATTTTGAAAGTGATATATCTGTGTCAATCATGTTTAATATATTCTG
TTGTGTTGTAGAGCGGTAAAGAATATCTCTGCCGTAACTTTTCAAGTCAT
AATTGAATGGGACGAGTACAGAGTAATAAGAAGTCAATGATGCTCTCGTG
TCTGTGTTTGAATTATCTACTGTGATGAAACCATTGCTATTAATCTAAAA
ATGAAAATTTGTTCGTAAATTCTTAGTATTCTGCTCCTGAAATGTATTAT
TTGATTTCGGATCAAAGAAACACTTACTGGATTTAGTCTTCAAAATGTAA
TTTCAAAGTTTATATCAAGTGTTAAGAACTCACTTGGAATGTAAGAAACT
TACGCAAACTTGGGATCGGTTGGCTGTTGAAAATAATGGGAATCTTTTGG
AGAACGAAGAGAAGCAGGTTGAAGAACTGTCACCTTCGTTAGCAAAACGA
TCACCATAGGATTGTCCATATGGGATGAACTCTGAAAAACAAGGTTTTTT
CGATAGTATTCATATTTTACTAATGTAAAAATTTATTTGGGAAATATTTT
GAATTTGATTACAGCCAACTTTTTCAGAATGGCTTAACTAAGTGTACCTG
TTCTTTATTGATCAATGTTAACAATGAAATATATCTTACATTGAAATGTC
GAAAAGACAGGAGAGAAAAATCGAGCATGCCAAAACAAATTGGTTTACCT
TTGTCGTTAGTACAATTGGTCAGCAAGAAGACAAATTTTCCAGGTTTACC
AACGTTGGAAGATGTGCTTAGTGTGTTTCCATTGAGGTTAAAACTTTTAT
ATGGTGTGCAAGAGACCTCTCCATCTGGTTCAGCGTAACCGATATTGCCA
TAGCCTGGATTATCGATTCGATCATAATTGAAAATAGTGTATGTGTTTTT
GTAATCGGTAGCCATGACAACTTGAAAACGGAATAAGATGTTTCGCTTAT
CGTAATAAGGAACATTATTGAAAGTGATGACAATTGCTTCTTTTGATTTA
AAAGATGGAACAGATTTTGAAAGTAATATATCTTTGTCAATCATGCTTAA
TATATTCTGCTGTGTTGTCGAGCGGTAAAGAATATCTCTGCCGTAACTTT
TCAAGTCATAATTGAATGGGACGAGTAATAAGAAGTCAATGATGCTCTCG
TGTCTGTGTTTGAATTATCTACTGTGATGAAACCATTGCTATTAATCTAA
AAAATGAAAATTTGATTGGTGAATTCTTAGTATTCTGCTCCTGACAGGTA
TTATTTGATTTCGGGTCAAAGAAACACTTACAGGATTTAGTCTTCAAAAT
GTAATTTCAAAGTTTACATCAAGTGTTAAGAACTCACTTGGAATGTAAAA
TACTTACGCAAACTTGAGATCGGTTGGCTGTTGAAAATAATGGGAATCTT
TTGGAGAACGAAGAGTTAGTGTGTTTCCATTGAGGTTAAAACTTTTATAT
GGTGTGCACGAGACCTTTCCATCTGGTTCAGCGTAACCGATATTGTCATA
GCCTGGGTTATCCATACGTTCATAATTGAAAATAGTGTATGTTTTTTTGT
AATCGGTCGCTATGATAGCTTGAAAACGGAATAAGATGTTTCGATTATCG
TAATAAGGAACGTTATTGAAAGTGATGACAATTGCTTCTTTTGATTTAAA
AGATGGAGCAGATTTTGAAAGTGAAATATCTCTGTCGATCGAGTTCAATG
TAGTTTGATCTTTTGTGGTGCGGCACAGTATATCATTTCCATGACTTCTC
ATGTCGTAATTAAATGGGACGAGTACTGAGATGTAGGAGGTCAAAGATGC
TCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045300XLOC_045300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073072-exon-scaffold_86-1575043694:1245925..1246001TCONS_00073072-exon-scaffold_86-1575043694:1245925..1246001Clytia hemisphaericaexon
TCONS_00073072-exon-scaffold_86-1575043694:1243895..1244267TCONS_00073072-exon-scaffold_86-1575043694:1243895..1244267Clytia hemisphaericaexon
TCONS_00073072-exon-scaffold_86-1510915933:1245925..1246001TCONS_00073072-exon-scaffold_86-1510915933:1245925..1246001Clytia hemisphaericaexon
TCONS_00073072-exon-scaffold_86-1510915933:1243895..1244267TCONS_00073072-exon-scaffold_86-1510915933:1243895..1244267Clytia hemisphaericaexon
TCONS_00073072-exon-scaffold_86-1491911889:1245925..1246001TCONS_00073072-exon-scaffold_86-1491911889:1245925..1246001Clytia hemisphaericaexon
TCONS_00073072-exon-scaffold_86-1491911889:1243895..1244267TCONS_00073072-exon-scaffold_86-1491911889:1243895..1244267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1243895..1246001 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268322	0	0.166679	0	0	0	0	0.177185	0.124052	0	0.357742	0.0307262	5.90076	7.58505	7.45552	27.7558	2.03003	4.64334	12.4922	11.8791	11.8273	12.093	1.95256	3.94567	4.41962	8.69324	0.201855	0	0.163392	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003886NIDO_dom
Vocabulary: Biological Process
TermDefinition
GO:0007160cell-matrix adhesion
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007160 cell-matrix adhesion
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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