|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TTAAAGACCTAGATAATAGTAAAAACTCAATCATAACAAACAAACATGGT
CAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCATTGCATATGGG
CTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATACCAGCTAACAAT
GATCACTTGCCACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATC
ACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTT
TTAAATGTGACGCATGTACAGCTATTGCTTTTcagATGGACAAACAGCTA
ACTCAtgcagaaaaaagtgacaagCCGATGAAAGAATCTGAATATCTGGA
TGTCTTTGACAAAGTCTGTGGACATGAAACCTATAAGAGTTACGGATTGA
AATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGGAAGCGAAT
GAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACAAGACTATC
ATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGATTTATG
ACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAAGAACTC
ACTACTGACtgcaagaaaatgaagaagaagaataagaaaaagaagaaggg
aAAGAAGAGTGAATTGTAAGATTTTTAGaagttttgtttttccttttgtt
tttattattctaATATTATTATTCGGTTTTTCTTATAtttgttattactt
ttttttctattagtCTATTAATTTATTAGTTAGttttgacgctctctaat
tcgccGTCGTGACAACAGGATTCTTCCAAACCTTTTTCTACTTTTTGATA
AGCTGATTCGATGAAAATATTCCCAttgaaattcgaattacagagcgtca
actgtatttttagtgtttttttatgttcTTAGGGGTAGGGAAACAATGTT
TTCTCGCAAAGTACACTGTCTACTAGTTTGCTCTAATGAAGTCCCTCGTG
CTGAGAATTAGGCTACGTCATACCTTTCTTCGTTTCGAATGTAAATCTCA
TACTTTTCGTAATGTCTAAAAGCTTGATTGTATATCAGCTCCTAGTTGgt
tcagggggggggtcaacatttataataccaacccatagcccaaaaaactg
acttttgaccttttcagctaagttaacaccaccaccccaaaattggtatc
gataccaacttgaaaatcataattttcagaaaaaggggggacccaccccc
ttattt Run BLAST on NCBI protein sequence of TCONS_00073210-protein >TCONS_00073210-protein ID=TCONS_00073210-protein|Name=TCONS_00073210-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MVKIVVILFALLYSHCIWAADGDDQETVDRIPANNDHLPPNVDPSSRISF
ESPKMSDEEQFSAHLPDSFKCDACTAIAFQMDKQLTHAEKSDKPMKESEY
LDVFDKVCGHETYKSYGLKSLNGVNRISGEGLEANEHPGMMYGGGKWPTR
LSSKCFELIGEHGEDEIYDAFRSTDDFHTFLCKELTTDCKKMKKKNKKKK
KGKKSEL Run BLAST on NCBI transcript from alignment at scaffold_88:16036..19460- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at scaffold_88:16036..19460- (Clytia hemisphaerica)
TTAAAGACCTAGATAATAGTAAAAACTCAATCATAACAAACAAACATGGT
CAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCATTGCATATGGG
CTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATACCAGCTAACAAT
GATCACTTGCCACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATC
ACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTT
TTAAATGTGACGCATGTACAGCTATTGCTTTTCAGGTGATTTTTTTTTTA
AATCTTGTGATACAATTTTGTATTGGATTGGTTTCATTTTTTATGATTTT
GCTTCAGAACTTTTCCATCCGCTTTCCGCTTCTAAAAAACTGATGAATGC
ATGCACGCATATATTTTAATCATTACATACTCTCGGGTACTTAATAGCCC
CGTCTCCCCGCTAATTAATTTTTCCACCCAGGACATTCTTATTCCAACCC
CCCTGCTTATTAATTTTTGGGAAAATATTTTTGAAAGTTCCCTCTTTTGT
CCTAATTCAGCTGTAACAGCCTCCTTTTCAAAAATTTTCCACCAAGGACA
TTTCTATTTGAACCCCCCTCACTTATTAAGTTTTGAGATTTTTTCCAACC
CCGTCGCTTATTCGAATCCCCCCGGCTATTAGGTACCCAAGAGTAAATGG
