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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073205 ID=TCONS_00073205|Name=TCONS_00073205|organism=Clytia hemisphaerica|type=transcript|length=1327bpRun BLAST on NCBI protein sequence of TCONS_00073205-protein >TCONS_00073205-protein ID=TCONS_00073205-protein|Name=TCONS_00073205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MATTLTTIVKRSAKFHPRFTTCRHGSSGSRDFVKIVEVGARDGLQNEKELRun BLAST on NCBI transcript from alignment at scaffold_88:183471..204483+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073205 ID=TCONS_00073205|Name=TCONS_00073205|organism=Clytia hemisphaerica|type=transcript|length=21013bp|location=Sequence derived from alignment at scaffold_88:183471..204483+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_88:183471..204483+ >TCONS_00073205 ID=TCONS_00073205|Name=TCONS_00073205|organism=Clytia hemisphaerica|type=CDS|length=9390bp|location=Sequence derived from alignment at scaffold_88:183471..204483+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073205 vs. Swiss-Prot (Human)
Match: HMGC2 (3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3) HSP 1 Score: 349.747 bits (896), Expect = 1.399e-116 Identity = 163/286 (56.99%), Postives = 217/286 (75.87%), Query Frame = 3
Query: 150 SGSRDFVKIVEVGARDGLQNEKELVPTNTKIELIDRLSATGLQTIEATSFVSPKWVPQLADNKELFTKIEKKDGVSYPVLVPNLKGYQQAVAAGVREIAVFGSASEGFSQKNINCSIEESLKRFQNVFDASKNDGIRIRGYLSCTVGCPYDGQVAPKQVAKVTESLLEMGCYEVSLADTIGVGSPESIERMLGEVLAVSRPEVLAIHCHDTNGKAVQNIAKSLDLGVRVVDSSVGGLGGCPYAKNATGNVSTEKVLQFLSTQGVETGVNLEEIKEIGEWIRKSLGK 1007
SG +FVKIVEVG RDGLQNEK +VPT+ KIE I+RLS TGL IE TSFVS +WVPQ+AD+ E+ I + GV YPVL PNL+G+ AVAAG EI+VFG+ASE FS+KNINCSIEES+ +F+ V ++++ I RGY+SC +GCPY+G + P++V +V++ L MGCYE+SL DTIGVG+P S++RML V+ P LA+HCHDT G+A+ NI +L +G+ VVDS+V GLGGCPYAK A+GNV+TE ++ L+ G+ TGVNL ++ E G++I K++ K
Sbjct: 72 SGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNK 357 The following BLAST results are available for this feature:
BLAST of TCONS_00073205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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