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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=transcript|length=797bp
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC
AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG
TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA
TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA
CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG
TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA
TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA
TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA
TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT
AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG
AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA
TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC
CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA
TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA
TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACT
CTACTTGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACTCC Run BLAST on NCBI protein sequence of TCONS_00073160-protein >TCONS_00073160-protein ID=TCONS_00073160-protein|Name=TCONS_00073160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
DTKRDKDLLKGVLAEVTSIRFASHIQGKQSRSAVRNCKMSLRANVNKFRK
LESAVLKETNPKVKNQHAYQQRRLTQLKFKEMKVIAEGRGAQLKSDKFPE
LAMVLEGVFGANGMESHPRLSDDVLYKAKSNSIIMAKAREVLLALAPNSF
NISLSCCYNYTQNYKAGTHQAKRHHDGKNINARISLHAPPRIGVEKPSPN
LHWTSSNINTIIASSPNETIFDSKDAKSIVCADISPVQRIGKTWKKREGT
LLDHEWDQSRRNAVT Run BLAST on NCBI transcript from alignment at scaffold_87:26507..28572+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=transcript|length=2066bp|location=Sequence derived from alignment at scaffold_87:26507..28572+ (Clytia hemisphaerica)
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC
AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG
TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA
TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA
CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG
TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA
TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA
TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA
TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT
AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG
AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA
TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC
CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA
TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA
TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaaggtaaa
attttttcattgtgcTCTCCTCTTTCAGTTAGTGCCAATAGGAAATtgag
ctttcagaaaaaaacaaatatcaatcATCTACAGGAtatatttgcaacaa
caaggatgagagttacatgaatcaagttcaagatcccaaaACAATTAATC
AAAACTTGAAAAGAGACAAAATTGCAGCAGCCGGAATCAACACACTagat
tttgtcattcaattcctgagacagTGCTTCCATTTTTAGgtcttgtttat
acgctaaagtaaaagtaattccgtacatgtaaatgggtcagtgtttgagg
tctggcaaaatttccaggaaatagcctatccggtgCGTTCTGTCTAGATC
CTTTTCTTAGGAAGTTGTGCTTCAAAttatagttttcaaggttggcttgg
ctcaaactttttcatctatggctcaaattttaggtaatttctcatagttt
ttgaaaatgttaaactCATTTAGAAAGCGTcggtatattttttcatgatt
ccCTTTAGAAGTTCTgtggcaaatttttttgcttgcgagtcaagcAAATG
ATATAGTGCTCTCTTAAAATCTTTAATACGCATTTTGGCTGGAGGCTAGT
GTGACTGATTGTCCTTATAGTTTTATAATGCATTCAAGGTTTCCatgatt
ttcataaaaaatatatttgtcaTTGGATTCAAAATGATCCTAATGATTTT
CTTTGTTGGGTTTCTTCAAAACATAAATTACATCATAGTTCAAACCCTGC
TTTCTTAAGAAGGGGGATGACaacttccaaaaaaaacaaagaagggGATT
TGGAAATCCTCCTCAAAAAGGGGGGATAACAAGAAAGGGGGATCCCTTTG
GAAGGTTGATCGTTATgaagtcttctttttcttaccATGATTGAGTTTTT
CTctatatttttgtaatttaaatgagaaaatttgCTCAATTTACAAAGTA
CTTTCCTGTTTGCAGGCAATTTGAGTCTGGTATTTGAGTGTTACACAGTG
ttattttccaaaatcaaaaagccCAAGAACCTTaaaggaaaaagattttt
aaaagttgaGGGGAAGTCTAGagggggatcatttaagaaggggatCAGAC
TCCCTCTTGCACAAtgcatcaaaaaactttttatcttTAGATCTAATcag
atttgaaaaagaaatgattCAAAATTTGCAGAAATGAAATTCTGCAACag
ttgaaaaaatattgaacccCCTAAATGGATACAAATAATTGTATTGTGCT
TTGATCATTTTTAGGAACTCTACTTGATCATGAATGGGATCAGAGCAGAA
GAAACGCTGTCACTCC Coding sequence (CDS) from alignment at scaffold_87:26507..28572+ >TCONS_00073160 ID=TCONS_00073160|Name=TCONS_00073160|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_87:26507..28572+ (Clytia hemisphaerica)
GACACAAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTAC
AAGTATCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAG
TtagaaattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAA
TTGGAATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCA
CGCATATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGG
TTATTGCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAA
TTGGCAATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCA
TCCAAGACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTA
TAATGGCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTT
AACATTTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGG
AACCCATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGA
TTTCTTTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAAC
CTTCATTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAA
TGAAACTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACA
TCTCACCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACT
CTACTTGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACTGACAC
AAAAAGAGACAAAGATTTACTAAAGGGGGTACTTGCTGAGGTTACAAGTA
TCCGTTTTGCGTCACATATACAGGGGAAACAGAGTAGATCAGCAGTtaga
aattgcaaaatgtcattgCGGGCCAATGTCAACAAATTCAGAAAATTGGA
ATCAGCTGTATTGAAGGAAACGAACCCTAAAGTAAAAAACCAGCACGCAT
ATCAGCAAAGAAGGCTGACACAATTAAAGTTCAAAGAAATGAAGGTTATT
GCTGAAGGACGAGGAGCCCAATTGAAGTCTGACAAATTCCCAGAATTGGC
AATGGTCCTAGAAGGCGTATTTGGTGCCAATGGTATGGAGAGCCATCCAA
GACTATCTGATGATGTGCTTTACAAAGCCAAGAGTAATTCCATTATAATG
GCCAAGGCTCGAGAAGTCCTGCTTGCACTGGCACCTAACAGCTTTAACAT
TTCCCTATCATGTTGCTACAACTACACCCAAAATTACAAAGCAGGAACCC
ATCAAGCAAAACGACATCACGATGGAAAAAACATCAATGCCCGGATTTCT
TTGCACGCACCCCCAAGGATAGGTGTTGAAAAACCATCCCCAAACCTTCA
TTGGACATCATCCAATATAAATACTATAATTGCATCATCACCAAATGAAA
CTATCTTTGATTCAAAAGACGCTAAAAGTATTGTTTGTGCTGACATCTCA
CCAGTCCAAAGGATTggcaaaacttggaaaaaaagagaagGAACTCTACT
TGATCATGAATGGGATCAGAGCAGAAGAAACGCTGTCACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073160-exon-scaffold_87-1491911889:26507..27251 | TCONS_00073160-exon-scaffold_87-1491911889:26507..27251 | Clytia hemisphaerica | exon |
| TCONS_00073160-exon-scaffold_87-1510915933:26507..27251 | TCONS_00073160-exon-scaffold_87-1510915933:26507..27251 | Clytia hemisphaerica | exon |
| TCONS_00073160-exon-scaffold_87-1575043694:26507..27251 | TCONS_00073160-exon-scaffold_87-1575043694:26507..27251 | Clytia hemisphaerica | exon |
| TCONS_00073160-exon-scaffold_87-1491911889:28521..28572 | TCONS_00073160-exon-scaffold_87-1491911889:28521..28572 | Clytia hemisphaerica | exon |
| TCONS_00073160-exon-scaffold_87-1510915933:28521..28572 | TCONS_00073160-exon-scaffold_87-1510915933:28521..28572 | Clytia hemisphaerica | exon |
| TCONS_00073160-exon-scaffold_87-1575043694:28521..28572 | TCONS_00073160-exon-scaffold_87-1575043694:28521..28572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:26507..28572 + |
Blast
The following BLAST results are available for this feature:
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