AAGTGAGTCTTGTGATTCTAAAAAGAAATTTAGATTTGAGCGTATTCTTA
AAAGAGGAGCGTTTTTTTTAAATTGATGGCCAAAGCAGTCTAAAATTTAA
AACATTTCTGAGGCTCAACATGATTCTAAAAATATCCTAAAATTTTACAA
ATTTGAACAGATTTTGACTTCTGACTTTCAGAATTAGAAGAACTATAATT
TTTTTACATTTTAGCATGGAATTCTGCTTTAAAAAAAGGGTAGTAATATT
TAAATATATTTGTTCTTTAATAAATCACCTTAATGAAGAGAGGGGTTGTA
TTGTATTTTCAGCATGTTAAACCACAGATATATAAAACACTAGATAGAGC
TACTCTGTATTTTCCAAGCAATGGCAGGTGAAGCAAAATAATCCGCCATC
TTTGCTGAAAGTAGACCACAGTAGAAACCTTGGTTTTTGACACTCAAATG
ACTTCAAAATTTGAAGCACCACATAGGCTAAATTGTGACGTCACTTCGTT
CAAGATGGCGAATTACTTTGCTTCAATTAGTATCTAGTGATTTATTTAAG
ATATTTGTGATTTCAACTCAATCAAACATTAATTTTTAGATGGACAAACA
GCTAACTCATGCAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATC
TGGATGTCTTTGACAAAGTCTGTGGACATGAAACCTATAAGAGGTAAATC
TTTAATATTGTATGGTGGCTACTTCGAGATGATAAAAAATCTTTACAACT
AGAATATGCAATATTGCAAAATTATTTAGAATTTAGGAATGGAAACCTTT
TCTTTTACTAAAATTCTGGTGCTCGGAATTATCTTAACAAAGTATGATTG
ATTGATACTTTTAAATCATTCGTTAGGGTGAAAAAGGCTTGTAAATCGTA
GCTTTAGATCCTAAATGGTAGTTAAAGGGATAATCAGATGGTTTGTGATA
TTTGGCTTGTGTAATCTTTCTACTGTCCTGAGCAAAACCTCAAAATGTTT
TTACCTAAATATTTTCCAAAGTCGAGATATTTTAGATTACAAGTTTTTGA
CTTTTTGTAAGAAAACAATAGAATTTCAACGTAAGAACTGTTTGAGAACC
CATTTTCGGAAATTTCAAATTGTGATATCTCGACTTTAGAATATAGTTAC
CCAAACATACTTGGCGATTTTACTCAAAACCACAGAGGGTTTCTTCGAGC
AAAAAAAATCTCAAACCATCTGATTATCCCTTTAACACTTATTGAATGTA
CTTATAAAGGTTTTTTTATTTATATTTTTCTCCTAGAAAATATATTTTCT
CCTAGATCTCATTCCACTGATGATTGGTGCCTGAGCTCCATGAAACTCTG
AGTTTGAAACATAGATATTGTGTCAACTCTTCATTATAAATTATTCATTT
ATTGAATGGACTTACAACGGATTTTTTTATTCATTTTTTTCTGCTAGTTA
CGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGG
AAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACA
AGGTAAATCTATGTTTGACAGGCAATTTTCAATAAGAACAACAGGCTGAA
ATTCGGCAAAACTTATCAAACATCTAAGAACAATTTGACTCCCGAAGTTC
AAATTATTACTAAATAATTAAATACTGATTTTAAATATTTTAACCTGAGA
ATTTCAAAAAAAAAGAAGAAAAATCGAGGCAAAACTAAAATCTTACCTTT
CTTAATTGTTGTCATATACTTCACAATTCTTAAGCTTTGATAAAGAACGA
GACAGACATAAAAGTTCTGATTTGAAGGAAGAAAGTTTGTTGAAAATGGT
AATGAATTTTTGGGTCGGTAGGTTTTTAGGTAGGTAGTCTAGCCTAAGAA
TAAAAAAGGTTAAAAAACAAAAATGCACTCGAAATTTTATGTTTTTGTTT
CATTTCTTTGCAGACTATCATCGAAATGTTTCGAGTTGATCGGTGAACAC
GGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGATGATTTCCATAC
GTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAATGAAGAAGAAGA
ATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAAGATTTTTAGAAG
TTTTGTTTTTCCTTTTGTTTTTATTATTCTAATATTATTATTCGGTTTTT
CTTATATTTGTTATTACTTTTTTTTCTATTAGTCTATTAATTTATTAGTT
AGTTTTGACGCTCTCTAATTCGCCGTCGTGACAACAGGATTCTTCCAAAC
CTTTTTCTACTTTTTGATAAGCTGATTCGATGAAAATATTCCCATTGAAA
TTCGAATTACAGAGCGTCAACTGTATTTTTAGTGTTTTTTTATGTTCTTA
GGGGTAGGGAAACAATGTTTTCTCGCAAAGTACACTGTCTACTAGTTTGC
TCTAATGAAGTCCCTCGTGCTGAGAATTAGGCTACGTCATACCTTTCTTC
GTTTCGAATGTAAATCTCATACTTTTCGTAATGTCTAAAAGCTTGATTGT
ATATCAGCTCCTAGTTGGTTCAGGGGGGGGGTCAACATTTATAATACCAA
CCCATAGCCCAAAAAACTGACTTTTGACCTTTTCAGCTAAGTTAACACCA
