TCONS_00073145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073145
Unique NameTCONS_00073145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073145 ID=TCONS_00073145|Name=TCONS_00073145|organism=Clytia hemisphaerica|type=transcript|length=635bp
TGGTATTTATCATGCAGCTTCATCATGCACTCTAGTTCGTCACCCAAAGA
TGAATGTTATTGTTGATCCTGGTGGCCCTTGGGAAAGACAAGTCATTTTA
GATGCTTTCAAAAGAACTGGTTTAGACTGTTCTGATATCGATGTTGTTGT
TGGAACACATGGACATTCTGATCATGTTGGTAATTTAAATCTATTCCCTA
CAGCCAAACATATTGTTGGCCATGACATTAGCATTGGTGATCAATTTCAT
TCACATGGTTTCAAATCTGGTTTAACATATACCTTAGTTGAAGGTTGTTT
GGAGGTTATACCAACTCCTGGTCAAATGTTTTCTGGAGTTTCATTAATTG
TTCTTGATAGTATAGATTCTGGAATTGTTGGAATATGTGGTGATTTATTT
GAGACTGACAATGATGAAAGCTTTTGGCCAATGTTCAGTGAAAATGCAGC
ATTGCAATTACAAANCGATTTATTTGAAACTAACAATGATGAAAGCTTTT
GGCCTATGTTCAGTGAAAATGCAGCATTGCAATTACAAAGCCGCAATAAA
TTGCTTAGTTTGTGTGACTATATTATTCCTGGGCATTCTGGTATGTTCTC
AACAAGAATTAAGAAGACTCAATGTGAGAATAATA
Run BLAST on NCBI

protein sequence of TCONS_00073145-protein

>TCONS_00073145-protein ID=TCONS_00073145-protein|Name=TCONS_00073145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
GIYHAASSCTLVRHPKMNVIVDPGGPWERQVILDAFKRTGLDCSDIDVVV
GTHGHSDHVGNLNLFPTAKHIVGHDISIGDQFHSHGFKSGLTYTLVEGCL
EVIPTPGQMFSGVSLIVLDSIDSGIVGICGDLFETDNDESFWPMFSENAA
LQLQXDLFETNNDESFWPMFSENAALQLQSRNKLLSLCDYIIPGHSGMFS
TRIKKTQCENN
Run BLAST on NCBI

transcript from alignment at scaffold_86:1331561..1332195

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073145 ID=TCONS_00073145|Name=TCONS_00073145|organism=Clytia hemisphaerica|type=transcript|length=635bp|location=Sequence derived from alignment at scaffold_86:1331561..1332195 (Clytia hemisphaerica)
TATTATTCTCACATTGAGTCTTCTTAATTCTTGTTGAGAACATACCAGAA
TGCCCAGGAATAATATAGTCACACAAACTAAGCAATTTATTGCGGCTTTG
TAATTGCAATGCTGCATTTTCACTGAACATAGGCCAAAAGCTTTCATCAT
TGTTAGTTTCAAATAAATCGNTTTGTAATTGCAATGCTGCATTTTCACTG
AACATTGGCCAAAAGCTTTCATCATTGTCAGTCTCAAATAAATCACCACA
TATTCCAACAATTCCAGAATCTATACTATCAAGAACAATTAATGAAACTC
CAGAAAACATTTGACCAGGAGTTGGTATAACCTCCAAACAACCTTCAACT
AAGGTATATGTTAAACCAGATTTGAAACCATGTGAATGAAATTGATCACC
AATGCTAATGTCATGGCCAACAATATGTTTGGCTGTAGGGAATAGATTTA
AATTACCAACATGATCAGAATGTCCATGTGTTCCAACAACAACATCGATA
TCAGAACAGTCTAAACCAGTTCTTTTGAAAGCATCTAAAATGACTTGTCT
TTCCCAAGGGCCACCAGGATCAACAATAACATTCATCTTTGGGTGACGAA
CTAGAGTGCATGATGAAGCTGCATGATAAATACCA

