TCONS_00073074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073074
Unique NameTCONS_00073074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2966

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073074 ID=TCONS_00073074|Name=TCONS_00073074|organism=Clytia hemisphaerica|type=transcript|length=2966bp
aaaaaataaataaaaatggcgAGCAATGATGCAACTGCACAGCAGTCTAT
TACCACCCCACAGCCACAAATAACCACTCCACAGCCGCACATTGAAACAT
CACAACCGCAGATTACCACACAGACGCCCCCACCTCAAACGTTGAATCAA
ACTGCAGACAAAATACAAGATTTTTTACGTTTTGTTGAAACTGTGGAAAC
TACTGGTGATGTAGTGGAAGGAGAAATAAGTAACGATGTTAATCTACATG
AAATCTATGATCACGATGGTGCTGGTGGTGATTTAAATTCTGGTCAATCT
TCAAATAGTGGTGTTAACCCAAACGATGCTCTCCAAAGTGAATCCGCTAA
TGCTGGTCTAAATTCAAATGAAACTTTGGTCTTTGTAACTCCAACTAAAG
AAAAGGCTCCACCAAGACGCTCTTTCattaataatattcaaaaatCGTTA
GATTCTCATTACTTTGACAATCATCATTATGGTATGGTTAATCATGAACA
TTTTAATAATTATCAAGTCATTAACGGATATTTAGGTCCAAAACAACATT
CAGAGAAAGTATATTGGACAAATTTAATGCCCAACAACATCCATGTTCAA
AGACCATGTGACATTTTACCGCCTGTACCCCAAGCCATGACTCTTCTTCC
TTTAGCTTCAAGTATTGAAACCATAAGAGACGCGTTTGATATTTTATTCC
CTGTCGAAATGGTGGATTTGATTCTCAAACATACCAACCAGAAGATCAAG
CACGTCCAAGACAATCTACCAGATCCGaaagaaaattcatcaaatcgATC
GTATTATTATGTCAGACCTTTAAGTCGGAACGAGCTTTACGCTTTTCTTG
GGTTATTGTACGCTAGAGGCCTTCTTGGCAAATCTACCTACAAAATTGAG
AATCTCTTTCATGAGACTTCTGGTCATCCCGTCTTCAGTGGAACAATGTC
CAGACATCGATTAAGCTTTATTCTATCTGTCCTTTCGTTTGATGAAGAAA
ACGAACAGTTGAAAGAGCTTTGGAAATCTGATCGATTCGCAGCGGTTAGA
GAATTGACAAATACTTTTAACGAGCGAATGAAAAGTGTCTTGATTCCGTC
CCAATATCTGACCATTGATGATACTTTGTATCCAATGACCCAGCCTGTTG
GCAACAAGGCTTTCAACCCGAATGATAAAATCAGGAACGGTTTATTGTAT
AAATCCTTAAGCGATGCGACTGTACCCTTCATTTATCAAGTCGCTCCATA
CTCGGCAAAACCTTTAAACAGTACTGGGCCATATTATTTGGACACCACCG
AAGACTACGTGAAGAATCTTGTAGAATCTTTACCGGGAAGAAATATGAAA
GGTAGGACCATTACAATGGATCAACAATACAGTTCTGTCTTGACAGCCAG
TTGGCTTTTCTCCAGAGATATAACCATGGTTGGGATGGTGGATGCGAGTA
ATCCAGGAGTCCCTGAAGAATTGCGAATTCCAAAAAATCGTGAAGAGAAT
CAAAGCACAATGCATTGGGAAAAACATCAGGGAAATTTTGTGTTATGCAC
TTATACAAAGAAAGCTACGAATACCAAAGGGAAGGAAAATATCTTCATGT
TAACAACCACACGACCTTTGCTTGGTGTCACGAAAGAGGGTCAAAAACGT
GTTCCATCATTGATCAGATTCTacgaaaacacaaagaaatgcAATGAAGa
atttaatcaattttcaacaaaaactatAACACATCAATGGGCAAAAGCTC
ATTTCTACTTCTTATTGGATGTCATTCGTCGAAATTCTTTAACCTTGCAT