CCACCCCAAAATTGGTATCGATACCAACTTGAAAATCATAATTTTCAGAA
AAAGGGGGGACCCACCCCCTTATTT Coding sequence (CDS) from alignment at scaffold_88:16036..19460- >TCONS_00073210 ID=TCONS_00073210|Name=TCONS_00073210|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_88:16036..19460- (Clytia hemisphaerica)
ACTATCATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGA
TTTATGACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAA
GAACTCACTACTGACTGCAAGAAAATGAAGAAGAAGAATAAGAAAAAGAA
GAAGGGAAAGAAGAGTGAATTGTAATTACGGATTGAAATCATTGAACGGT
GTCAATCGAATCTCAGGAGAAGGTCTGGAAGCGAATGAACATCCAGGAAT
GATGTATGGTGGTGGCAAATGGCCTACAAGATGGACAAACAGCTAACTCA
TGCAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATCTGGATGTCT
TTGACAAAGTCTGTGGACATGAAACCTATAAGAGATGGTCAAGATTGTTG
TTATACTGTTTGCATTATTGTATTCTCATTGCATATGGGCTGCTGATGGA
GATGATCAGGAAACTGTGGATCGGATACCAGCTAACAATGATCACTTGCC
ACCCAATGTAGATCCATCATCAAGGATTTCATTTGAATCACCAAAGATGT
CAGATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTTTTAAATGTGAC
GCATGTACAGCTATTGCTTTTCAGACTATCATCGAAATGTTTCGAGTTGA
TCGGTGAACACGGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGAT
GATTTCCATACGTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAAT
GAAGAAGAAGAATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAAT
TACGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCT
GGAAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTA
CAAGATGGACAAACAGCTAACTCATGCAGAAAAAAGTGACAAGCCGATGA
AAGAATCTGAATATCTGGATGTCTTTGACAAAGTCTGTGGACATGAAACC
TATAAGAGATGGTCAAGATTGTTGTTATACTGTTTGCATTATTGTATTCT
CATTGCATATGGGCTGCTGATGGAGATGATCAGGAAACTGTGGATCGGAT
ACCAGCTAACAATGATCACTTGCCACCCAATGTAGATCCATCATCAAGGA
TTTCATTTGAATCACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACAC
TTGCCAGACTCTTTTAAATGTGACGCATGTACAGCTATTGCTTTTCAGAC
TATCATCGAAATGTTTCGAGTTGATCGGTGAACACGGTGAAGACGAGATT
TATGACGCCTTTCGAAGTACTGATGATTTCCATACGTTTCTTTGCAAAGA
ACTCACTACTGACTGCAAGAAAATGAAGAAGAAGAATAAGAAAAAGAAGA
AGGGAAAGAAGAGTGAATTGTAATTACGGATTGAAATCATTGAACGGTGT
CAATCGAATCTCAGGAGAAGGTCTGGAAGCGAATGAACATCCAGGAATGA
TGTATGGTGGTGGCAAATGGCCTACAAGATGGACAAACAGCTAACTCATG
CAGAAAAAAGTGACAAGCCGATGAAAGAATCTGAATATCTGGATGTCTTT
GACAAAGTCTGTGGACATGAAACCTATAAGAGATGGTCAAGATTGTTGTT
ATACTGTTTGCATTATTGTATTCTCATTGCATATGGGCTGCTGATGGAGA
TGATCAGGAAACTGTGGATCGGATACCAGCTAACAATGATCACTTGCCAC
CCAATGTAGATCCATCATCAAGGATTTCATTTGAATCACCAAAGATGTCA
GATGAAGAGCAATTTTCAGCACACTTGCCAGACTCTTTTAAATGTGACGC
ATGTACAGCTATTGCTTTTCAGACTATCATCGAAATGTTTCGAGTTGATC
GGTGAACACGGTGAAGACGAGATTTATGACGCCTTTCGAAGTACTGATGA
TTTCCATACGTTTCTTTGCAAAGAACTCACTACTGACTGCAAGAAAATGA
AGAAGAAGAATAAGAAAAAGAAGAAGGGAAAGAAGAGTGAATTGTAATTA
CGGATTGAAATCATTGAACGGTGTCAATCGAATCTCAGGAGAAGGTCTGG
AAGCGAATGAACATCCAGGAATGATGTATGGTGGTGGCAAATGGCCTACA
AGATGGACAAACAGCTAACTCATGCAGAAAAAAGTGACAAGCCGATGAAA
GAATCTGAATATCTGGATGTCTTTGACAAAGTCTGTGGACATGAAACCTA