Coding sequence (CDS) from alignment at scaffold_86:1331561..1332195

>TCONS_00073145 ID=TCONS_00073145|Name=TCONS_00073145|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_86:1331561..1332195 (Clytia hemisphaerica)
ATTATTCTCACATTGAGTCTTCTTAATTCTTGTTGAGAACATACCAGAAT
GCCCAGGAATAATATAGTCACACAAACTAAGCAATTTATTGCGGCTTTGT
AATTGCAATGCTGCATTTTCACTGAACATAGGCCAAAAGCTTTCATCATT
GTTAGTTTCAAATAAATCGNTTTGTAATTGCAATGCTGCATTTTCACTGA
ACATTGGCCAAAAGCTTTCATCATTGTCAGTCTCAAATAAATCACCACAT
ATTCCAACAATTCCAGAATCTATACTATCAAGAACAATTAATGAAACTCC
AGAAAACATTTGACCAGGAGTTGGTATAACCTCCAAACAACCTTCAACTA
AGGTATATGTTAAACCAGATTTGAAACCATGTGAATGAAATTGATCACCA
ATGCTAATGTCATGGCCAACAATATGTTTGGCTGTAGGGAATAGATTTAA
ATTACCAACATGATCAGAATGTCCATGTGTTCCAACAACAACATCGATAT
CAGAACAGTCTAAACCAGTTCTTTTGAAAGCATCTAAAATGACTTGTCTT
TCCCAAGGGCCACCAGGATCAACAATAACATTCATCTTTGGGTGACGAAC
TAGAGTGCATGATGAAGCTGCATGATAAATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045362XLOC_045362Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073145-proteinTCONS_00073145-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073145-exon-scaffold_86-1491911889:1331561..1332195TCONS_00073145-exon-scaffold_86-1491911889:1331561..1332195Clytia hemisphaericaexon
TCONS_00073145-exon-scaffold_86-1510915933:1331561..1332195TCONS_00073145-exon-scaffold_86-1510915933:1331561..1332195Clytia hemisphaericaexon
TCONS_00073145-exon-scaffold_86-1575043694:1331561..1332195TCONS_00073145-exon-scaffold_86-1575043694:1331561..1332195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1331561..1332195 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.333124	0.162424	0.754361	0.553518	1.2354	1.15373	2.24849	1.60382	0.771973	0.347714	0.928124	0.554647	0.110775	0	0.567477	0.101498	0.375113	0.833037	0.442648	0.0926399	3.62344	3.29912	0.572931	0.868129	0.357661	1.03741	0.22839	0	0.184871	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
Blast
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BLAST of TCONS_00073145 vs. Swiss-Prot (Human)
Match: MBLC1 (Metallo-beta-lactamase domain-containing protein 1 OS=Homo sapiens GN=MBLAC1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.588e-27
Identity = 58/138 (42.03%), Postives = 76/138 (55.07%), Query Frame = 2 
Query:   47 KMNVIVDPGGPWERQVILDAFKRTGLDCSDIDVVVGTHGHSDHVGNLNLFPTAKHIVGHDISI-GDQFHSHGFKSGLTYTLVEGCLEVIPTPGQMFSGVSLIVLDSIDSGIVGICGDLFETDNDESFWPMFSENAALQ 457
            +  ++VD GGPW R+ +L A    G+   D+ +VVGTHGHSDH+GNL LFP A  +V HD  + G ++  HG   G    L  G LEV  TPG        +V+     G V + GD+FE D DE  W   SE+ A Q
Sbjct:   77 RGPILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTHGHSDHIGNLGLFPGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPG-LEVWATPGHGGQRDVSVVVAGTALGTVVVAGDVFERDGDEDSWQALSEDPAAQ 213
The following BLAST results are available for this feature:
BLAST of TCONS_00073145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBLC13.588e-2742.03Metallo-beta-lactamase domain-containing protein 1... [more]
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