TCONS_00073154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073154
Unique NameTCONS_00073154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073154 ID=TCONS_00073154|Name=TCONS_00073154|organism=Clytia hemisphaerica|type=transcript|length=257bp
CTTCGACATTCTTCACGATTTCTGGCCAGCTCACATTTAGCACGAAAGTT
CGCAACAATCTTCTTTGGAATGCATCAATGGAATTTTCGGCTTGACAGGT
TGTTGAACTCCACAGCTCGCAGTTATACAGGAATATCAGTTCGATGTAGG
TCGTGAATGCTGACATTTTTGTGTGTGTAGTCAACTTTTTATGACAGAAC
AACGTTCGTAATTTGTTGGCAGCTGAAATCGAtattccttttcttctttt
aatgTCT
Run BLAST on NCBI

transcript from alignment at scaffold_86:1420657..1420913

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073154 ID=TCONS_00073154|Name=TCONS_00073154|organism=Clytia hemisphaerica|type=transcript|length=257bp|location=Sequence derived from alignment at scaffold_86:1420657..1420913 (Clytia hemisphaerica)
AGAcattaaaagaagaaaaggaataTCGATTTCAGCTGCCAACAAATTAC
GAACGTTGTTCTGTCATAAAAAGTTGACTACACACACAAAAATGTCAGCA
TTCACGACCTACATCGAACTGATATTCCTGTATAACTGCGAGCTGTGGAG
TTCAACAACCTGTCAAGCCGAAAATTCCATTGATGCATTCCAAAGAAGAT
TGTTGCGAACTTTCGTGCTAAATGTGAGCTGGCCAGAAATCGTGAAGAAT
GTCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045371XLOC_045371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073154-exon-scaffold_86-1491911889:1420657..1420913TCONS_00073154-exon-scaffold_86-1491911889:1420657..1420913Clytia hemisphaericaexon
TCONS_00073154-exon-scaffold_86-1510915933:1420657..1420913TCONS_00073154-exon-scaffold_86-1510915933:1420657..1420913Clytia hemisphaericaexon
TCONS_00073154-exon-scaffold_86-1575043694:1420657..1420913TCONS_00073154-exon-scaffold_86-1575043694:1420657..1420913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1420657..1420913 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.98657	4.02111	3.89075	6.85168	0.926807	0	2.18712	0	4.05675	6.34174	2.08886	2.40881	3.55955	0.555097	2.73174	1.25639	1.03185	1.05761	2.19171	0	5.31585	7.77865	1.576	3.58202	0	3.2927	4.71184	4.02288	7.62804	5.44024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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