TAAGAGATGGTCAAGATTGTTGTTATACTGTTTGCATTATTGTATTCTCA
TTGCATATGGGCTGCTGATGGAGATGATCAGGAAACTGTGGATCGGATAC
CAGCTAACAATGATCACTTGCCACCCAATGTAGATCCATCATCAAGGATT
TCATTTGAATCACCAAAGATGTCAGATGAAGAGCAATTTTCAGCACACTT
GCCAGACTCTTTTAAATGTGACGCATGTACAGCTATTGCTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073210-exon-scaffold_88-1575043694:19176..19460 | TCONS_00073210-exon-scaffold_88-1575043694:19176..19460 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1575043694:18068..18171 | TCONS_00073210-exon-scaffold_88-1575043694:18068..18171 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1575043694:17209..17313 | TCONS_00073210-exon-scaffold_88-1575043694:17209..17313 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1575043694:16036..16797 | TCONS_00073210-exon-scaffold_88-1575043694:16036..16797 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1510915933:19176..19460 | TCONS_00073210-exon-scaffold_88-1510915933:19176..19460 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1510915933:18068..18171 | TCONS_00073210-exon-scaffold_88-1510915933:18068..18171 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1510915933:17209..17313 | TCONS_00073210-exon-scaffold_88-1510915933:17209..17313 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1510915933:16036..16797 | TCONS_00073210-exon-scaffold_88-1510915933:16036..16797 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1491911889:19176..19460 | TCONS_00073210-exon-scaffold_88-1491911889:19176..19460 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1491911889:18068..18171 | TCONS_00073210-exon-scaffold_88-1491911889:18068..18171 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1491911889:17209..17313 | TCONS_00073210-exon-scaffold_88-1491911889:17209..17313 | Clytia hemisphaerica | exon |
| TCONS_00073210-exon-scaffold_88-1491911889:16036..16797 | TCONS_00073210-exon-scaffold_88-1491911889:16036..16797 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:16036..19460 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021852 | DUF3456 |
Blast
BLAST of TCONS_00073210 vs. Swiss-Prot (Human)
Match: MZB1 (Marginal zone B- and B1-cell-specific protein OS=Homo sapiens GN=MZB1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.614e-27 Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 1
Query: 157 LPPNVDPSSRISFESPKMSDEEQFSAHLPDSFKCDACTAIAFQMDKQLTHAEK--------SDKPMKESEYLDVFDKVCGHETYKSYGLKSLNGVNRISGEGLEANEHPGM--MYGGGKWPTRLSSKCFELIGEHGEDEIYDAF-RSTDDFHTFLC 591
+P + + ++ +P++ DEE +SAH+P +CDAC A+A+QM + L AE + + E Y DV D+ C ++ YG++ ++ V R++G GL P + M GG WPTRLS C +GE GED+IY+A + LC
Sbjct: 17 IPGGLGDRAPLTATAPQLDDEEMYSAHMPAHLRCDACRAVAYQMWQNLAKAETKLHTSNSGGRRELSELVYTDVLDRSC-SRNWQDYGVREVDQVKRLTGPGLSEGPEPSISVMVTGGPWPTRLSRTCLHYLGEFGEDQIYEAHQQGRGALEALLC 171
The following BLAST results are available for this feature:
|