TCAATCAAACACGGTAAAAATTGTCTGGTGGGGATGGAAACATTTGACCC
CTCGTGGGAACTTGTTATGAGCTTGGTCAAGCCGTTTGTTGCCGAAAGAC
CACTCACGGGCTTGTGCTTTaacgtcaaaaataaaatatctatTCTACTC
GGGAAAATTCCTGACCAGTCTGGtcttgaaaatgaagaatattCGAGGGT
TGGTGAATCAAGAAAGCGTTGTCGAGTCTGTTTGGATGATATTGCTGGTA
AAGGTTGTAAGAAACGAAAAGATAGCTTGAACAAAACCAAGAACAGGTGT
CAGAAATGTGGTGAATGTATCTGTGAGAAGCATTCGAGATTGGTTTGCAA
AAAGCATGAATTTCTTGAAtgatcactttctattgcaatgtTTAAATTGT
GGGCCTGATAATGGATAATACACCAATCGACCTTTTGCTGAGCGGTGTGT
GACAATTTAGAATGAATttgttctcagaagactctccagtggtgtaTATT
ATGAATAGGGCTAATTTGTCAGATACGGAATCGACTAATAGGCTAAAAAG
AATAATCAAAAACTCTAGATTTTAATTCAAGAAAGATATGAAAATCTgaa
tacatatttgaaatcagacCAAGTTTTTGGTTTGGAAGAAAAAACCTTCT
ATTTTTCTCATTCACTTTCgaaatatttaaagatttttaaacccATGAAA
TTATTCACTGAAAATTATCCTTCCAACATCTTATTTGCTTCAAGAGCAAT
GTCCCGAAATGGNTGAATCAAGAAAACGTTGTCGAGTCTGTTTGGATGAT
ATTGCTGGTAAAGGTTGTAAGAAACGAAAAGATAGCTTGAACAAAACCAA
GAACAGGTGTCAGAAATGTGGTGAATGTATCTGTGAGAAGCATTCGAGAT
TGGTTTGCAAAAAGCATGAATTTCTTGAAtgatcactttctattgcaatg
tTTAAATTATGGGCCTGATAATGGATAATACACCAATCGACCTTTTGCTG
CGCGGTGTGTGAGAATTTAGAATGAATtggttctcagaagactctccagt
ggtgtaTATTATGAATAGGGCTAATAGTAATTTGTCAGATACGGAATCGA
CTAATAGGCTAAAAAGAATAATCAAAAACTCTAGATTTTAATTCAAGAAA
GATATGAAAATCTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_86:1280699..1284193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073074 ID=TCONS_00073074|Name=TCONS_00073074|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at scaffold_86:1280699..1284193- (Clytia hemisphaerica)
AAAAAATAAATAAAAATGGCGAGCAATGATGCAACTGCACAGCAGTCTAT
TACCACCCCACAGCCACAAATAACCACTCCACAGCCGCACATTGAAACAT
CACAACCGCAGATTACCACACAGACGCCCCCACCTCAAACGTTGAATCAA
ACTGCAGACAAAATACAAGATTTTTTACGTTTTGTTGAAACTGTGGAAAC
TACTGGTGATGTAGTGGAAGGAGAAATAAGTAACGATGTTAATCTACATG
AAATCTATGATCACGATGGTGCTGGTGGTGATTTAAATTCTGGTCAATCT
TCAAATAGTGGTGGCGAGAGAATTACGCCAATTCTAAGCGGTTAGAAAAG
TACTTGATTTTCTTTTTGTGTTTGTAGACCAAAGCACAATAAAAATTTCA
GTGACTTTTGCATCTTGGGCTTGGATATTTTTCTCACCGGGAACGATTTT
ATGCCAATTTTTCAGTAAGGGACAAGGAATGTGATACTGAATTAGATTGG
ACACGCTATCGAAATCTTCTTGAAATTAAACTGGGAAACTTTTAAACAGC
TGCTTTGTATACACCCCTGTGTCACAGACCCGCTGGGACCCCAGCCTCAC
TGGAAAATTTGGCAAAAATTTCGTCTCCAGTGGGAAAATTTCAGCCCCAA
TTTCAGCCATCTCCATTCGTGATCCAATTTTTAAAAGAAGAAAAAAAGTT
