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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073212 ID=TCONS_00073212|Name=TCONS_00073212|organism=Clytia hemisphaerica|type=transcript|length=1751bpRun BLAST on NCBI protein sequence of TCONS_00073212-protein >TCONS_00073212-protein ID=TCONS_00073212-protein|Name=TCONS_00073212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MYRPASATFPVPASPIFFATPQRSKSALSRRQRDGLSTPLLSNVEEQNRDRun BLAST on NCBI transcript from alignment at scaffold_88:27513..45536- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073212 ID=TCONS_00073212|Name=TCONS_00073212|organism=Clytia hemisphaerica|type=transcript|length=18024bp|location=Sequence derived from alignment at scaffold_88:27513..45536- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_88:27513..45536- >TCONS_00073212 ID=TCONS_00073212|Name=TCONS_00073212|organism=Clytia hemisphaerica|type=CDS|length=25440bp|location=Sequence derived from alignment at scaffold_88:27513..45536- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073212 vs. Swiss-Prot (Human)
Match: S18B1 (MFS-type transporter SLC18B1 OS=Homo sapiens GN=SLC18B1 PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 2.968e-53 Identity = 136/440 (30.91%), Postives = 232/440 (52.73%), Query Frame = 1
Query: 217 ESGESQKLIRNKKELLILIALCLSYFNAFCAFSMIAPIFPYEAKKFEMSTTLSGLVFSIYPLVVFLMSPIVGKYMPKVGVKFSLIAGGFLSGGSNILFGFLDYLYASDGEDENGNPKVKQSSYLQFVIFCFALRTFMAIGTAFNETAAVSIMTVTFKHALSTAQGSIALFTGLGLMAGPAIGSALYQLGNNNFLLPFVVIGSLVWLVILMIAFILPPENVFHDNSEGNTEQSNFWKVFLVPGIFMMSTVTLIAGMVISFLDPTLTPFV-QKLDPELKPFFVGLIFLCAPMTYAISTPFLGRLLDKKIIKGRNASIIGCFLGFICYLFMAPSPLFAFIKTSHLWLTVTSLLCLGFLCLTAMFVPVLADMQITARKAGLPMNLSTDAILSGIYTSMFYIGSIVGPALGAFLTQHLGFPKASTIFAFLLLLEGVCLLSFTLWE 1533
+GE+ + +++++ +LI+ + +S++ P FP EA+K S T+ G++F + L L S + G Y+ +G KF +AG F+SGG ILFG LD + DG F+ CF +R A+ A TA+ SI+ F + ++T GS+ F+GLGL+ GP +G LYQ + + +PF+V+G +V L++ + +ILP N E + + +FWK+ +P + +++ V FLDPTL+ FV +K + L +VGL+FL ++YAIS+P G L DK+ + + G + CY+ + P P+ IK+ L + ++ ++ +P ++ A + G LST ++SG++++M+ IG+ +GP LG FL + +GF A+ I L+ G+ + F L E
Sbjct: 21 SAGETPGWL-SREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNTIIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRV--PDGP--------------VFIAMCFLVRVMDAVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQ--SFGYEVPFIVLGCVVLLMVPLNMYILP-------NYESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFN--LPAGYVGLVFLGMALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPIL-HIKSQLWLLVLILVVSGLSAGMS--IIPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGLAMGLFYLLE 429 The following BLAST results are available for this feature:
BLAST of TCONS_00073212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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