TCACCGGGGCTGTGAGACAGCCAGGGGTGTTTATATGGGTATTATAGATA
TCCTTGGATATGCTTTATGCTAACAGATAGTATAGTCCTCTAGAGTAAGA
TTTTATTATTTTCTCATTGTGTTTTGTGTCTCTATCTTTTAGTTAACCCA
AACGATGCTCTCCAAAGTGAATCCGCTAATGCTGGTCTAAATTCAAATGA
AACTTTGGTCTTTGTAACTCCAACTAAAGAAAAGGCTCCACCAAGACGCT
CTTTCATTAATAATATTCAAAAATCGTTAGATTCTCATTACTTTGACAAT
CATCATTATGGTATGGTTAATCATGAACATTTTAATAATTATCAAGTCAT
TAACGGATATTTAGGTCCAAAACAACATTCAGAGAAAGTATATTGGACAA
ATTTAATGCCCAACAACATCCATGTTCAAAGACCATGTGACATTTTACCG
CCTGTACCCCAAGCCATGACTCTTCTTCCTTTAGCTTCAAGTATTGAAAC
CATAAGAGACGCGTTTGATATTTTATTCCCTGTCGAAATGGTGGATTTGA
TTCTCAAACATACCAACCAGAAGATCAAGCACGTCCAAGACAATCTACCA
GATCCGAAAGAAAATTCATCAAATCGATCGTATTATTATGTCAGACCTTT
AAGTCGGAACGAGCTTTACGCTTTTCTTGGGTTATTGTACGCTAGAGGCC
TTCTTGGCAAATCTACCTACAAAATTGAGAATCTCTTTCATGAGACTTCT
GGTCATCCCGTCTTCAGTGGAACAATGTCCAGACATCGATTAAGCTTTAT
TCTATCTGTCCTTTCGTTTGATGAAGAAAACGAACAGTTGAAAGAGCTTT
GGAAATCTGATCGATTCGCAGCGGTTAGAGAATTGACAAATACTTTTAAC
GAGCGAATGAAAAGTGTCTTGATTCCGTCCCAATATCTGACCATTGATGA
TACTTTGTATCCAATGACCCAGCCTGTTGGCAACAAGGCTTTCAACCCGA
ATGATAAAATCAGGAACGGTTTATTGTATAAATCCTTAAGCGATGCGACT
GTACCCTTCATTTATCAAGTCGCTCCATACTCGGCAAAACCTTTAAACAG
TACTGGGCCATATTATTTGGACACCACCGAAGACTACGTGAAGAATCTTG
TAGAATCTTTACCGGGAAGAAATATGAAAGGTAGGACCATTACAATGGAT
CAACAATACAGTTCTGTCTTGACAGCCAGTTGGCTTTTCTCCAGAGATAT
AACCATGGTTGGGATGGTGGATGCGAGTAATCCAGGAGTCCCTGAAGAAT
TGCGAATTCCAAAAAATCGTGAAGAGAATCAAAGCACAATGCATTGGGAA
AAACATCAGGGAAATTTTGTGTTATGCACTTATACAAAGAAAGCTACGAA
TACCAAAGGGAAGGAAAATATCTTCATGTTAACAACCACACGACCTTTGC
TTGGTGTCACGAAAGAGGGTCAAAAACGTGTTCCATCATTGATCAGATTC
TACGAAAACACAAAGAAATGCAATGAAGAATTTAATCAATTTTCAACAAA
AACTATAACACATCAATGGGCAAAAGCTCATTTCTACTTCTTATTGGATG
TCATTCGTCGAAATTCTTTAACCTTGCATTCAATCAAACACGGTAAAAAT
TGTCTGGTGGGGATGGAAACATTTGACCCCTCGTGGGAACTTGTTATGAG
CTTGGTCAAGCCGTTTGTTGCCGAAAGACCACTCACGGGCTTGTGCTTTA
ACGTCAAAAATAAAATATCTATTCTACTCGGGAAAATTCCTGACCAGTCT
GGTCTTGAAAATGAAGAATATTCGAGGGTTGGTGAATCAAGAAAGCGTTG
TCGAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAGAAACGAAAAG
ATAGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGGTGAATGTATC
TGTGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAATTTCTTGAATG
ATCACTTTCTATTGCAATGTTTAAATTGTGGGCCTGATAATGGATAATAC
ACCAATCGACCTTTTGCTGAGCGGTGTGTGACAATTTAGAATGAATTTGT
TCTCAGAAGACTCTCCAGTGGTGTATATTATGAATAGGGCTAATTTGTCA
GATACGGAATCGACTAATAGGCTAAAAAGAATAATCAAAAACTCTAGATT
TTAATTCAAGAAAGATATGAAAATCTGAATACATATTTGAAATCAGACCA
AGTTTTTGGTTTGGAAGAAAAAACCTTCTATTTTTCTCATTCACTTTCGA
AATATTTAAAGATTTTTAAACCCATGAAATTATTCACTGAAAATTATCCT
TCCAACATCTTATTTGCTTCAAGAGCAATGTCCCGAAATGGNTGAATCAA
GAAAACGTTGTCGAGTCTGTTTGGATGATATTGCTGGTAAAGGTTGTAAG
AAACGAAAAGATAGCTTGAACAAAACCAAGAACAGGTGTCAGAAATGTGG
TGAATGTATCTGTGAGAAGCATTCGAGATTGGTTTGCAAAAAGCATGAAT
TTCTTGAATGATCACTTTCTATTGCAATGTTTAAATTATGGGCCTGATAA
TGGATAATACACCAATCGACCTTTTGCTGCGCGGTGTGTGAGAATTTAGA
ATGAATTGGTTCTCAGAAGACTCTCCAGTGGTGTATATTATGAATAGGGC
TAATAGTAATTTGTCAGATACGGAATCGACTAATAGGCTAAAAAGAATAA
TCAAAAACTCTAGATTTTAATTCAAGAAAGATATGAAAATCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045301XLOC_045301Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073074-exon-scaffold_86-1575043694:1283881..1284193TCONS_00073074-exon-scaffold_86-1575043694:1283881..1284193Clytia hemisphaericaexon
TCONS_00073074-exon-scaffold_86-1575043694:1280699..1283351TCONS_00073074-exon-scaffold_86-1575043694:1280699..1283351Clytia hemisphaericaexon
TCONS_00073074-exon-scaffold_86-1510915933:1283881..1284193TCONS_00073074-exon-scaffold_86-1510915933:1283881..1284193Clytia hemisphaericaexon
TCONS_00073074-exon-scaffold_86-1510915933:1280699..1283351TCONS_00073074-exon-scaffold_86-1510915933:1280699..1283351Clytia hemisphaericaexon
TCONS_00073074-exon-scaffold_86-1491911889:1283881..1284193TCONS_00073074-exon-scaffold_86-1491911889:1283881..1284193Clytia hemisphaericaexon
TCONS_00073074-exon-scaffold_86-1491911889:1280699..1283351TCONS_00073074-exon-scaffold_86-1491911889:1280699..1283351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1280699..1284193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.58154	4.1388	0	1.27178	8.01786	6.83298	3.38945	2.47897	2.85437	1.60235	0.798536	0.269838	1.15473	1.58482	1.11618	2.79986	2.85371	1.28228	9.41623e-08	1.40319	0.341335	1.11756	4.08661	2.03545	1.00919	1.78784	1.09698	1.7367e-06	1.71525	2.11279
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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